Wall clock time and date at job start Tue Mar 31 2020 12:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.52999 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47288 * 54.98987 * 4 3 2 6 6 C 1.47193 * 109.47240 * 175.00104 * 4 3 2 7 7 C 4.90018 * 126.60417 * 356.82929 * 2 1 3 8 8 C 6.28237 * 122.75732 * 356.36180 * 2 1 3 9 9 C 1.39536 * 120.14600 * 340.24438 * 8 7 6 10 10 C 1.37971 * 119.85507 * 179.79507 * 9 8 7 11 11 C 1.38342 * 120.14519 * 0.46146 * 10 9 8 12 12 C 1.38345 * 120.28461 * 359.79003 * 11 10 9 13 13 C 1.37980 * 120.14423 * 359.97438 * 12 11 10 14 14 O 1.42900 * 109.46434 * 294.99790 * 4 3 2 15 15 C 1.35641 * 117.00403 * 100.14908 * 14 4 3 16 16 C 1.38449 * 120.26433 * 354.33643 * 15 14 4 17 17 C 1.38303 * 120.05159 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.59445 * 0.02562 * 17 16 15 19 19 C 1.36496 * 120.53454 * 359.97438 * 18 17 16 20 20 C 1.40716 * 119.92852 * 0.27753 * 19 18 17 21 21 C 1.41157 * 120.28472 * 179.72033 * 20 19 18 22 22 H 1.08005 * 119.99714 * 150.16044 * 21 20 19 23 23 C 1.39928 * 120.00445 * 330.16917 * 21 20 19 24 24 N 1.30865 * 119.99943 * 342.32963 * 23 21 20 25 25 Si 1.86794 * 120.00330 * 162.33634 * 23 21 20 26 26 H 1.48504 * 109.47355 * 59.99527 * 25 23 21 27 27 H 1.48497 * 109.47542 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47227 * 299.99727 * 25 23 21 29 29 H 1.09003 * 109.46651 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46840 * 299.99904 * 1 2 3 31 31 H 1.08995 * 109.46905 * 60.00614 * 1 2 3 32 32 H 1.09001 * 109.47331 * 239.99593 * 2 1 3 33 33 H 1.09005 * 109.47316 * 119.99743 * 2 1 3 34 34 H 1.09001 * 109.47335 * 59.99596 * 3 2 1 35 35 H 1.09005 * 109.46800 * 300.00059 * 3 2 1 36 36 H 1.07998 * 120.06535 * 0.02562 * 9 8 7 37 37 H 1.08000 * 119.92809 * 180.25310 * 10 9 8 38 38 H 1.07991 * 119.85939 * 179.76772 * 11 10 9 39 39 H 1.08006 * 119.92836 * 179.97438 * 12 11 10 40 40 H 1.07996 * 120.07047 * 179.97438 * 13 12 11 41 41 H 1.08007 * 119.97135 * 0.02562 * 16 15 14 42 42 H 1.08006 * 119.69925 * 180.02562 * 17 16 15 43 43 H 1.07997 * 119.73144 * 180.02562 * 18 17 16 44 44 H 1.07997 * 120.02906 * 180.02562 * 19 18 17 45 45 H 0.97000 * 120.00514 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0606 2.8250 -0.1216 7 6 4.4519 3.9277 -0.2176 8 6 4.9293 5.2726 -0.3353 9 6 6.2443 5.5825 0.0136 10 6 6.6992 6.8795 -0.1061 11 6 5.8520 7.8737 -0.5619 12 6 4.5455 7.5740 -0.9045 13 6 4.0796 6.2800 -0.7939 14 8 4.0467 0.8730 1.2202 15 6 4.4528 -0.4206 1.1791 16 6 4.2881 -1.1672 0.0249 17 6 4.7042 -2.4857 -0.0123 18 6 5.2884 -3.0738 1.1011 19 6 5.4624 -2.3601 2.2515 20 6 5.0424 -1.0186 2.3156 21 6 5.2133 -0.2752 3.5034 22 1 5.3602 0.7937 3.4549 23 6 5.1926 -0.9231 4.7435 24 7 4.6825 -2.1238 4.8459 25 14 5.8928 -0.0740 6.2527 26 1 5.1541 1.1911 6.4965 27 1 5.7508 -0.9646 7.4324 28 1 7.3296 0.2271 6.0294 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.9056 4.8080 0.3731 37 1 7.7180 7.1199 0.1597 38 1 6.2118 8.8880 -0.6503 39 1 3.8889 8.3547 -1.2592 40 1 3.0594 6.0475 -1.0613 41 1 3.8351 -0.7195 -0.8474 42 1 4.5734 -3.0628 -0.9159 43 1 5.6086 -4.1043 1.0565 44 1 5.9183 -2.8257 3.1127 45 1 4.6677 -2.5729 5.7056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230279045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:04 Heat of formation + Delta-G solvation = 34.320172 kcal Electronic energy + Delta-G solvation = -25231.098429 eV Core-core repulsion = 21757.945722 eV Total energy + Delta-G solvation = -3473.152707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95589 -40.07787 -38.38339 -35.80771 -35.47719 -34.87664 -32.21947 -31.92837 -31.53063 -30.45341 -29.50951 -27.06106 -25.54435 -23.87866 -23.46847 -23.21425 -22.40003 -21.62106 -19.50033 -19.23321 -18.49374 -17.55047 -16.97317 -16.53319 -16.45663 -16.06783 -15.98393 -15.91065 -15.20509 -14.88636 -14.68504 -14.41032 -14.38921 -14.27242 -14.07200 -13.64817 -13.46586 -13.22098 -12.95982 -12.78162 -12.75971 -12.70884 -12.41186 -12.29855 -12.17619 -12.08940 -11.89512 -11.76612 -11.64270 -11.52016 -11.10326 -11.05959 -11.01672 -9.95758 -9.48677 -9.36130 -8.86413 -8.56629 -6.23873 -0.13170 0.40749 0.94407 1.06283 1.32184 1.34138 1.44765 1.49047 1.74723 2.21572 2.67142 2.74493 2.97049 3.17110 3.66382 3.81418 3.88732 4.00647 4.02621 4.05276 4.20082 4.23747 4.36122 4.42705 4.49977 4.52699 4.58933 4.62559 4.66243 4.77237 4.86195 4.95099 5.02387 5.06907 5.08202 5.20414 5.23505 5.32724 5.40449 5.43494 5.44549 5.46594 5.49998 5.51810 5.85809 5.88863 5.98092 6.14815 6.31096 6.34639 6.49068 6.79438 6.91785 7.21275 8.38207 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.009271 B = 0.003696 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.585537 B = 7573.786240 C = 9276.745971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C -0.115 4.115 4 C 0.187 3.813 5 H 0.103 0.897 6 C -0.175 4.175 7 C -0.133 4.133 8 C -0.014 4.014 9 C -0.115 4.115 10 C -0.120 4.120 11 C -0.106 4.106 12 C -0.117 4.117 13 C -0.104 4.104 14 O -0.317 6.317 15 C 0.009 3.991 16 C -0.176 4.176 17 C -0.198 4.198 18 C -0.135 4.135 19 C -0.159 4.159 20 C 0.063 3.937 21 C -0.492 4.492 22 H 0.060 0.940 23 C 0.039 3.961 24 N -0.831 5.831 25 Si 0.972 3.028 26 H -0.268 1.268 27 H -0.262 1.262 28 H -0.261 1.261 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 14.513 -11.176 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.153 4.153 4 C 0.131 3.869 5 H 0.120 0.880 6 C -0.175 4.175 7 C -0.133 4.133 8 C -0.014 4.014 9 C -0.133 4.133 10 C -0.138 4.138 11 C -0.124 4.124 12 C -0.135 4.135 13 C -0.122 4.122 14 O -0.233 6.233 15 C -0.035 4.035 16 C -0.194 4.194 17 C -0.217 4.217 18 C -0.153 4.153 19 C -0.179 4.179 20 C 0.061 3.939 21 C -0.522 4.522 22 H 0.078 0.922 23 C -0.174 4.174 24 N -0.458 5.458 25 Si 0.793 3.207 26 H -0.192 1.192 27 H -0.186 1.186 28 H -0.186 1.186 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.169 0.831 38 H 0.177 0.823 39 H 0.177 0.823 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.388 14.445 -10.836 18.215 hybrid contribution 0.335 -0.313 0.952 1.056 sum -2.053 14.132 -9.884 17.367 Atomic orbital electron populations 1.21709 0.93941 1.02154 1.02228 1.21605 0.97392 0.95354 1.01879 1.21954 0.91177 0.98644 1.03514 1.19253 0.94826 0.84389 0.88429 0.87965 1.22371 0.99740 0.94155 1.01214 1.19819 0.99967 0.93263 1.00228 1.16182 0.94921 0.86778 1.03527 1.21402 0.94123 0.98367 0.99403 1.21414 1.01506 0.91615 0.99273 1.21731 0.93460 1.00630 0.96567 1.21486 0.96824 0.95821 0.99356 1.21446 0.99614 0.92762 0.98401 1.86073 1.79436 1.25121 1.32667 1.19348 1.03478 0.83825 0.96856 1.21013 1.05961 0.95832 0.96591 1.20616 1.07255 0.95032 0.98792 1.20680 1.01687 0.99207 0.93730 1.20711 1.04770 0.94832 0.97594 1.17381 0.91755 0.93082 0.91692 1.19382 1.46339 0.95044 0.91454 0.92226 1.26544 0.92574 0.95355 1.02947 1.69860 1.33362 1.14489 1.28067 0.85419 0.79689 0.78937 0.76653 1.19239 1.18566 1.18573 0.92274 0.93309 0.90767 0.90821 0.94300 0.92128 0.88003 0.86621 0.83147 0.82251 0.82297 0.84768 0.85014 0.85408 0.86732 0.88359 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.12 -3.89 4.53 30.59 0.14 -3.76 16 3 C -0.12 -3.62 4.88 30.59 0.15 -3.47 16 4 C 0.19 7.05 2.57 28.79 0.07 7.13 16 5 H 0.10 3.58 5.39 -2.39 -0.01 3.57 16 6 C -0.17 -6.58 12.94 31.12 0.40 -6.18 16 7 C -0.13 -4.66 13.24 30.01 0.40 -4.26 16 8 C -0.01 -0.41 5.72 -21.41 -0.12 -0.53 16 9 C -0.11 -2.99 9.75 22.52 0.22 -2.77 16 10 C -0.12 -2.24 10.03 22.23 0.22 -2.02 16 11 C -0.11 -1.57 10.04 22.32 0.22 -1.35 16 12 C -0.12 -1.86 10.03 22.23 0.22 -1.64 16 13 C -0.10 -2.31 9.75 22.52 0.22 -2.09 16 14 O -0.32 -15.54 8.88 -89.55 -0.79 -16.33 16 15 C 0.01 0.46 5.70 23.08 0.13 0.59 16 16 C -0.18 -7.55 7.44 22.34 0.17 -7.39 16 17 C -0.20 -8.30 10.04 22.42 0.23 -8.07 16 18 C -0.13 -6.21 9.97 22.00 0.22 -5.99 16 19 C -0.16 -8.57 8.61 22.47 0.19 -8.38 16 20 C 0.06 3.59 5.52 -21.20 -0.12 3.47 16 21 C -0.49 -28.78 8.65 23.40 0.20 -28.58 16 22 H 0.06 3.58 7.74 -2.91 -0.02 3.55 16 23 C 0.04 2.13 5.10 85.25 0.43 2.56 16 24 N -0.83 -45.57 11.32 21.83 0.25 -45.33 16 25 Si 0.97 41.42 29.59 68.60 2.03 43.45 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 27 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 28 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.09 6.80 -2.39 -0.02 2.07 16 33 H 0.04 1.55 6.59 -2.38 -0.02 1.54 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.16 1.23 8.06 -2.92 -0.02 1.21 16 39 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.13 4.73 4.34 -2.91 -0.01 4.72 16 42 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.10 5.50 6.56 -2.91 -0.02 5.48 16 45 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 Total: -1.00 -68.69 378.37 6.79 -61.90 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.99 Total: 31.89 kcal Atomic # 6 Polarization: -79.90 SS G_CDS: 4.32 Total: -75.58 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.25 Total: -45.33 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.79 Total: -16.33 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -68.69 6.79 -61.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230279045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.222 kcal (2) G-P(sol) polarization free energy of solvation -68.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds