Wall clock time and date at job start Tue Mar 31 2020 14:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.45182 * 2 1 4 4 C 1.53038 * 109.46328 * 119.96957 * 2 1 3 5 5 C 1.53186 * 109.31594 * 181.38496 * 4 2 1 6 6 N 1.46931 * 108.77407 * 305.36316 * 5 4 2 7 7 C 1.36932 * 120.62741 * 233.60750 * 6 5 4 8 8 H 1.08000 * 120.00358 * 27.68326 * 7 6 5 9 9 C 1.38819 * 120.00090 * 207.67802 * 7 6 5 10 10 N 1.31621 * 119.99419 * 17.36275 * 9 7 6 11 11 Si 1.86794 * 120.00418 * 197.36300 * 9 7 6 12 12 H 1.48502 * 109.47256 * 89.99785 * 11 9 7 13 13 H 1.48500 * 109.47140 * 210.00369 * 11 9 7 14 14 H 1.48506 * 109.47050 * 330.00047 * 11 9 7 15 15 C 1.46923 * 118.73725 * 53.60763 * 6 5 4 16 16 C 1.53049 * 109.45866 * 240.03315 * 2 1 3 17 17 H 1.09000 * 109.52342 * 298.58187 * 16 2 1 18 18 N 1.46499 * 109.49309 * 58.66191 * 16 2 1 19 19 C 1.34778 * 119.99634 * 204.83540 * 18 16 2 20 20 O 1.21566 * 120.00345 * 0.02562 * 19 18 16 21 21 C 1.47723 * 119.99695 * 180.02562 * 19 18 16 22 22 C 1.40944 * 125.97273 * 179.71465 * 21 19 18 23 23 C 1.36179 * 107.95163 * 179.97438 * 22 21 19 24 24 N 1.35801 * 107.31278 * 0.05132 * 23 22 21 25 25 N 1.31846 * 125.97679 * 0.02897 * 21 19 18 26 26 C 1.47426 * 108.06739 * 180.45147 * 24 23 22 27 27 C 1.54647 * 102.35123 * 15.28187 * 26 24 23 28 28 O 1.36120 * 140.87054 * 179.28045 * 23 22 21 29 29 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46923 * 299.96102 * 1 2 3 31 31 H 1.08993 * 109.47582 * 59.96428 * 1 2 3 32 32 H 1.09007 * 109.49317 * 301.33608 * 4 2 1 33 33 H 1.08998 * 109.49954 * 61.43121 * 4 2 1 34 34 H 1.09001 * 109.58599 * 65.15060 * 5 4 2 35 35 H 1.09004 * 109.59171 * 185.43361 * 5 4 2 36 36 H 0.97006 * 119.99875 * 179.97438 * 10 9 7 37 37 H 1.08998 * 109.58358 * 186.60649 * 15 6 5 38 38 H 1.08997 * 109.58828 * 66.18055 * 15 6 5 39 39 H 0.96995 * 120.00132 * 24.84228 * 18 16 2 40 40 H 1.08004 * 126.02420 * 0.07964 * 22 21 19 41 41 H 1.09005 * 110.83015 * 133.49808 * 26 24 23 42 42 H 1.08999 * 110.82840 * 256.86309 * 26 24 23 43 43 H 1.08996 * 110.85633 * 93.34842 * 27 26 24 44 44 H 1.09007 * 110.84688 * 216.77474 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5713 -0.6886 1.2642 6 7 4.0678 -1.2489 -0.0002 7 6 4.9760 -2.2737 -0.0001 8 1 5.0090 -2.9661 0.8281 9 6 5.8543 -2.4228 -1.0648 10 7 6.0603 -1.4210 -1.8932 11 14 6.7437 -4.0452 -1.3217 12 1 5.9264 -4.9249 -2.1955 13 1 8.0584 -3.7926 -1.9643 14 1 6.9535 -4.7080 -0.0094 15 6 3.5713 -0.6886 -1.2643 16 6 2.0398 -0.7208 -1.2502 17 1 1.6977 -1.7557 -1.2389 18 7 1.5254 -0.0487 -2.4459 19 6 1.4000 -0.7314 -3.6012 20 8 1.7133 -1.9050 -3.6509 21 6 0.8819 -0.0535 -4.8071 22 6 0.7052 -0.6415 -6.0759 23 6 0.2085 0.3101 -6.9139 24 7 0.0797 1.4547 -6.1946 25 7 0.5093 1.2087 -4.8863 26 6 -0.4680 2.4948 -7.0844 27 6 -0.9918 1.6651 -8.2798 28 8 -0.1784 0.4797 -8.2079 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5132 0.8903 31 1 -0.3634 0.5143 -0.8896 32 1 1.6572 -0.2207 2.1398 33 1 1.6978 -1.7557 1.2382 34 1 3.9143 0.3409 1.3673 35 1 3.9417 -1.2825 2.0998 36 1 6.6743 -1.5250 -2.6369 37 1 3.9415 -1.2845 -2.0985 38 1 3.9142 0.3409 -1.3675 39 1 1.2752 0.8876 -2.4062 40 1 0.9235 -1.6665 -6.3369 41 1 -1.2829 3.0311 -6.5982 42 1 0.3139 3.1852 -7.4008 43 1 -2.0461 1.4207 -8.1502 44 1 -0.8304 2.1937 -9.2193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966751663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:44 Heat of formation + Delta-G solvation = 28.736838 kcal Electronic energy + Delta-G solvation = -27443.384775 eV Core-core repulsion = 23591.433445 eV Total energy + Delta-G solvation = -3851.951330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.38927 -41.14575 -39.69998 -38.89357 -36.12580 -34.76228 -34.28791 -32.83011 -31.44535 -30.32450 -29.82786 -28.96441 -26.13740 -25.53432 -24.06927 -23.17604 -22.64898 -22.44572 -21.39126 -20.65238 -18.89525 -18.74166 -18.09449 -17.47013 -17.29065 -16.79456 -16.57079 -16.25301 -15.96793 -15.59436 -15.31810 -15.23990 -15.06022 -14.86683 -14.47927 -14.29822 -14.08418 -13.98263 -13.56163 -13.27801 -13.13637 -13.04417 -12.74707 -12.57522 -12.35010 -12.25733 -12.17520 -12.12682 -11.89147 -11.63042 -11.60100 -11.21163 -11.13112 -10.54844 -10.36137 -10.09407 -9.70905 -8.69329 -7.88089 -5.33901 0.10705 0.78819 0.90970 1.41850 1.48142 1.53495 1.67178 2.16083 2.29489 2.50835 3.00606 3.28152 3.37077 3.71149 3.79477 3.84432 3.86635 4.00229 4.11290 4.18396 4.23391 4.43335 4.46902 4.48699 4.57991 4.62986 4.67328 4.73082 4.75083 4.93414 4.99160 5.12359 5.14461 5.18708 5.20232 5.27722 5.39947 5.45843 5.54430 5.62867 5.74511 5.78025 6.21260 6.37310 6.54406 7.08509 7.14617 7.85457 8.35101 9.16954 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.003640 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.711019 B = 7691.028407 C = 9115.591147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.263 4.263 8 H 0.071 0.929 9 C -0.051 4.051 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.294 1.294 13 H -0.292 1.292 14 H -0.260 1.260 15 C 0.178 3.822 16 C 0.139 3.861 17 H 0.058 0.942 18 N -0.688 5.688 19 C 0.595 3.405 20 O -0.562 6.562 21 C 0.045 3.955 22 C -0.244 4.244 23 C 0.243 3.757 24 N -0.407 5.407 25 N -0.226 5.226 26 C 0.086 3.914 27 C 0.040 3.960 28 O -0.290 6.290 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.247 0.753 37 H 0.045 0.955 38 H -0.002 1.002 39 H 0.413 0.587 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.995 12.683 -9.371 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.393 4.393 8 H 0.088 0.912 9 C -0.247 4.247 10 N -0.578 5.578 11 Si 0.790 3.210 12 H -0.221 1.221 13 H -0.219 1.219 14 H -0.184 1.184 15 C 0.051 3.949 16 C 0.033 3.967 17 H 0.076 0.924 18 N -0.339 5.339 19 C 0.378 3.622 20 O -0.438 6.438 21 C -0.120 4.120 22 C -0.274 4.274 23 C 0.074 3.926 24 N -0.205 5.205 25 N -0.057 5.057 26 C -0.032 4.032 27 C -0.035 4.035 28 O -0.196 6.196 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.016 0.984 39 H 0.250 0.750 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.780 12.968 -9.051 25.325 hybrid contribution 1.066 -1.186 -0.941 1.851 sum -18.715 11.782 -9.992 24.267 Atomic orbital electron populations 1.21771 0.92992 1.01833 1.02668 1.21279 0.96959 0.99372 0.92816 0.90390 1.21968 0.95655 1.00382 0.97361 1.21190 0.93606 0.96210 0.87964 1.44233 1.48149 1.39869 1.00936 1.19524 1.09571 1.03946 1.06296 0.91154 1.25804 0.98657 1.00309 0.99892 1.70181 1.38521 1.30843 1.18224 0.85341 0.77174 0.80151 0.78317 1.22136 1.21865 1.18428 1.20785 0.89536 0.95063 0.89545 1.21663 0.95048 0.96160 0.83845 0.92369 1.45742 1.64042 1.14915 1.09166 1.17117 0.77527 0.85410 0.82099 1.90825 1.51169 1.17337 1.84483 1.21664 1.03350 0.92087 0.94924 1.20110 1.16337 1.00908 0.90033 1.20580 0.98710 0.89821 0.83520 1.51110 1.50914 1.11281 1.07243 1.77519 1.19676 1.14460 0.94085 1.23876 1.02095 0.89870 0.87337 1.24971 0.96489 0.81161 1.00845 1.87161 1.66725 1.47857 1.17896 0.93492 0.90120 0.92430 0.88353 0.92799 0.96114 0.92350 0.94447 0.93661 0.98365 0.74999 0.82590 0.84112 0.85773 0.86803 0.81195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.02 71.98 0.65 -2.65 16 2 C -0.09 -2.68 2.27 -10.77 -0.02 -2.70 16 3 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.11 -3.67 5.36 30.67 0.16 -3.51 16 5 C 0.14 5.60 6.51 86.36 0.56 6.16 16 6 N -0.61 -32.24 2.99 -699.11 -2.09 -34.34 16 7 C -0.26 -15.39 9.59 84.04 0.81 -14.59 16 8 H 0.07 3.96 7.89 -2.91 -0.02 3.94 16 9 C -0.05 -3.08 4.91 84.86 0.42 -2.66 16 10 N -0.93 -59.54 11.19 21.65 0.24 -59.30 16 11 Si 0.96 48.68 29.59 68.60 2.03 50.71 16 12 H -0.29 -15.17 7.11 99.48 0.71 -14.47 16 13 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 14 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 15 C 0.18 9.34 4.88 86.36 0.42 9.76 16 16 C 0.14 5.72 2.06 45.07 0.09 5.81 16 17 H 0.06 2.74 7.58 -2.39 -0.02 2.72 16 18 N -0.69 -25.36 4.37 -445.15 -1.94 -27.31 16 19 C 0.59 24.48 7.79 86.75 0.68 25.16 16 20 O -0.56 -28.18 16.56 -3.92 -0.06 -28.25 16 21 C 0.05 1.58 7.09 42.31 0.30 1.88 16 22 C -0.24 -7.92 10.60 22.45 0.24 -7.68 16 23 C 0.24 6.21 8.32 83.60 0.70 6.90 16 24 N -0.41 -9.21 5.01 -453.34 -2.27 -11.48 16 25 N -0.23 -6.71 12.39 -48.51 -0.60 -7.31 16 26 C 0.09 0.72 8.10 86.76 0.70 1.42 16 27 C 0.04 0.21 8.08 72.54 0.59 0.80 16 28 O -0.29 -5.34 11.19 -94.92 -1.06 -6.40 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.33 7.35 -2.39 -0.02 1.31 16 32 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 2.35 7.94 -2.39 -0.02 2.33 16 36 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 37 H 0.04 2.84 6.04 -2.39 -0.01 2.83 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.41 12.74 8.00 -92.71 -0.74 12.00 16 40 H 0.16 5.13 8.06 -2.91 -0.02 5.11 16 41 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.17 -0.44 8.14 -2.38 -0.02 -0.46 16 Total: -1.00 -84.75 359.92 0.80 -83.95 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.28 Total: 15.63 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 6.29 Total: 24.10 kcal Atomic # 7 Polarization: -133.07 SS G_CDS: -6.67 Total: -139.74 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.13 Total: -34.65 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -84.75 0.80 -83.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966751663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.684 kcal (2) G-P(sol) polarization free energy of solvation -84.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds