Wall clock time and date at job start Tue Mar 31 2020 13:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46715 * 2 1 4 4 N 1.46504 * 109.46775 * 299.99866 * 3 2 1 5 5 C 1.36939 * 119.99751 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99722 * 359.97438 * 5 4 3 7 7 C 1.38814 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31623 * 119.99515 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00008 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47274 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46800 * 120.00530 * 9 7 5 12 12 H 1.48507 * 109.47255 * 240.00309 * 9 7 5 13 13 N 1.46496 * 109.47518 * 240.00094 * 2 1 3 14 14 C 1.34772 * 120.00358 * 183.93387 * 13 2 1 15 15 O 1.21685 * 119.99849 * 5.19421 * 14 13 2 16 16 C 1.46809 * 120.00570 * 185.19312 * 14 13 2 17 17 C 1.36349 * 125.85095 * 180.02562 * 16 14 13 18 18 C 1.41303 * 107.01026 * 179.97438 * 17 16 14 19 19 C 1.47393 * 126.46571 * 179.97438 * 18 17 16 20 20 N 1.34776 * 120.00336 * 179.97438 * 19 18 17 21 21 O 1.21612 * 119.99646 * 359.97438 * 19 18 17 22 22 C 1.38208 * 107.07531 * 359.97438 * 18 17 16 23 23 N 1.34264 * 108.39717 * 359.77056 * 22 18 17 24 24 H 0.97004 * 125.39726 * 180.22502 * 23 22 18 25 25 C 1.52998 * 109.47088 * 119.99229 * 2 1 3 26 26 C 1.53000 * 117.51971 * 348.46466 * 25 2 1 27 27 C 1.53005 * 117.49451 * 57.09430 * 25 2 1 28 28 H 1.08994 * 109.47629 * 300.00170 * 1 2 3 29 29 H 1.09001 * 109.47509 * 60.00527 * 1 2 3 30 30 H 1.09007 * 109.46852 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47211 * 59.99574 * 3 2 1 32 32 H 1.08996 * 109.46899 * 179.97438 * 3 2 1 33 33 H 0.97002 * 119.99975 * 359.97438 * 4 3 2 34 34 H 0.97000 * 119.99407 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99662 * 3.92809 * 13 2 1 36 36 H 1.08000 * 126.49774 * 359.97438 * 17 16 14 37 37 H 0.97005 * 119.99759 * 359.97438 * 20 19 18 38 38 H 0.96995 * 120.00277 * 179.97438 * 20 19 18 39 39 H 1.07996 * 125.80516 * 180.02562 * 22 18 17 40 40 H 1.09000 * 115.54884 * 202.75763 * 25 2 1 41 41 H 1.08997 * 117.49732 * 214.96791 * 26 25 2 42 42 H 1.09004 * 117.49876 * 359.97438 * 26 25 2 43 43 H 1.08996 * 117.50033 * 359.96988 * 27 25 2 44 44 H 1.09001 * 117.49547 * 144.99490 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1331 -1.1962 5 6 1.8827 3.4440 -1.4132 6 1 2.5035 3.9689 -0.7023 7 6 1.4203 4.0982 -2.5469 8 7 0.6633 3.4585 -3.4130 9 14 1.8715 5.8866 -2.8426 10 1 2.7251 6.3723 -1.7289 11 1 2.6144 6.0044 -4.1230 12 1 0.6338 6.7045 -2.9113 13 7 2.0184 -0.6906 -1.1961 14 6 3.3409 -0.8835 -1.3701 15 8 4.1223 -0.5696 -0.4918 16 6 3.8387 -1.4724 -2.6194 17 6 5.1454 -1.7198 -2.9204 18 6 5.1712 -2.2869 -4.2144 19 6 6.3685 -2.7174 -4.9585 20 7 6.2418 -3.2452 -6.1921 21 8 7.4708 -2.5963 -4.4592 22 6 3.8620 -2.3617 -4.6509 23 7 3.0651 -1.8757 -3.6858 24 1 2.0981 -1.8154 -3.7329 25 6 2.0400 -0.7211 1.2493 26 6 1.0222 -1.0408 2.3460 27 6 1.5803 -2.1638 1.4694 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6765 1.9564 0.8899 32 1 3.1299 1.4426 0.0005 33 1 0.9942 1.6615 -1.8349 34 1 0.3399 3.9157 -4.2050 35 1 1.3899 -1.0090 -1.8628 36 1 5.9989 -1.5203 -2.2895 37 1 5.3625 -3.3421 -6.5902 38 1 7.0297 -3.5281 -6.6819 39 1 3.5351 -2.7494 -5.6044 40 1 3.0517 -0.4620 1.5616 41 1 1.3643 -0.9920 3.3798 42 1 -0.0111 -0.7370 2.1778 43 1 0.9142 -2.5989 0.7244 44 1 2.2896 -2.8538 1.9264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753526509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:55 Heat of formation + Delta-G solvation = 11.717699 kcal Electronic energy + Delta-G solvation = -27350.351755 eV Core-core repulsion = 23497.662420 eV Total energy + Delta-G solvation = -3852.689335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57934 -39.87732 -38.80827 -37.40745 -35.01605 -33.75506 -33.52993 -31.59402 -31.09000 -29.76330 -28.88309 -26.23447 -24.08035 -23.47215 -22.98525 -22.15643 -21.39402 -20.25339 -19.75237 -19.02813 -18.71888 -17.30511 -17.04101 -16.33312 -16.01944 -15.76587 -15.22457 -15.15637 -14.52088 -14.44973 -14.14227 -13.97149 -13.64609 -13.49649 -13.29811 -13.12002 -12.82591 -12.46950 -12.31059 -12.11572 -11.90816 -11.32513 -11.11366 -10.92073 -10.84167 -10.68702 -10.33445 -10.13766 -10.13479 -9.92128 -9.77142 -9.69326 -9.49147 -9.14667 -8.86201 -8.73232 -8.35075 -6.89734 -5.78868 -3.04585 1.45880 1.86263 2.90194 3.20988 3.43287 3.43685 3.50084 3.52122 3.58974 3.70924 4.10619 4.56219 4.67812 4.75486 4.85604 4.99990 5.06508 5.14913 5.23941 5.31279 5.40376 5.58651 5.60983 5.73527 5.78361 5.90183 5.96342 5.98141 6.15350 6.18781 6.23982 6.38511 6.47548 6.50043 6.56372 6.67458 6.71981 6.86552 7.02040 7.12871 7.30484 7.72496 7.78793 8.28814 8.41256 8.49976 9.53183 10.09475 10.45264 11.44721 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.004628 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.420542 B = 6049.230266 C = 8408.249908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.203 3.797 3 C 0.145 3.855 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.939 5.939 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.710 5.710 14 C 0.597 3.403 15 O -0.518 6.518 16 C -0.043 4.043 17 C -0.051 4.051 18 C -0.241 4.241 19 C 0.596 3.404 20 N -0.857 5.857 21 O -0.547 6.547 22 C 0.068 3.932 23 N -0.519 5.519 24 H 0.422 0.578 25 C -0.143 4.143 26 C -0.182 4.182 27 C -0.174 4.174 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.380 0.620 34 H 0.252 0.748 35 H 0.389 0.611 36 H 0.157 0.843 37 H 0.397 0.603 38 H 0.402 0.598 39 H 0.178 0.822 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -17.962 -1.557 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.117 3.883 3 C 0.017 3.983 4 N -0.371 5.371 5 C -0.360 4.360 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.588 5.588 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.360 5.360 14 C 0.384 3.616 15 O -0.393 6.393 16 C -0.155 4.155 17 C -0.076 4.076 18 C -0.251 4.251 19 C 0.383 3.617 20 N -0.421 5.421 21 O -0.424 6.424 22 C -0.075 4.075 23 N -0.113 5.113 24 H 0.260 0.740 25 C -0.162 4.162 26 C -0.220 4.220 27 C -0.212 4.212 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.214 0.786 34 H 0.062 0.938 35 H 0.222 0.778 36 H 0.174 0.826 37 H 0.225 0.775 38 H 0.232 0.768 39 H 0.195 0.805 40 H 0.135 0.865 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.225 -17.326 -0.312 17.330 hybrid contribution -0.926 0.622 -1.485 1.858 sum -0.701 -16.703 -1.798 16.815 Atomic orbital electron populations 1.22136 0.93476 1.01287 1.04339 1.20046 0.93474 0.92360 0.82373 1.21027 0.98017 0.88088 0.91173 1.42249 1.61266 1.10526 1.23032 1.19303 1.24877 0.87565 1.04278 0.91188 1.24660 1.00724 0.98273 0.97415 1.69646 1.39962 1.36026 1.13210 0.86124 0.77474 0.85043 0.77674 1.20528 1.21978 1.21972 1.45830 1.06431 1.59781 1.23941 1.16831 0.82417 0.77725 0.84645 1.90801 1.55811 1.50859 1.41866 1.20323 0.91442 1.12567 0.91155 1.21035 0.95099 0.96899 0.94575 1.19524 0.91896 1.15364 0.98336 1.17422 0.87923 0.75775 0.80603 1.43676 1.12532 1.67353 1.18502 1.90822 1.27268 1.55661 1.68673 1.22314 0.89912 1.00921 0.94327 1.41761 1.09755 1.46307 1.13446 0.73987 1.22606 0.99986 0.97210 0.96402 1.23143 0.99420 1.03432 0.95960 1.22790 1.03648 0.91683 1.03051 0.90469 0.90677 0.92872 0.95431 0.94234 0.78600 0.93814 0.77835 0.82551 0.77458 0.76779 0.80490 0.86477 0.89117 0.88222 0.89389 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 7.04 37.16 0.26 -1.87 16 2 C 0.20 3.19 0.54 -131.82 -0.07 3.12 16 3 C 0.15 3.02 5.02 -4.04 -0.02 2.99 16 4 N -0.73 -17.82 5.17 -59.91 -0.31 -18.13 16 5 C -0.23 -6.43 9.99 -15.06 -0.15 -6.58 16 6 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -27.50 13.06 55.49 0.72 -26.78 16 9 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 N -0.71 -10.41 4.71 -48.86 -0.23 -10.64 16 14 C 0.60 10.07 7.20 -12.80 -0.09 9.98 16 15 O -0.52 -10.40 13.67 5.20 0.07 -10.33 16 16 C -0.04 -0.64 6.99 -82.41 -0.58 -1.21 16 17 C -0.05 -0.79 10.37 -39.10 -0.41 -1.19 16 18 C -0.24 -3.08 6.13 -105.02 -0.64 -3.72 16 19 C 0.60 7.75 8.09 -12.53 -0.10 7.65 16 20 N -0.86 -6.54 8.86 30.43 0.27 -6.27 16 21 O -0.55 -9.62 17.76 5.27 0.09 -9.52 16 22 C 0.07 0.61 11.43 -16.50 -0.19 0.42 16 23 N -0.52 -5.32 5.91 -9.31 -0.05 -5.37 16 24 H 0.42 3.14 8.15 -40.82 -0.33 2.81 16 25 C -0.14 -2.07 4.05 -90.62 -0.37 -2.43 16 26 C -0.18 -2.15 9.61 -26.73 -0.26 -2.40 16 27 C -0.17 -2.08 9.81 -26.73 -0.26 -2.35 16 28 H 0.08 1.05 6.84 -51.93 -0.36 0.69 16 29 H 0.07 1.18 6.86 -51.93 -0.36 0.82 16 30 H 0.05 0.59 7.01 -51.92 -0.36 0.22 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.93 6.64 -51.93 -0.34 0.59 16 33 H 0.38 9.39 6.35 -40.82 -0.26 9.13 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.39 4.62 7.57 -40.82 -0.31 4.32 16 36 H 0.16 2.63 8.06 -52.49 -0.42 2.21 16 37 H 0.40 1.67 7.74 -40.82 -0.32 1.35 16 38 H 0.40 2.58 8.93 -40.82 -0.36 2.21 16 39 H 0.18 0.71 7.44 -52.49 -0.39 0.32 16 40 H 0.12 1.97 7.17 -51.93 -0.37 1.60 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.10 5.87 -51.93 -0.31 0.79 16 43 H 0.09 0.97 7.42 -51.93 -0.39 0.58 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -37.43 364.39 -7.63 -45.06 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -5.69 Total: 16.99 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.97 Total: 1.86 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: 0.40 Total: -67.20 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.16 Total: -19.86 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.43 -7.63 -45.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753526509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.781 kcal (2) G-P(sol) polarization free energy of solvation -37.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds