Wall clock time and date at job start Tue Mar 31 2020 12:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47377 * 184.94459 * 3 2 1 5 5 H 1.08992 * 109.99779 * 306.58632 * 4 3 2 6 6 C 1.54323 * 109.87811 * 67.67704 * 4 3 2 7 7 C 1.55165 * 102.94150 * 141.60864 * 6 4 3 8 8 C 1.55130 * 101.48624 * 324.33204 * 7 6 4 9 9 N 1.47022 * 109.88346 * 185.48498 * 4 3 2 10 10 C 1.34771 * 125.64851 * 61.60681 * 9 4 3 11 11 O 1.21366 * 119.99966 * 355.39213 * 10 9 4 12 12 C 1.49314 * 120.00087 * 175.38740 * 10 9 4 13 13 O 1.21397 * 119.99697 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00006 * 179.72979 * 12 10 9 15 15 C 1.40287 * 120.00306 * 180.02562 * 14 12 10 16 16 C 1.40724 * 126.09690 * 359.68392 * 15 14 12 17 17 N 1.30881 * 108.37561 * 179.85860 * 16 15 14 18 18 N 1.40056 * 108.43374 * 0.40545 * 17 16 15 19 19 C 1.37297 * 126.05194 * 179.72263 * 18 17 16 20 20 H 1.07999 * 119.99750 * 180.02562 * 19 18 17 21 21 C 1.39009 * 120.00241 * 0.02562 * 19 18 17 22 22 N 1.31281 * 119.99762 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00052 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47229 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46968 * 119.99988 * 23 21 19 26 26 H 1.48501 * 109.47136 * 239.99819 * 23 21 19 27 27 C 1.35787 * 126.10465 * 180.02562 * 15 14 12 28 28 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47000 * 300.00179 * 1 2 3 30 30 H 1.08997 * 109.47058 * 59.99552 * 1 2 3 31 31 H 1.08996 * 109.47314 * 240.00227 * 2 1 3 32 32 H 1.09001 * 109.47032 * 119.99689 * 2 1 3 33 33 H 1.09008 * 109.47139 * 64.95016 * 3 2 1 34 34 H 1.09002 * 109.47221 * 304.95248 * 3 2 1 35 35 H 1.09002 * 110.72421 * 259.97404 * 6 4 3 36 36 H 1.09004 * 110.72106 * 23.24800 * 6 4 3 37 37 H 1.08999 * 111.00064 * 82.57239 * 7 6 4 38 38 H 1.08998 * 111.00401 * 206.38873 * 7 6 4 39 39 H 1.08998 * 110.50022 * 278.45328 * 8 7 6 40 40 H 1.09002 * 110.33886 * 156.05336 * 8 7 6 41 41 H 0.97006 * 120.00141 * 359.97438 * 14 12 10 42 42 H 1.07997 * 125.81298 * 359.97438 * 16 15 14 43 43 H 0.96998 * 119.99749 * 180.02562 * 22 21 19 44 44 H 1.07998 * 126.25130 * 359.96911 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5650 1.4443 -0.1243 5 1 4.0026 0.8109 0.6472 6 6 3.9782 0.9325 -1.5203 7 6 5.1847 1.8396 -1.8799 8 6 4.7554 3.1896 -1.2478 9 7 4.0757 2.8168 0.0062 10 6 3.9398 3.6056 1.0905 11 8 3.2824 3.2270 2.0378 12 6 4.5981 4.9453 1.1264 13 8 5.2561 5.3237 0.1790 14 7 4.4577 5.7364 2.2085 15 6 5.0758 6.9953 2.2420 16 6 5.8722 7.5553 1.2259 17 7 6.2679 8.7398 1.6174 18 7 5.7506 8.9791 2.8967 19 6 5.9469 10.1107 3.6490 20 1 5.4998 10.1921 4.6287 21 6 6.7212 11.1517 3.1497 22 7 7.2643 11.0529 1.9586 23 14 6.9889 12.6909 4.1736 24 1 6.2757 12.5541 5.4689 25 1 8.4412 12.8716 4.4254 26 1 6.4631 13.8706 3.4406 27 6 5.0177 7.8882 3.2633 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7509 1.9301 0.9311 34 1 1.6061 1.9813 -0.8423 35 1 4.2824 -0.1132 -1.4733 36 1 3.1674 1.0676 -2.2362 37 1 6.1029 1.4663 -1.4262 38 1 5.2951 1.9329 -2.9602 39 1 4.0690 3.7192 -1.9084 40 1 5.6304 3.8044 -1.0367 41 1 3.9287 5.4355 2.9639 42 1 6.1140 7.0880 0.2827 43 1 7.8049 11.7791 1.6103 44 1 4.4878 7.7587 4.1955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354846187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:50 Heat of formation + Delta-G solvation = -8.573113 kcal Electronic energy + Delta-G solvation = -26645.480347 eV Core-core repulsion = 22791.911136 eV Total energy + Delta-G solvation = -3853.569211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14528 -41.38669 -39.85963 -38.68847 -36.19457 -35.57344 -35.00551 -32.62989 -32.30279 -30.79716 -29.89152 -27.33995 -26.63227 -25.86940 -23.43060 -22.91994 -22.65462 -21.70831 -21.30770 -20.56191 -19.39741 -18.61071 -18.01964 -17.46304 -17.19271 -16.81636 -16.51972 -16.05294 -15.86136 -15.52342 -15.31326 -14.96280 -14.82338 -14.56145 -14.50561 -14.27312 -13.84581 -13.53490 -13.52748 -13.38306 -13.01335 -12.94839 -12.90518 -12.60587 -12.37897 -12.04153 -12.02524 -11.98156 -11.87060 -11.82724 -11.57157 -11.31082 -11.09236 -10.88570 -10.41138 -10.15283 -9.81872 -8.63474 -8.50040 -6.27561 0.26808 1.22043 1.27401 1.41104 1.59483 1.70728 2.01936 2.09953 2.45867 2.51642 2.83988 3.06489 3.39896 3.61783 3.69709 3.82908 4.14837 4.17505 4.24505 4.37997 4.38558 4.47588 4.50713 4.62461 4.80143 4.85195 4.93134 4.94736 4.97026 4.97242 5.00951 5.04402 5.12660 5.17883 5.23825 5.28782 5.34769 5.36413 5.41328 5.50165 5.90386 6.08374 6.20280 6.37708 6.65116 6.75067 7.06014 7.39948 7.61565 8.49432 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030694 B = 0.002431 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.008275 B =11513.824349 C =12215.266806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.129 4.129 4 C 0.128 3.872 5 H 0.077 0.923 6 C -0.116 4.116 7 C -0.126 4.126 8 C 0.083 3.917 9 N -0.584 5.584 10 C 0.530 3.470 11 O -0.543 6.543 12 C 0.487 3.513 13 O -0.534 6.534 14 N -0.584 5.584 15 C -0.055 4.055 16 C -0.047 4.047 17 N -0.307 5.307 18 N -0.163 5.163 19 C -0.352 4.352 20 H 0.141 0.859 21 C -0.006 4.006 22 N -0.820 5.820 23 Si 1.020 2.980 24 H -0.242 1.242 25 H -0.272 1.272 26 H -0.272 1.272 27 C -0.076 4.076 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.422 0.578 42 H 0.177 0.823 43 H 0.278 0.722 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 -20.240 -5.274 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.167 4.167 4 C 0.026 3.974 5 H 0.095 0.905 6 C -0.154 4.154 7 C -0.164 4.164 8 C -0.039 4.039 9 N -0.317 5.317 10 C 0.313 3.687 11 O -0.421 6.421 12 C 0.269 3.731 13 O -0.412 6.412 14 N -0.229 5.229 15 C -0.162 4.162 16 C -0.222 4.222 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.483 4.483 20 H 0.159 0.841 21 C -0.218 4.218 22 N -0.448 5.448 23 Si 0.839 3.161 24 H -0.165 1.165 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.227 4.227 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.259 0.741 42 H 0.193 0.807 43 H 0.088 0.912 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.506 -18.997 -5.846 21.246 hybrid contribution -0.480 0.136 0.953 1.076 sum -7.985 -18.861 -4.892 21.058 Atomic orbital electron populations 1.21767 0.95583 1.02167 1.01488 1.21446 0.96119 0.94647 1.02962 1.21967 0.93889 0.98857 1.01980 1.22044 0.94641 0.80588 1.00139 0.90538 1.22787 0.98483 1.00886 0.93224 1.22880 0.98461 0.92551 1.02522 1.22925 0.98067 0.99196 0.83691 1.48454 1.53902 1.15300 1.14014 1.19414 0.81503 0.84969 0.82853 1.90708 1.40827 1.74448 1.36129 1.20206 0.83206 0.86351 0.83342 1.90579 1.41082 1.73814 1.35682 1.42093 1.48248 1.13672 1.18856 1.17291 1.11000 0.89409 0.98471 1.24244 1.02561 0.94255 1.01168 1.78154 1.23725 1.16381 0.95594 1.44843 1.27401 1.10869 1.09987 1.20690 1.34179 0.92149 1.01310 0.84143 1.26892 0.94326 1.03267 0.97289 1.70380 1.24962 1.32751 1.16722 0.84521 0.78686 0.74632 0.78282 1.16458 1.19681 1.19675 1.21986 1.08551 0.90216 1.01973 0.91477 0.93925 0.92549 0.89726 0.92067 0.93220 0.91764 0.87377 0.88940 0.90322 0.87370 0.90832 0.89592 0.74107 0.80666 0.91218 0.79631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.11 -1.51 5.85 30.59 0.18 -1.33 16 3 C -0.13 -2.41 4.69 30.59 0.14 -2.27 16 4 C 0.13 2.39 2.92 45.34 0.13 2.52 16 5 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 6 C -0.12 -1.29 5.55 31.79 0.18 -1.12 16 7 C -0.13 -1.70 7.10 32.07 0.23 -1.47 16 8 C 0.08 1.85 6.25 86.93 0.54 2.40 16 9 N -0.58 -14.94 3.06 -789.33 -2.42 -17.36 16 10 C 0.53 17.04 7.72 87.23 0.67 17.71 16 11 O -0.54 -18.58 15.27 -3.30 -0.05 -18.63 16 12 C 0.49 18.22 7.82 87.23 0.68 18.91 16 13 O -0.53 -21.86 10.85 -3.39 -0.04 -21.89 16 14 N -0.58 -22.47 5.45 -305.34 -1.66 -24.14 16 15 C -0.06 -2.60 6.90 37.83 0.26 -2.34 16 16 C -0.05 -2.51 10.85 85.44 0.93 -1.59 16 17 N -0.31 -18.29 10.39 -56.43 -0.59 -18.88 16 18 N -0.16 -9.05 3.73 -189.98 -0.71 -9.76 16 19 C -0.35 -18.58 10.25 84.02 0.86 -17.72 16 20 H 0.14 6.46 7.83 -2.91 -0.02 6.44 16 21 C -0.01 -0.29 5.50 84.96 0.47 0.18 16 22 N -0.82 -46.79 11.81 21.66 0.26 -46.53 16 23 Si 1.02 38.30 29.55 68.60 2.03 40.33 16 24 H -0.24 -8.17 7.11 99.48 0.71 -7.47 16 25 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 27 C -0.08 -3.61 11.50 83.41 0.96 -2.65 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.77 7.36 -2.39 -0.02 0.76 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.26 6.55 -2.38 -0.02 1.24 16 34 H 0.06 1.19 8.01 -2.39 -0.02 1.17 16 35 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.85 7.76 -2.38 -0.02 0.83 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 2.40 5.87 -2.39 -0.01 2.38 16 41 H 0.42 13.90 8.29 -92.70 -0.77 13.13 16 42 H 0.18 9.18 5.92 -2.91 -0.02 9.16 16 43 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.19 7.07 8.06 -2.91 -0.02 7.05 16 Total: -1.00 -72.53 361.47 4.02 -68.50 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.26 Total: 38.41 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.95 Total: 9.94 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -5.12 Total: -116.66 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.09 Total: -40.52 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -72.53 4.02 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354846187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.929 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds