Wall clock time and date at job start Tue Mar 31 2020 14:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00134 * 2 1 4 4 N 1.34784 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.46959 * 120.64950 * 4.26176 * 4 2 1 6 6 C 1.53198 * 108.88744 * 126.46186 * 5 4 2 7 7 C 1.53034 * 109.31406 * 54.55593 * 6 5 4 8 8 C 1.53045 * 109.53514 * 298.63620 * 7 6 5 9 9 C 1.46924 * 120.63326 * 184.07360 * 4 2 1 10 10 H 1.09002 * 109.58267 * 113.68153 * 9 4 2 11 11 C 1.50702 * 109.58639 * 353.40176 * 9 4 2 12 12 O 1.21295 * 119.99787 * 293.41787 * 11 9 4 13 13 N 1.34774 * 120.00225 * 113.42017 * 11 9 4 14 14 C 1.40155 * 120.00468 * 180.02562 * 13 11 9 15 15 C 1.40407 * 125.97059 * 359.97438 * 14 13 11 16 16 C 1.35234 * 107.86863 * 179.97438 * 15 14 13 17 17 N 1.34971 * 107.86030 * 359.97438 * 16 15 14 18 18 C 1.46499 * 125.97152 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.46771 * 125.00402 * 18 17 16 20 20 H 1.08000 * 119.99987 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99950 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99596 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47311 * 59.99943 * 23 21 19 25 25 H 1.48500 * 109.46545 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46865 * 299.99458 * 23 21 19 27 27 N 1.31217 * 125.97519 * 180.26173 * 14 13 11 28 28 H 1.09003 * 109.47327 * 239.99955 * 1 2 3 29 29 H 1.09001 * 109.47083 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47311 * 120.00272 * 1 2 3 31 31 H 1.08999 * 109.60015 * 6.60227 * 5 4 2 32 32 H 1.08997 * 109.58780 * 246.31195 * 5 4 2 33 33 H 1.09001 * 109.49615 * 294.60071 * 6 5 4 34 34 H 1.09000 * 109.50083 * 174.50767 * 6 5 4 35 35 H 1.08991 * 109.46372 * 178.61487 * 7 6 5 36 36 H 1.09005 * 109.44952 * 58.64666 * 7 6 5 37 37 H 1.08993 * 109.49712 * 301.40942 * 8 7 6 38 38 H 1.09007 * 109.52290 * 181.32980 * 8 7 6 39 39 H 0.97006 * 119.99428 * 359.97438 * 13 11 9 40 40 H 1.08007 * 126.06765 * 359.96274 * 15 14 13 41 41 H 1.08004 * 126.07008 * 180.02562 * 16 15 14 42 42 H 1.08995 * 109.47903 * 5.00245 * 18 17 16 43 43 H 1.09003 * 109.47145 * 244.99678 * 18 17 16 44 44 H 0.97003 * 119.99626 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4636 -2.4465 -0.0929 6 6 2.0464 -3.2582 -1.2541 7 6 3.5586 -3.3978 -1.0654 8 6 4.2055 -2.0108 -1.0729 9 6 3.6473 -1.1850 0.0903 10 1 3.9499 -1.6346 1.0361 11 6 4.1755 0.2240 0.0089 12 8 4.0557 0.8582 -1.0181 13 7 4.7811 0.7795 1.0771 14 6 5.2719 2.0901 1.0016 15 6 5.2013 2.9340 -0.1184 16 6 5.7839 4.1093 0.2103 17 7 6.2079 4.0181 1.4884 18 6 6.8952 5.0682 2.2441 19 6 6.1434 5.3420 3.5212 20 1 5.2434 4.7894 3.7471 21 6 6.6046 6.2980 4.4012 22 7 7.7008 6.9706 4.1263 23 14 5.6731 6.6369 5.9845 24 1 5.6150 5.3971 6.7998 25 1 6.3705 7.7006 6.7510 26 1 4.2937 7.0822 5.6616 27 7 5.8823 2.7412 1.9635 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5139 -0.8900 31 1 0.4049 -2.2598 -0.2727 32 1 1.5839 -3.0016 0.8374 33 1 1.8428 -2.7458 -2.1944 34 1 1.5892 -4.2475 -1.2721 35 1 3.9723 -3.9958 -1.8773 36 1 3.7618 -3.8880 -0.1132 37 1 3.9817 -1.5102 -2.0149 38 1 5.2852 -2.1118 -0.9621 39 1 4.8766 0.2724 1.8986 40 1 4.7603 2.6880 -1.0731 41 1 5.8901 4.9688 -0.4351 42 1 6.9380 5.9780 1.6454 43 1 7.9077 4.7416 2.4815 44 1 8.0254 7.6429 4.7456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121068061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:36 Heat of formation + Delta-G solvation = 21.604700 kcal Electronic energy + Delta-G solvation = -27339.216205 eV Core-core repulsion = 23486.955602 eV Total energy + Delta-G solvation = -3852.260603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15396 -40.16207 -38.32886 -37.54069 -34.47792 -33.33669 -33.24857 -32.08632 -30.68218 -29.67352 -29.11870 -26.76718 -25.75247 -24.32310 -22.86974 -21.58859 -21.36073 -20.25908 -19.43366 -18.97131 -17.44135 -16.64758 -16.50294 -16.39420 -16.13777 -15.52608 -15.16499 -14.76904 -14.60989 -14.32368 -14.20324 -14.01518 -13.65646 -13.56052 -13.47277 -12.95105 -12.65979 -12.47297 -12.34468 -12.18884 -12.06641 -11.86199 -11.63592 -11.47165 -11.24902 -11.09163 -10.97542 -10.79003 -10.29193 -10.17186 -9.81496 -9.56453 -9.38303 -9.26190 -8.92089 -8.55886 -7.92351 -7.25253 -6.17115 -4.21685 2.27979 2.49490 2.83648 3.01733 3.24664 3.30471 3.32822 3.38481 3.93920 3.98936 4.29016 4.33432 4.39049 4.48664 4.57351 4.64505 4.80238 4.84505 4.97544 5.02021 5.09040 5.14255 5.17659 5.31873 5.43563 5.44389 5.60539 5.65240 5.68462 5.74386 5.95892 5.99226 6.14127 6.50872 6.71466 6.83481 6.99189 7.10593 7.15259 7.64295 7.75456 7.81768 8.00100 8.03454 8.20467 8.60141 8.80025 8.91357 9.43360 10.91478 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.002897 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.562710 B = 9663.760244 C =10157.138021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.497 3.503 3 O -0.491 6.491 4 N -0.609 5.609 5 C 0.111 3.889 6 C -0.138 4.138 7 C -0.118 4.118 8 C -0.122 4.122 9 C 0.134 3.866 10 H 0.088 0.912 11 C 0.539 3.461 12 O -0.499 6.499 13 N -0.631 5.631 14 C 0.270 3.730 15 C -0.277 4.277 16 C 0.046 3.954 17 N -0.323 5.323 18 C 0.260 3.740 19 C -0.526 4.526 20 H 0.068 0.932 21 C 0.061 3.939 22 N -0.897 5.897 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.312 5.312 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.404 0.596 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 -23.581 -10.420 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.286 3.714 3 O -0.364 6.364 4 N -0.348 5.348 5 C -0.012 4.012 6 C -0.176 4.176 7 C -0.155 4.155 8 C -0.161 4.161 9 C 0.026 3.974 10 H 0.106 0.894 11 C 0.324 3.676 12 O -0.371 6.371 13 N -0.279 5.279 14 C 0.017 3.983 15 C -0.309 4.309 16 C -0.104 4.104 17 N -0.105 5.105 18 C 0.142 3.858 19 C -0.565 4.565 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.143 5.143 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.238 0.762 40 H 0.175 0.825 41 H 0.182 0.818 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.079 -22.320 -9.843 27.221 hybrid contribution -0.718 -0.014 0.599 0.936 sum -12.797 -22.334 -9.244 27.350 Atomic orbital electron populations 1.21908 0.91413 1.05654 1.03757 1.21027 0.90920 0.83260 0.76237 1.90948 1.68313 1.30464 1.46699 1.48071 1.04755 1.06712 1.75223 1.21777 0.96632 0.83778 0.98997 1.21953 0.96334 1.00373 0.98960 1.21510 0.95053 0.96372 1.02595 1.21839 1.00509 0.95266 0.98486 1.21084 0.81428 0.94292 1.00549 0.89439 1.19648 0.77176 0.87163 0.83586 1.90610 1.54448 1.61438 1.30630 1.42321 1.58128 1.11724 1.15694 1.19007 0.99162 0.86104 0.94028 1.21476 1.14220 0.93584 1.01590 1.22521 1.00227 0.99711 0.87949 1.48990 1.42850 1.09840 1.08796 1.19681 0.92488 0.81929 0.91664 1.21249 1.10989 1.20772 1.03458 0.91404 1.24942 0.95133 0.95402 0.98636 1.69915 1.21755 1.24482 1.37389 0.86390 0.79750 0.77964 0.82408 1.19975 1.21072 1.20056 1.77290 1.23046 0.93264 1.20723 0.89469 0.88847 0.89559 0.89224 0.91038 0.91137 0.90411 0.91018 0.91455 0.89902 0.90163 0.76177 0.82472 0.81773 0.92684 0.93883 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 8.71 36.00 0.31 -1.00 16 2 C 0.50 6.27 7.68 -10.98 -0.08 6.19 16 3 O -0.49 -9.10 12.66 -19.19 -0.24 -9.35 16 4 N -0.61 -5.94 2.98 -166.51 -0.50 -6.43 16 5 C 0.11 0.58 6.33 -3.69 -0.02 0.56 16 6 C -0.14 -0.65 6.08 -26.61 -0.16 -0.81 16 7 C -0.12 -0.65 5.88 -26.69 -0.16 -0.81 16 8 C -0.12 -1.07 5.29 -26.61 -0.14 -1.21 16 9 C 0.13 1.44 3.31 -68.75 -0.23 1.21 16 10 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 11 C 0.54 8.75 4.32 -10.99 -0.05 8.70 16 12 O -0.50 -9.84 11.70 -19.20 -0.22 -10.07 16 13 N -0.63 -11.14 5.45 -11.13 -0.06 -11.21 16 14 C 0.27 6.03 8.11 -154.39 -1.25 4.78 16 15 C -0.28 -6.20 9.60 -39.84 -0.38 -6.58 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 17 N -0.32 -8.09 3.66 -62.56 -0.23 -8.32 16 18 C 0.26 6.98 6.26 -5.19 -0.03 6.94 16 19 C -0.53 -15.33 9.24 -34.44 -0.32 -15.65 16 20 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 23 Si 0.91 22.09 29.54 -169.99 -5.02 17.06 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 N -0.31 -7.77 12.43 31.44 0.39 -7.38 16 28 H 0.09 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.09 0.84 8.12 -51.93 -0.42 0.41 16 30 H 0.09 0.47 7.52 -51.93 -0.39 0.08 16 31 H 0.09 0.31 5.96 -51.93 -0.31 0.00 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.40 5.93 8.68 -40.82 -0.35 5.58 16 40 H 0.16 3.51 5.92 -52.48 -0.31 3.20 16 41 H 0.16 3.01 8.06 -52.48 -0.42 2.59 16 42 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 43 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -37.92 360.04 -8.90 -46.83 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.37 Total: 4.08 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -2.81 Total: 4.78 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.34 Total: -58.77 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.47 Total: -19.41 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.92 -8.90 -46.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121068061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.432 kcal (2) G-P(sol) polarization free energy of solvation -37.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds