Wall clock time and date at job start Tue Mar 31 2020 14:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00671 * 2 1 4 4 N 1.34781 * 119.99659 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99817 * 174.99649 * 4 2 1 6 6 C 1.50704 * 109.47100 * 304.83399 * 5 4 2 7 7 O 1.21306 * 119.99831 * 144.84337 * 6 5 4 8 8 N 1.34777 * 119.99996 * 324.57659 * 6 5 4 9 9 C 1.40597 * 119.99726 * 174.97944 * 8 6 5 10 10 C 1.40640 * 126.08152 * 0.02562 * 9 8 6 11 11 N 1.30917 * 108.38707 * 180.02562 * 10 9 8 12 12 N 1.40072 * 108.40260 * 0.02562 * 11 10 9 13 13 C 1.37324 * 126.06465 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99663 * 179.97438 * 13 12 11 15 15 C 1.38987 * 120.00334 * 359.97135 * 13 12 11 16 16 N 1.31293 * 119.99923 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00107 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47122 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47057 * 119.99597 * 17 15 13 20 20 H 1.48498 * 109.47187 * 239.99794 * 17 15 13 21 21 C 1.35684 * 126.07869 * 179.71316 * 9 8 6 22 22 C 1.52990 * 109.47569 * 64.83865 * 5 4 2 23 23 C 1.53004 * 109.47168 * 59.99824 * 22 5 4 24 24 C 1.52996 * 109.47011 * 60.00222 * 23 22 5 25 25 C 1.53004 * 109.46999 * 300.00068 * 24 23 22 26 26 C 1.52990 * 109.47270 * 60.00269 * 25 24 23 27 27 H 1.09000 * 109.46914 * 270.00228 * 1 2 3 28 28 H 1.09006 * 109.46490 * 29.99932 * 1 2 3 29 29 H 1.08998 * 109.47546 * 149.99412 * 1 2 3 30 30 H 0.97002 * 119.99741 * 354.98979 * 4 2 1 31 31 H 0.96997 * 120.00198 * 354.97356 * 8 6 5 32 32 H 1.08004 * 125.80981 * 359.97438 * 10 9 8 33 33 H 0.96999 * 119.99902 * 180.02562 * 16 15 13 34 34 H 1.07995 * 126.24789 * 359.97438 * 21 9 8 35 35 H 1.09002 * 109.47439 * 180.02562 * 22 5 4 36 36 H 1.09000 * 109.47230 * 300.00095 * 22 5 4 37 37 H 1.08995 * 109.47211 * 300.00011 * 23 22 5 38 38 H 1.09000 * 109.47062 * 180.02562 * 23 22 5 39 39 H 1.09003 * 109.46974 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.46993 * 60.00115 * 24 23 22 41 41 H 1.08995 * 109.46911 * 300.00020 * 25 24 23 42 42 H 1.09008 * 109.46829 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47295 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.47294 * 59.99603 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6416 -1.1697 -0.1112 6 6 4.0531 -0.4100 -1.3460 7 8 5.0695 0.2521 -1.3401 8 7 3.2947 -0.4706 -2.4585 9 6 3.6199 0.3198 -3.5748 10 6 4.7021 1.2129 -3.6704 11 7 4.6786 1.7648 -4.8573 12 7 3.5845 1.2484 -5.5634 13 6 3.2208 1.5794 -6.8456 14 1 2.3547 1.1185 -7.2971 15 6 3.9671 2.5074 -7.5621 16 7 5.0197 3.0681 -7.0129 17 14 3.4719 2.9581 -9.3059 18 1 2.2578 2.1935 -9.6890 19 1 3.1831 4.4130 -9.3782 20 1 4.5804 2.6266 -10.2367 21 6 2.9490 0.3521 -4.7537 22 6 4.2479 -0.5015 1.1244 23 6 3.8301 -1.2728 2.3780 24 6 4.3317 -2.7149 2.2803 25 6 3.7255 -3.3831 1.0446 26 6 4.1433 -2.6119 -0.2089 27 1 -0.3633 0.0000 1.0277 28 1 -0.3632 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6985 -2.0057 0.0725 31 1 2.5246 -1.0595 -2.4890 32 1 5.4286 1.4106 -2.8960 33 1 5.5403 3.7161 -7.5129 34 1 2.0704 -0.2236 -5.0044 35 1 5.3348 -0.5029 1.0418 36 1 3.8905 0.5259 1.1940 37 1 2.7433 -1.2710 2.4604 38 1 4.2617 -0.7965 3.2583 39 1 4.0337 -3.2645 3.1732 40 1 5.4186 -2.7167 2.1979 41 1 2.6387 -3.3813 1.1270 42 1 4.0826 -4.4107 0.9753 43 1 3.7110 -3.0877 -1.0892 44 1 5.2302 -2.6137 -0.2913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139339712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:39 Heat of formation + Delta-G solvation = 2.394156 kcal Electronic energy + Delta-G solvation = -28000.787812 eV Core-core repulsion = 24147.694178 eV Total energy + Delta-G solvation = -3853.093635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.05618 -39.48109 -38.32727 -37.43300 -34.28584 -33.80859 -32.95570 -31.03725 -30.98127 -30.12164 -28.69645 -27.65012 -24.97670 -23.48326 -22.86869 -21.24163 -20.95103 -20.39072 -19.32230 -19.02306 -17.52594 -17.15389 -16.84688 -15.97489 -15.41004 -15.24929 -14.99365 -14.69700 -14.29544 -14.23492 -13.99451 -13.79960 -13.56277 -13.07206 -12.97093 -12.82927 -12.70465 -12.42285 -12.40553 -12.16111 -12.05309 -11.63113 -11.35789 -11.29999 -11.23151 -10.90921 -10.77314 -10.66079 -10.48446 -10.46505 -10.04210 -9.71528 -9.55051 -9.09028 -8.76330 -8.66605 -7.96749 -6.59746 -6.49277 -4.15472 2.63617 2.82030 3.01019 3.08208 3.14261 3.23006 3.64444 3.76727 3.92355 4.43901 4.52931 4.58828 4.63263 4.75535 4.87755 4.98738 5.08252 5.09192 5.09865 5.22386 5.28723 5.29978 5.33942 5.41546 5.56431 5.70876 5.78749 5.82481 5.91141 5.96316 6.05678 6.15077 6.30038 6.40676 6.43250 6.55140 6.98253 7.05700 7.22157 7.33522 7.42713 7.93195 8.23222 8.28261 8.38239 8.71611 8.96783 9.46171 9.75841 10.46924 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.003209 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.366807 B = 8724.268537 C = 9125.940938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.505 3.495 3 O -0.517 6.517 4 N -0.728 5.728 5 C 0.171 3.829 6 C 0.509 3.491 7 O -0.528 6.528 8 N -0.619 5.619 9 C -0.053 4.053 10 C -0.031 4.031 11 N -0.259 5.259 12 N -0.144 5.144 13 C -0.324 4.324 14 H 0.115 0.885 15 C 0.046 3.954 16 N -0.770 5.770 17 Si 0.934 3.066 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.086 4.086 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.120 4.120 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.400 0.600 31 H 0.391 0.609 32 H 0.174 0.826 33 H 0.273 0.727 34 H 0.143 0.857 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -14.324 15.442 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.391 6.391 4 N -0.384 5.384 5 C 0.081 3.919 6 C 0.293 3.707 7 O -0.403 6.403 8 N -0.261 5.261 9 C -0.158 4.158 10 C -0.207 4.207 11 N -0.091 5.091 12 N 0.088 4.912 13 C -0.456 4.456 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.397 5.397 17 Si 0.758 3.242 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.237 4.237 22 C -0.154 4.154 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.158 4.158 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.235 0.765 31 H 0.224 0.776 32 H 0.191 0.809 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.742 -12.034 14.580 20.071 hybrid contribution -1.429 -1.161 -0.248 1.858 sum -8.170 -13.195 14.331 21.125 Atomic orbital electron populations 1.21885 0.91698 1.05103 1.04432 1.20859 0.90576 0.83626 0.75780 1.90817 1.70209 1.31121 1.46909 1.46269 1.06396 1.09087 1.76694 1.20503 0.80538 0.96353 0.94461 1.20228 0.84259 0.82505 0.83696 1.90590 1.25277 1.41347 1.83093 1.42393 1.29399 1.41892 1.12386 1.17269 1.03629 1.06182 0.88762 1.24054 1.00162 0.99334 0.97155 1.78244 1.05426 1.21651 1.03753 1.44524 1.15382 1.22012 1.09294 1.19883 1.13737 1.25507 0.86445 0.86712 1.25632 0.95152 0.95771 1.00570 1.70234 1.12457 1.20897 1.36116 0.85777 0.79033 0.78884 0.80497 1.18754 1.19958 1.19959 1.21204 1.04148 1.05617 0.92705 1.21738 1.01535 1.00673 0.91497 1.21490 1.00876 0.95105 0.97677 1.21580 1.00905 0.95966 0.97457 1.21515 1.00570 0.98985 0.94204 1.21801 1.03026 0.92064 0.98923 0.89136 0.88707 0.90228 0.76466 0.77635 0.80937 0.91595 0.83992 0.90121 0.89594 0.92159 0.91850 0.92042 0.91662 0.91952 0.91297 0.90748 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.31 36.00 0.37 -1.03 16 2 C 0.50 6.37 7.05 -10.98 -0.08 6.29 16 3 O -0.52 -9.61 14.38 5.55 0.08 -9.53 16 4 N -0.73 -7.24 3.45 -48.68 -0.17 -7.41 16 5 C 0.17 2.19 0.58 -132.97 -0.08 2.11 16 6 C 0.51 9.56 5.15 -10.98 -0.06 9.50 16 7 O -0.53 -12.23 13.27 5.53 0.07 -12.15 16 8 N -0.62 -11.81 5.02 -10.00 -0.05 -11.86 16 9 C -0.05 -1.30 6.90 -83.84 -0.58 -1.87 16 10 C -0.03 -0.88 10.85 -17.04 -0.18 -1.07 16 11 N -0.26 -7.90 10.40 30.80 0.32 -7.58 16 12 N -0.14 -4.11 3.74 -11.41 -0.04 -4.15 16 13 C -0.32 -8.84 10.25 -14.81 -0.15 -8.99 16 14 H 0.12 2.80 7.83 -52.48 -0.41 2.39 16 15 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 16 N -0.77 -22.22 11.81 55.49 0.66 -21.56 16 17 Si 0.93 19.45 29.55 -169.99 -5.02 14.42 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.09 -2.12 11.49 -16.39 -0.19 -2.31 16 22 C -0.12 -1.55 4.12 -26.73 -0.11 -1.66 16 23 C -0.11 -1.08 5.77 -26.73 -0.15 -1.24 16 24 C -0.12 -0.93 5.92 -26.73 -0.16 -1.08 16 25 C -0.12 -0.79 5.75 -26.73 -0.15 -0.94 16 26 C -0.12 -1.16 4.78 -26.73 -0.13 -1.29 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.40 2.44 7.17 -40.82 -0.29 2.15 16 31 H 0.39 5.95 8.28 -40.82 -0.34 5.61 16 32 H 0.17 4.88 5.94 -52.48 -0.31 4.57 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.14 2.92 8.06 -52.49 -0.42 2.50 16 35 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 36 H 0.09 1.44 6.36 -51.93 -0.33 1.11 16 37 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.34 6.77 -51.93 -0.35 -0.01 16 42 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -37.83 354.83 -6.75 -44.59 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.20 Total: 12.35 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.74 Total: -2.46 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.71 Total: -52.56 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.15 Total: -21.68 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.83 -6.75 -44.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139339712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.982 kcal (2) G-P(sol) polarization free energy of solvation -37.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds