Wall clock time and date at job start Tue Mar 31 2020 12:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46861 * 2 1 4 4 C 1.52994 * 109.47355 * 239.99957 * 2 1 3 5 5 N 1.46497 * 109.47208 * 300.00021 * 4 2 1 6 6 C 1.34781 * 120.00253 * 180.02562 * 5 4 2 7 7 N 1.34773 * 119.99918 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99522 * 359.97438 * 6 5 4 9 9 N 1.46498 * 109.47557 * 119.99707 * 2 1 3 10 10 C 1.34779 * 119.99941 * 300.00481 * 9 2 1 11 11 O 1.21588 * 120.00022 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00371 * 179.97438 * 10 9 2 13 13 C 1.39954 * 120.00336 * 174.28572 * 12 10 9 14 14 C 1.39287 * 119.94740 * 145.42378 * 13 12 10 15 15 C 1.38481 * 120.43245 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32061 * 0.29710 * 15 14 13 17 17 C 1.40752 * 119.88240 * 359.43672 * 16 15 14 18 18 C 1.41401 * 120.20966 * 180.31427 * 17 16 15 19 19 H 1.08004 * 120.00096 * 214.41956 * 18 17 16 20 20 C 1.39932 * 120.00315 * 34.42435 * 18 17 16 21 21 N 1.30829 * 120.00139 * 5.53730 * 20 18 17 22 22 Si 1.86808 * 120.00106 * 185.53661 * 20 18 17 23 23 H 1.48498 * 109.46722 * 89.99858 * 22 20 18 24 24 H 1.48493 * 109.46917 * 210.00126 * 22 20 18 25 25 H 1.48503 * 109.46756 * 330.00215 * 22 20 18 26 26 C 1.38231 * 119.94527 * 325.40453 * 13 12 10 27 27 H 1.08999 * 109.47442 * 299.99903 * 1 2 3 28 28 H 1.09000 * 109.47352 * 60.00699 * 1 2 3 29 29 H 1.09006 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47302 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47292 * 299.99859 * 3 2 1 32 32 H 1.09006 * 109.47663 * 59.99897 * 3 2 1 33 33 H 1.08999 * 109.47484 * 59.99940 * 4 2 1 34 34 H 1.09004 * 109.47088 * 179.97438 * 4 2 1 35 35 H 0.96996 * 119.99956 * 359.97438 * 5 4 2 36 36 H 0.96996 * 120.00291 * 359.97438 * 7 6 5 37 37 H 0.97007 * 119.99464 * 179.97438 * 7 6 5 38 38 H 0.96997 * 120.00578 * 119.99826 * 9 2 1 39 39 H 0.97005 * 119.99647 * 354.29122 * 12 10 9 40 40 H 1.08004 * 119.78282 * 0.02562 * 14 13 12 41 41 H 1.07997 * 119.84132 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.06307 * 179.70456 * 16 15 14 43 43 H 0.97001 * 120.00167 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.16362 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -2.1024 -1.2492 6 6 1.8778 -2.9325 -2.2598 7 7 1.4290 -4.2033 -2.2595 8 8 2.5768 -2.5348 -3.1716 9 7 2.0184 -0.6905 1.1962 10 6 1.6928 -0.2300 2.4203 11 8 0.9940 0.7587 2.5318 12 7 2.1417 -0.8656 3.5208 13 6 1.9049 -0.3218 4.7884 14 6 1.6778 -1.1635 5.8748 15 6 1.4430 -0.6362 7.1336 16 6 1.4255 0.7273 7.3239 17 6 1.6590 1.5901 6.2366 18 6 1.6491 2.9914 6.4255 19 1 1.2781 3.6390 5.6448 20 6 2.1201 3.5393 7.6239 21 7 2.6691 2.7662 8.5254 22 14 1.9651 5.3745 7.9366 23 1 0.6698 5.6546 8.6066 24 1 3.0805 5.8240 8.8077 25 1 2.0217 6.1033 6.6440 26 6 1.8972 1.0498 4.9605 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9565 0.8900 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 0.9944 -2.4198 -0.5216 36 1 0.8716 -4.5207 -1.5318 37 1 1.6634 -4.8006 -2.9870 38 1 2.5761 -1.4792 1.1073 39 1 2.6289 -1.6999 3.4342 40 1 1.6857 -2.2343 5.7345 41 1 1.2685 -1.2977 7.9692 42 1 1.2373 1.1341 8.3065 43 1 2.9959 3.1460 9.3560 44 1 2.0739 1.7032 4.1189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365501241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:04 Heat of formation + Delta-G solvation = -67.351162 kcal Electronic energy + Delta-G solvation = -26750.740053 eV Core-core repulsion = 22894.622035 eV Total energy + Delta-G solvation = -3856.118019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76052 -40.79746 -39.44063 -37.95627 -36.04877 -35.00571 -34.83508 -34.12149 -32.45769 -31.68486 -29.49550 -28.28843 -27.24370 -27.19068 -23.87126 -22.75581 -22.15555 -21.86119 -20.77286 -19.64187 -19.42038 -18.94435 -18.27169 -17.41573 -16.99376 -16.54159 -16.46415 -16.20745 -16.09885 -15.73872 -15.64336 -15.15407 -14.89993 -14.67141 -14.43442 -14.08955 -13.86107 -13.66073 -13.49984 -13.07421 -13.05541 -12.90484 -12.83667 -12.71717 -12.27332 -12.21290 -12.16224 -11.84985 -11.49147 -11.43316 -11.13756 -10.84763 -10.70690 -10.63306 -10.12540 -10.00547 -9.26980 -8.66532 -8.47721 -6.36468 0.96636 1.06099 1.37292 1.47610 1.51880 1.67049 1.94439 2.19322 2.24092 2.28444 2.82898 3.27338 3.51638 3.66671 3.74613 3.93050 4.03761 4.50278 4.54717 4.65414 4.68950 4.70810 4.78532 4.88685 4.93589 5.07664 5.14439 5.16891 5.22017 5.29689 5.36590 5.41232 5.45513 5.59927 5.78426 5.86836 5.87804 6.06319 6.08746 6.15859 6.22022 6.42951 6.74217 6.99766 7.04764 7.06263 7.16006 7.66183 7.69593 8.44392 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.002716 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.077421 B =10306.440234 C =11223.383947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.191 3.809 3 C -0.164 4.164 4 C 0.148 3.852 5 N -0.732 5.732 6 C 0.701 3.299 7 N -0.849 5.849 8 O -0.645 6.645 9 N -0.722 5.722 10 C 0.699 3.301 11 O -0.600 6.600 12 N -0.672 5.672 13 C 0.175 3.825 14 C -0.239 4.239 15 C -0.096 4.096 16 C -0.186 4.186 17 C 0.088 3.912 18 C -0.506 4.506 19 H 0.060 0.940 20 C 0.033 3.967 21 N -0.839 5.839 22 Si 0.981 3.019 23 H -0.261 1.261 24 H -0.265 1.265 25 H -0.266 1.266 26 C -0.221 4.221 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.413 0.587 37 H 0.420 0.580 38 H 0.409 0.591 39 H 0.416 0.584 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -13.552 -15.958 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.104 3.896 3 C -0.223 4.223 4 C 0.023 3.977 5 N -0.390 5.390 6 C 0.399 3.601 7 N -0.417 5.417 8 O -0.527 6.527 9 N -0.380 5.380 10 C 0.400 3.600 11 O -0.478 6.478 12 N -0.321 5.321 13 C 0.081 3.919 14 C -0.260 4.260 15 C -0.115 4.115 16 C -0.206 4.206 17 C 0.086 3.914 18 C -0.537 4.537 19 H 0.079 0.921 20 C -0.179 4.179 21 N -0.467 5.467 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.189 1.189 25 H -0.190 1.190 26 C -0.243 4.243 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.244 0.756 37 H 0.253 0.747 38 H 0.245 0.755 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.842 -12.178 -16.386 20.499 hybrid contribution 0.129 -0.168 0.739 0.769 sum -1.713 -12.346 -15.647 20.005 Atomic orbital electron populations 1.22202 0.93740 1.02755 1.03125 1.20357 0.94687 0.92249 0.82282 1.22183 1.01404 0.95321 1.03394 1.21371 0.99489 0.80588 0.96270 1.44951 1.56685 1.11835 1.25551 1.16141 0.79819 0.82057 0.82080 1.42811 1.57589 1.10696 1.30642 1.90958 1.45116 1.77355 1.39241 1.45091 1.56621 1.33617 1.02714 1.16110 0.80117 0.82778 0.81039 1.90930 1.42710 1.28337 1.85835 1.42379 1.59367 1.27358 1.02980 1.17237 0.99312 0.91605 0.83747 1.20503 1.14963 0.98509 0.92060 1.20841 0.99399 0.94522 0.96690 1.21294 1.07139 0.93107 0.99058 1.17826 0.88200 0.94109 0.91296 1.19660 1.40084 0.92650 1.01310 0.92147 1.26619 0.92061 1.04905 0.94317 1.69832 1.30336 1.38981 1.07550 0.85221 0.79113 0.76532 0.78882 1.18547 1.18908 1.19043 1.21031 1.12556 0.93617 0.97110 0.93028 0.90292 0.91310 0.92138 0.89689 0.92916 0.89471 0.90828 0.75351 0.75620 0.74665 0.75471 0.74696 0.84839 0.85926 0.88337 0.90478 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.23 71.98 0.59 -2.62 16 2 C 0.19 3.65 0.72 3.60 0.00 3.65 16 3 C -0.16 -3.82 8.40 71.98 0.60 -3.22 16 4 C 0.15 2.29 4.60 86.38 0.40 2.69 16 5 N -0.73 -9.11 4.98 -478.55 -2.38 -11.50 16 6 C 0.70 11.57 8.84 179.05 1.58 13.16 16 7 N -0.85 -6.55 8.88 -184.75 -1.64 -8.19 16 8 O -0.64 -17.28 17.18 -3.98 -0.07 -17.35 16 9 N -0.72 -14.79 4.83 -438.02 -2.12 -16.90 16 10 C 0.70 22.27 7.70 179.05 1.38 23.65 16 11 O -0.60 -25.21 10.33 -3.99 -0.04 -25.25 16 12 N -0.67 -21.18 5.34 -317.33 -1.70 -22.88 16 13 C 0.18 7.49 6.25 38.09 0.24 7.73 16 14 C -0.24 -9.55 9.97 22.58 0.23 -9.32 16 15 C -0.10 -4.26 10.02 22.20 0.22 -4.04 16 16 C -0.19 -9.93 8.62 22.75 0.20 -9.74 16 17 C 0.09 5.04 5.50 -21.30 -0.12 4.92 16 18 C -0.51 -29.47 9.04 23.46 0.21 -29.26 16 19 H 0.06 3.54 7.85 -2.91 -0.02 3.52 16 20 C 0.03 1.78 5.31 85.25 0.45 2.23 16 21 N -0.84 -45.67 10.97 21.82 0.24 -45.43 16 22 Si 0.98 41.00 29.56 68.60 2.03 43.03 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 C -0.22 -11.63 8.39 22.85 0.19 -11.44 16 27 H 0.05 1.50 6.16 -2.39 -0.01 1.48 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.10 6.86 -2.38 -0.02 1.08 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.70 6.16 -2.38 -0.01 1.68 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.41 3.48 7.17 -92.71 -0.66 2.81 16 36 H 0.41 0.66 8.84 -92.71 -0.82 -0.16 16 37 H 0.42 2.68 8.93 -92.70 -0.83 1.85 16 38 H 0.41 5.77 8.33 -92.71 -0.77 5.00 16 39 H 0.42 9.18 8.84 -92.70 -0.82 8.36 16 40 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.10 5.53 6.48 -2.91 -0.02 5.51 16 43 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 44 H 0.09 4.80 6.51 -2.91 -0.02 4.78 16 Total: -1.00 -78.86 362.24 -2.30 -81.17 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -2.80 Total: 34.91 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 6.18 Total: -11.61 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -7.60 Total: -104.89 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.11 Total: -42.60 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -78.86 -2.30 -81.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365501241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.814 kcal (2) G-P(sol) polarization free energy of solvation -78.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds