Wall clock time and date at job start Tue Mar 31 2020 13:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47236 * 2 1 4 4 C 1.46503 * 120.00437 * 270.00604 * 3 2 1 5 5 C 1.50696 * 109.46676 * 269.99923 * 4 3 2 6 6 H 1.07995 * 120.00584 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99562 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99991 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99891 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47263 * 90.00137 * 9 7 5 11 11 H 1.48508 * 109.46882 * 210.00171 * 9 7 5 12 12 H 1.48503 * 109.47087 * 329.99858 * 9 7 5 13 13 C 1.34776 * 119.99747 * 90.00248 * 3 2 1 14 14 O 1.21574 * 120.00207 * 180.02562 * 13 3 2 15 15 N 1.34779 * 120.00016 * 0.02562 * 13 3 2 16 16 C 1.39556 * 120.00243 * 185.41284 * 15 13 3 17 17 C 1.39352 * 120.82449 * 33.46725 * 16 15 13 18 18 C 1.38277 * 119.27067 * 180.29874 * 17 16 15 19 19 N 1.31637 * 120.98327 * 359.67937 * 18 17 16 20 20 C 1.32802 * 121.81347 * 0.02562 * 19 18 17 21 21 C 1.48185 * 119.68942 * 180.02562 * 20 19 18 22 22 O 1.21510 * 119.99585 * 173.17575 * 21 20 19 23 23 N 1.34774 * 119.99929 * 353.18321 * 21 20 19 24 24 C 1.46500 * 119.99660 * 174.73968 * 23 21 20 25 25 C 1.46496 * 120.00076 * 354.73764 * 23 21 20 26 26 C 1.39075 * 120.61697 * 0.02562 * 20 19 18 27 27 H 1.09007 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46925 * 299.99487 * 1 2 3 29 29 H 1.09000 * 109.47507 * 59.99897 * 1 2 3 30 30 H 1.09005 * 109.46925 * 240.00513 * 2 1 3 31 31 H 1.08996 * 109.47553 * 120.00867 * 2 1 3 32 32 H 1.08996 * 109.46919 * 29.99483 * 4 3 2 33 33 H 1.08999 * 109.47025 * 150.00072 * 4 3 2 34 34 H 0.97005 * 119.99523 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00085 * 5.41809 * 15 13 3 36 36 H 1.07996 * 120.36628 * 0.02562 * 17 16 15 37 37 H 1.08000 * 119.51259 * 179.70282 * 18 17 16 38 38 H 1.08997 * 109.47463 * 359.97438 * 24 23 21 39 39 H 1.08999 * 109.47133 * 119.99967 * 24 23 21 40 40 H 1.09005 * 109.46945 * 239.99580 * 24 23 21 41 41 H 1.08999 * 109.47502 * 84.28031 * 25 23 21 42 42 H 1.09001 * 109.47110 * 204.27975 * 25 23 21 43 43 H 1.08998 * 109.47359 * 324.27333 * 25 23 21 44 44 H 1.08005 * 120.51540 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0959 7 6 4.1489 2.3898 -2.8779 8 7 3.3489 3.1260 -3.6179 9 14 5.9134 2.0969 -3.4170 10 1 5.9774 0.8757 -4.2593 11 1 6.3919 3.2643 -4.2004 12 1 6.7735 1.9181 -2.2197 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1628 1.1673 15 7 2.0189 1.3809 2.3344 16 6 2.1425 2.0722 3.5404 17 6 1.8110 3.4230 3.6263 18 6 1.9517 4.0780 4.8360 19 7 2.3868 3.4431 5.9039 20 6 2.7087 2.1551 5.8699 21 6 3.1932 1.4870 7.1006 22 8 3.3711 0.2850 7.1095 23 7 3.4365 2.2125 8.2100 24 6 3.8041 1.5403 9.4587 25 6 3.3333 3.6732 8.1673 26 6 2.5954 1.4276 4.6900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 3.6750 3.5165 -4.4438 35 1 1.7718 0.4429 2.3362 36 1 1.4524 3.9535 2.7567 37 1 1.7005 5.1261 4.9058 38 1 3.8296 0.4626 9.2974 39 1 4.7876 1.8832 9.7801 40 1 3.0683 1.7749 10.2280 41 1 2.2946 3.9686 8.3149 42 1 3.9492 4.1042 8.9566 43 1 3.6795 4.0337 7.1987 44 1 2.8581 0.3803 4.6641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080188194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:56 Heat of formation + Delta-G solvation = 2.269814 kcal Electronic energy + Delta-G solvation = -26757.279627 eV Core-core repulsion = 22904.180601 eV Total energy + Delta-G solvation = -3853.099026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02766 -39.97331 -38.76872 -35.93526 -35.63883 -34.93244 -32.83098 -31.56627 -30.75668 -30.24543 -28.19620 -27.09563 -26.60882 -24.10911 -23.54446 -23.16398 -22.53061 -20.38144 -19.44402 -18.25033 -17.31529 -16.98632 -16.48931 -16.08084 -16.00737 -15.96467 -15.38928 -15.10218 -14.66040 -14.41172 -14.03184 -13.91598 -13.80979 -13.65352 -13.18441 -13.13631 -12.71964 -12.65632 -12.56467 -12.26084 -12.14285 -11.96663 -11.81437 -11.28969 -11.03468 -10.95548 -10.75632 -10.61344 -10.40381 -10.19652 -9.76310 -9.66561 -9.34493 -9.17976 -8.82431 -8.52162 -8.48636 -7.80115 -6.10141 -4.14969 0.66922 1.16378 2.63523 2.71093 3.01027 3.27109 3.34198 3.39119 3.58268 3.92037 3.97649 4.19889 4.42064 4.59306 4.91510 5.02024 5.06665 5.10722 5.14476 5.16596 5.24318 5.34467 5.46786 5.52456 5.56164 5.59537 5.61554 5.67431 5.87190 5.92583 6.06105 6.10808 6.23669 6.36076 6.42367 6.64397 6.82576 7.08843 7.22669 7.37056 7.51685 7.65339 7.86760 7.99696 8.15434 8.39001 8.84197 9.04429 9.50557 10.97799 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.002864 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.793774 B = 9775.297283 C =10187.537621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.602 5.602 4 C 0.260 3.740 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.698 3.302 14 O -0.564 6.564 15 N -0.691 5.691 16 C 0.223 3.777 17 C -0.151 4.151 18 C 0.110 3.890 19 N -0.475 5.475 20 C 0.090 3.910 21 C 0.574 3.426 22 O -0.538 6.538 23 N -0.606 5.606 24 C 0.079 3.921 25 C 0.090 3.910 26 C -0.147 4.147 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.407 0.593 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 -2.525 20.466 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.400 3.600 14 O -0.440 6.440 15 N -0.341 5.341 16 C 0.117 3.883 17 C -0.174 4.174 18 C -0.048 4.048 19 N -0.190 5.190 20 C -0.048 4.048 21 C 0.362 3.638 22 O -0.415 6.415 23 N -0.339 5.339 24 C -0.063 4.063 25 C -0.052 4.052 26 C -0.172 4.172 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.245 0.755 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.119 -1.800 20.935 21.627 hybrid contribution 0.796 -1.018 -1.268 1.810 sum -4.324 -2.818 19.667 20.333 Atomic orbital electron populations 1.22244 0.96419 1.01668 1.02584 1.21420 0.93759 0.84120 1.02645 1.47672 1.66349 1.13453 1.06147 1.19280 0.96391 0.93489 0.76729 1.21435 0.96925 1.32124 1.06319 0.92474 1.24918 0.97900 0.94825 0.96342 1.69925 1.35732 1.33299 1.14341 0.86495 0.84607 0.77710 0.78609 1.20616 1.21035 1.19902 1.15913 0.79117 0.84971 0.79990 1.90918 1.51044 1.16578 1.85425 1.43016 1.73013 1.14502 1.03525 1.17685 0.93182 0.92299 0.85178 1.22475 1.00181 0.94370 1.00336 1.22699 0.94576 1.00205 0.87311 1.67993 1.12002 1.08036 1.30950 1.20598 1.00556 0.90546 0.93142 1.17961 0.77291 0.86008 0.82572 1.90758 1.52983 1.14080 1.83630 1.47554 1.67980 1.08460 1.09858 1.21731 0.99943 0.99782 0.84887 1.22126 1.01914 0.77637 1.03546 1.21736 1.01214 1.02440 0.91804 0.91927 0.93075 0.91694 0.89256 0.92406 0.94571 0.93625 0.92643 0.75548 0.82829 0.81757 0.89541 0.92086 0.92094 0.92068 0.92539 0.88626 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.10 1.56 5.94 -4.04 -0.02 1.53 16 3 N -0.60 -12.05 2.46 -180.81 -0.44 -12.49 16 4 C 0.26 6.50 5.16 -5.19 -0.03 6.47 16 5 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.70 13.99 8.04 -86.92 -0.70 13.29 16 14 O -0.56 -13.50 13.68 5.30 0.07 -13.43 16 15 N -0.69 -10.61 5.23 -14.08 -0.07 -10.69 16 16 C 0.22 3.31 6.31 -83.51 -0.53 2.79 16 17 C -0.15 -2.17 8.73 -39.15 -0.34 -2.51 16 18 C 0.11 1.31 11.17 -17.62 -0.20 1.11 16 19 N -0.48 -5.86 6.17 -9.88 -0.06 -5.92 16 20 C 0.09 1.22 6.56 -83.05 -0.54 0.68 16 21 C 0.57 7.93 7.65 -12.18 -0.09 7.83 16 22 O -0.54 -8.65 15.68 5.36 0.08 -8.56 16 23 N -0.61 -6.65 3.27 -190.52 -0.62 -7.27 16 24 C 0.08 0.66 10.66 59.85 0.64 1.30 16 25 C 0.09 0.79 9.15 59.84 0.55 1.34 16 26 C -0.15 -2.05 9.58 -38.85 -0.37 -2.42 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.70 6.29 -51.93 -0.33 0.37 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.41 5.03 6.52 -40.82 -0.27 4.76 16 36 H 0.15 2.44 6.53 -52.49 -0.34 2.10 16 37 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.09 0.83 6.91 -51.93 -0.36 0.47 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.52 7.98 -51.93 -0.41 0.10 16 42 H 0.06 0.37 8.03 -51.93 -0.42 -0.05 16 43 H 0.10 0.97 5.80 -51.93 -0.30 0.67 16 44 H 0.15 1.92 7.65 -52.48 -0.40 1.52 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -34.03 368.83 -7.59 -41.62 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.13 Total: 3.42 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: -1.68 Total: 16.39 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.47 Total: -61.60 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.16 Total: -21.99 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.03 -7.59 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080188194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.885 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds