Wall clock time and date at job start Tue Mar 31 2020 12:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47190 * 2 1 4 4 C 1.53005 * 109.47099 * 240.00458 * 2 1 3 5 5 C 1.52998 * 109.47246 * 120.00394 * 2 1 3 6 6 H 1.09007 * 109.46956 * 296.54694 * 5 2 1 7 7 N 1.46500 * 109.47386 * 176.54851 * 5 2 1 8 8 C 1.34772 * 120.00194 * 84.99519 * 7 5 2 9 9 N 1.34773 * 120.00086 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99794 * 0.02562 * 8 7 5 11 11 C 1.50696 * 109.47096 * 56.54590 * 5 2 1 12 12 O 1.21277 * 120.00236 * 100.45932 * 11 5 2 13 13 N 1.34782 * 120.00139 * 280.73342 * 11 5 2 14 14 C 1.39469 * 119.99967 * 184.61288 * 13 11 5 15 15 C 1.38596 * 119.57993 * 16.82565 * 14 13 11 16 16 C 1.40816 * 118.79000 * 179.75915 * 15 14 13 17 17 C 1.41545 * 120.99319 * 180.26416 * 16 15 14 18 18 H 1.08002 * 120.00036 * 207.20149 * 17 16 15 19 19 C 1.40033 * 119.99909 * 27.20318 * 17 16 15 20 20 N 1.30737 * 120.00362 * 13.90177 * 19 17 16 21 21 Si 1.86806 * 119.99819 * 193.90583 * 19 17 16 22 22 H 1.48495 * 109.46965 * 59.99874 * 21 19 17 23 23 H 1.48500 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46960 * 299.99996 * 21 19 17 25 25 C 1.41168 * 118.00775 * 0.50614 * 16 15 14 26 26 C 1.37584 * 119.01846 * 359.75418 * 25 16 15 27 27 N 1.32078 * 121.10915 * 359.97438 * 26 25 16 28 28 H 1.08994 * 109.47448 * 296.80020 * 1 2 3 29 29 H 1.09011 * 109.47272 * 56.79668 * 1 2 3 30 30 H 1.09000 * 109.47480 * 176.79506 * 1 2 3 31 31 H 1.08998 * 109.47155 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47287 * 300.00157 * 3 2 1 33 33 H 1.08998 * 109.46781 * 60.00185 * 3 2 1 34 34 H 1.09000 * 109.46864 * 299.99400 * 4 2 1 35 35 H 1.08995 * 109.47296 * 59.99893 * 4 2 1 36 36 H 1.09005 * 109.47325 * 180.02562 * 4 2 1 37 37 H 0.97005 * 119.99663 * 265.00016 * 7 5 2 38 38 H 0.97000 * 120.00303 * 0.02562 * 9 8 7 39 39 H 0.97008 * 120.00046 * 180.02562 * 9 8 7 40 40 H 0.96998 * 119.99613 * 4.62015 * 13 11 5 41 41 H 1.07994 * 120.60098 * 0.02697 * 15 14 13 42 42 H 0.97000 * 120.00542 * 179.97438 * 20 19 17 43 43 H 1.08004 * 120.49066 * 179.78160 * 25 16 15 44 44 H 1.08005 * 119.44718 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.7280 -0.1730 2.1382 7 7 3.5026 -0.7938 1.2083 8 6 4.2413 0.2388 1.6605 9 7 5.5869 0.1723 1.6225 10 8 3.6938 1.2303 2.1028 11 6 1.4689 -2.1152 1.2926 12 8 2.1445 -3.0586 0.9398 13 7 0.2055 -2.3130 1.7184 14 6 -0.2910 -3.6097 1.8502 15 6 0.5898 -4.6791 1.8870 16 6 0.0708 -5.9807 2.0257 17 6 0.9281 -7.1060 2.0742 18 1 0.5715 -8.0711 1.7457 19 6 2.2385 -6.9679 2.5480 20 7 2.5899 -5.8863 3.1929 21 14 3.4847 -8.3291 2.2585 22 1 3.6518 -8.5449 0.7989 23 1 4.7888 -7.9411 2.8536 24 1 3.0042 -9.5830 2.8925 25 6 -1.3305 -6.1302 2.1097 26 6 -2.1256 -5.0085 2.0584 27 7 -1.5988 -3.8038 1.9331 28 1 -0.3634 0.4633 0.9172 29 1 -0.3634 0.5628 -0.8600 30 1 -0.3634 -1.0260 -0.0575 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 3.9393 -1.5849 0.8557 38 1 6.0237 -0.6185 1.2693 39 1 6.1186 0.9154 1.9483 40 1 -0.3584 -1.5535 1.9330 41 1 1.6551 -4.5167 1.8151 42 1 3.4976 -5.7907 3.5215 43 1 -1.7718 -7.1105 2.2131 44 1 -3.1985 -5.1148 2.1216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412645654.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:48 Heat of formation + Delta-G solvation = -33.606687 kcal Electronic energy + Delta-G solvation = -28218.371765 eV Core-core repulsion = 24363.717017 eV Total energy + Delta-G solvation = -3854.654748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92796 -39.46655 -38.01808 -36.64851 -34.59574 -33.98761 -33.64765 -32.86851 -30.57230 -29.15220 -27.20816 -27.09823 -26.73864 -25.90033 -22.44503 -21.53049 -21.20553 -20.13553 -18.98149 -18.53155 -18.05698 -17.28463 -16.25108 -16.07006 -15.87807 -15.32499 -15.02223 -14.66769 -14.39870 -14.29396 -14.10768 -13.87307 -13.50690 -13.26851 -12.87911 -12.65433 -12.55430 -12.31014 -12.14378 -11.94457 -11.57526 -11.45399 -11.29601 -11.16131 -10.95834 -10.78589 -10.76131 -10.44683 -10.26649 -10.24279 -9.78087 -9.68297 -9.32871 -9.10742 -8.76720 -8.11339 -7.91906 -7.04336 -6.77925 -4.56037 2.41797 2.74813 2.84561 3.03806 3.06550 3.09916 3.19394 3.34549 3.57412 3.89307 4.44061 4.64700 4.71940 4.77656 4.89908 5.11960 5.36313 5.52711 5.66916 5.67625 5.74007 5.85273 5.87775 5.94435 6.00044 6.10230 6.20912 6.32023 6.41339 6.47439 6.49525 6.65967 6.71400 6.78768 6.86639 7.01801 7.13238 7.35951 7.56771 7.81789 7.87955 7.94967 8.29938 8.43682 8.60191 8.67257 8.78742 8.85164 9.51590 10.13630 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.004737 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.228705 B = 5909.097517 C = 7506.322294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.072 4.072 3 C -0.127 4.127 4 C -0.142 4.142 5 C 0.160 3.840 6 H 0.109 0.891 7 N -0.723 5.723 8 C 0.710 3.290 9 N -0.868 5.868 10 O -0.593 6.593 11 C 0.509 3.491 12 O -0.498 6.498 13 N -0.643 5.643 14 C 0.314 3.686 15 C -0.216 4.216 16 C 0.135 3.865 17 C -0.454 4.454 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.779 5.779 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.286 4.286 26 C 0.120 3.880 27 N -0.600 5.600 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.408 0.592 38 H 0.398 0.602 39 H 0.413 0.587 40 H 0.403 0.597 41 H 0.172 0.828 42 H 0.282 0.718 43 H 0.101 0.899 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 10.655 -5.015 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.199 4.199 5 C 0.050 3.950 6 H 0.127 0.873 7 N -0.380 5.380 8 C 0.408 3.592 9 N -0.436 5.436 10 O -0.471 6.471 11 C 0.294 3.706 12 O -0.372 6.372 13 N -0.288 5.288 14 C 0.093 3.907 15 C -0.240 4.240 16 C 0.126 3.874 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.403 5.403 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.190 1.190 25 C -0.310 4.310 26 C -0.034 4.034 27 N -0.320 5.320 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.244 0.756 38 H 0.226 0.774 39 H 0.245 0.755 40 H 0.239 0.761 41 H 0.189 0.811 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.467 11.627 -4.814 13.354 hybrid contribution 1.406 -1.471 -0.006 2.035 sum 5.873 10.156 -4.820 12.684 Atomic orbital electron populations 1.22117 0.93640 1.03213 1.02546 1.20885 0.96062 0.96380 0.94085 1.21855 1.01480 0.93677 1.01376 1.21868 1.01176 1.00626 0.96247 1.20671 0.80290 0.93445 1.00581 0.87322 1.44733 1.05460 1.20034 1.67750 1.15794 0.81794 0.83209 0.78380 1.42946 1.05413 1.23994 1.71245 1.90965 1.71168 1.32007 1.52971 1.20308 0.81897 0.90546 0.77846 1.90663 1.59154 1.42068 1.45354 1.43204 1.13324 1.07761 1.64495 1.18108 0.89697 0.83518 0.99370 1.22851 1.02582 0.90838 1.07690 1.17796 0.91009 0.93017 0.85571 1.19532 0.95592 0.95806 1.37578 0.90106 1.25936 0.99092 0.96670 0.92484 1.69737 1.19972 1.26281 1.24358 0.86304 0.78994 0.81122 0.79926 1.18730 1.20267 1.18962 1.21871 0.95082 0.97983 1.16112 1.21500 0.97732 0.87288 0.96930 1.66565 1.11986 1.26608 1.26879 0.92020 0.91694 0.91296 0.92362 0.93384 0.91829 0.92024 0.92533 0.92524 0.75552 0.77446 0.75467 0.76132 0.81130 0.90700 0.88036 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 7.17 37.15 0.27 -1.60 16 2 C -0.07 -0.91 0.62 -154.51 -0.10 -1.00 16 3 C -0.13 -1.53 7.04 37.16 0.26 -1.27 16 4 C -0.14 -1.79 8.08 37.16 0.30 -1.49 16 5 C 0.16 2.31 1.96 -69.08 -0.14 2.18 16 6 H 0.11 1.60 7.58 -51.93 -0.39 1.21 16 7 N -0.72 -9.61 4.07 -59.81 -0.24 -9.85 16 8 C 0.71 9.25 7.33 -86.92 -0.64 8.62 16 9 N -0.87 -7.63 8.88 27.63 0.25 -7.39 16 10 O -0.59 -9.47 14.31 5.28 0.08 -9.40 16 11 C 0.51 9.26 5.34 -10.99 -0.06 9.20 16 12 O -0.50 -10.67 12.37 5.56 0.07 -10.60 16 13 N -0.64 -12.30 4.20 -11.49 -0.05 -12.35 16 14 C 0.31 7.50 7.53 -154.70 -1.17 6.34 16 15 C -0.22 -5.72 7.51 -38.47 -0.29 -6.01 16 16 C 0.13 3.63 5.57 -106.55 -0.59 3.03 16 17 C -0.45 -12.02 9.12 -37.65 -0.34 -12.36 16 18 H 0.08 2.03 7.88 -52.49 -0.41 1.61 16 19 C 0.08 1.96 5.23 -17.34 -0.09 1.87 16 20 N -0.78 -20.17 10.98 55.55 0.61 -19.56 16 21 Si 0.91 18.59 29.58 -169.99 -5.03 13.56 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 25 C -0.29 -6.99 9.90 -38.71 -0.38 -7.37 16 26 C 0.12 2.73 11.15 -17.68 -0.20 2.53 16 27 N -0.60 -14.08 10.36 -12.52 -0.13 -14.21 16 28 H 0.06 0.66 7.97 -51.93 -0.41 0.24 16 29 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.07 0.96 6.15 -51.93 -0.32 0.64 16 31 H 0.06 0.76 5.69 -51.93 -0.30 0.46 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 34 H 0.06 0.92 7.13 -51.93 -0.37 0.55 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 37 H 0.41 5.32 7.75 -40.82 -0.32 5.00 16 38 H 0.40 2.61 8.84 -40.82 -0.36 2.25 16 39 H 0.41 3.01 8.93 -40.82 -0.36 2.65 16 40 H 0.40 6.56 7.34 -40.82 -0.30 6.26 16 41 H 0.17 4.69 3.46 -52.86 -0.18 4.50 16 42 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 43 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 44 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -31.85 352.45 -8.07 -39.92 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -5.77 Total: 21.88 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -3.16 Total: 2.67 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.43 Total: -63.35 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.14 Total: -20.00 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.85 -8.07 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412645654.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.316 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds