Wall clock time and date at job start Tue Mar 31 2020 12:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 5 5 C 1.34784 * 119.99893 * 85.00288 * 4 2 1 6 6 O 1.21283 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99774 * 179.72962 * 5 4 2 8 8 C 1.54265 * 110.03056 * 297.90426 * 7 5 4 9 9 C 1.54969 * 104.15911 * 217.14212 * 8 7 5 10 10 C 1.54885 * 102.78136 * 37.88779 * 9 8 7 11 11 C 1.53876 * 110.03039 * 180.69212 * 7 5 4 12 12 C 1.50700 * 109.47096 * 120.00086 * 2 1 3 13 13 O 1.21306 * 120.00047 * 119.99569 * 12 2 1 14 14 N 1.34776 * 120.00028 * 299.99917 * 12 2 1 15 15 C 1.40592 * 119.99880 * 179.97438 * 14 12 2 16 16 C 1.40647 * 126.08701 * 0.02562 * 15 14 12 17 17 N 1.30910 * 108.38879 * 179.97438 * 16 15 14 18 18 N 1.40067 * 108.40834 * 0.02562 * 17 16 15 19 19 C 1.37322 * 126.06974 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99826 * 179.97438 * 19 18 17 21 21 C 1.38991 * 119.99875 * 359.97396 * 19 18 17 22 22 N 1.31295 * 119.99827 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99625 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47115 * 60.00519 * 23 21 19 25 25 H 1.48507 * 109.46913 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47523 * 299.99915 * 23 21 19 27 27 C 1.35687 * 126.07894 * 179.71498 * 15 14 12 28 28 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 29 29 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 30 30 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00261 * 265.00500 * 4 2 1 32 32 H 1.08995 * 110.02037 * 59.29569 * 7 5 4 33 33 H 1.09001 * 110.48904 * 335.78296 * 8 7 5 34 34 H 1.08997 * 110.48806 * 98.43049 * 8 7 5 35 35 H 1.09002 * 110.71760 * 279.56973 * 9 8 7 36 36 H 1.09001 * 110.92370 * 156.29651 * 9 8 7 37 37 H 1.08996 * 110.49293 * 203.40822 * 10 9 8 38 38 H 1.08999 * 110.59838 * 80.81245 * 10 9 8 39 39 H 1.08998 * 110.03144 * 238.56889 * 11 7 5 40 40 H 1.09004 * 110.03328 * 359.97438 * 11 7 5 41 41 H 0.97004 * 119.99881 * 359.97438 * 14 12 2 42 42 H 1.08000 * 125.80391 * 359.96332 * 16 15 14 43 43 H 0.96995 * 119.99488 * 180.02562 * 22 21 19 44 44 H 1.07994 * 126.24603 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3572 6 8 1.8591 1.1586 -2.4115 7 6 2.6552 -0.7272 -3.5860 8 6 4.0916 -1.2364 -3.3463 9 6 4.7983 -1.0334 -4.7104 10 6 4.2055 0.3086 -5.2071 11 6 2.7274 0.2544 -4.7688 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6968 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1749 -0.9131 3.6025 16 6 2.9868 -2.0614 3.6226 17 7 3.2149 -2.3841 4.8707 18 7 2.5600 -1.4589 5.6935 19 6 2.5590 -1.4569 7.0667 20 1 2.0185 -0.6925 7.6051 21 6 3.2536 -2.4386 7.7636 22 7 3.9111 -3.3675 7.1089 23 14 3.2527 -2.4353 9.6315 24 1 1.8583 -2.5630 10.1261 25 1 4.0613 -3.5774 10.1289 26 1 3.8384 -1.1630 10.1247 27 6 1.9287 -0.5556 4.8880 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2490 -1.6319 -1.1526 32 1 1.9995 -1.5621 -3.8331 33 1 4.5813 -0.6463 -2.5717 34 1 4.0818 -2.2918 -3.0742 35 1 4.5508 -1.8428 -5.3972 36 1 5.8778 -0.9547 -4.5816 37 1 4.2793 0.3799 -6.2922 38 1 4.7127 1.1499 -4.7350 39 1 2.1073 -0.1045 -5.5902 40 1 2.3945 1.2435 -4.4541 41 1 1.1493 0.5389 2.5436 42 1 3.3586 -2.5876 2.7558 43 1 4.3955 -4.0527 7.5953 44 1 1.3392 0.2883 5.2144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139374313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:04 Heat of formation + Delta-G solvation = -4.312133 kcal Electronic energy + Delta-G solvation = -26363.872621 eV Core-core repulsion = 22510.488180 eV Total energy + Delta-G solvation = -3853.384441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.59042 -39.84924 -38.75912 -37.23178 -34.99730 -34.33133 -33.24245 -31.28435 -30.23713 -29.08587 -28.78621 -27.69959 -25.23521 -24.27414 -22.14387 -21.04030 -20.89585 -20.20046 -19.80271 -19.39047 -17.94114 -17.39200 -16.67648 -15.98107 -15.89630 -15.47059 -15.23058 -14.99768 -14.79283 -14.37998 -13.99391 -13.78020 -13.58291 -13.50325 -13.17616 -12.94723 -12.56910 -12.37922 -11.97329 -11.72764 -11.66496 -11.54596 -11.44310 -11.34450 -11.31481 -11.26240 -10.99862 -10.98543 -10.74161 -10.58213 -10.23296 -9.85917 -9.43392 -9.20422 -9.10288 -8.84363 -8.10064 -6.75664 -6.58680 -4.26263 2.51254 2.71776 2.90467 3.00144 3.03522 3.07111 3.60478 3.63357 3.85316 4.23558 4.35267 4.36862 4.50953 4.62961 4.89969 4.98922 5.01657 5.03600 5.11670 5.13964 5.21244 5.26429 5.38123 5.42889 5.49387 5.63646 5.67777 5.70426 5.86074 5.92833 6.01175 6.07190 6.11471 6.20344 6.31461 6.41016 6.84495 6.90827 7.04183 7.19478 7.43647 7.81858 8.05149 8.15224 8.22926 8.55505 8.75252 9.33969 9.62954 10.37241 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029826 B = 0.002280 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.542690 B =12279.420265 C =12946.967025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.110 0.890 4 N -0.708 5.708 5 C 0.523 3.477 6 O -0.544 6.544 7 C -0.112 4.112 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.119 4.119 12 C 0.495 3.505 13 O -0.534 6.534 14 N -0.616 5.616 15 C -0.062 4.062 16 C -0.032 4.032 17 N -0.261 5.261 18 N -0.141 5.141 19 C -0.323 4.323 20 H 0.116 0.884 21 C 0.046 3.954 22 N -0.770 5.770 23 Si 0.935 3.065 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.267 1.267 27 C -0.083 4.083 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.411 0.589 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.399 0.601 42 H 0.176 0.824 43 H 0.276 0.724 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.827 5.455 -18.211 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 H 0.128 0.872 4 N -0.361 5.361 5 C 0.309 3.691 6 O -0.421 6.421 7 C -0.133 4.133 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.156 4.156 12 C 0.280 3.720 13 O -0.412 6.412 14 N -0.258 5.258 15 C -0.168 4.168 16 C -0.208 4.208 17 N -0.092 5.092 18 N 0.091 4.909 19 C -0.455 4.455 20 H 0.134 0.866 21 C -0.171 4.171 22 N -0.396 5.396 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.234 4.234 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.248 0.752 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.232 0.768 42 H 0.192 0.808 43 H 0.086 0.914 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.807 4.551 -17.480 18.279 hybrid contribution -0.691 0.578 0.469 1.016 sum -3.498 5.128 -17.010 18.108 Atomic orbital electron populations 1.22128 0.93080 1.03184 1.03298 1.20698 0.95427 0.97941 0.84009 0.87192 1.45763 1.67005 1.14971 1.08373 1.20606 0.76758 0.87193 0.84515 1.90653 1.50543 1.16067 1.84872 1.21940 0.98610 0.99356 0.93423 1.22391 0.92997 1.01671 0.98396 1.22511 0.99852 0.97568 0.96199 1.22365 0.95572 0.97752 1.00533 1.22166 0.97021 1.00746 0.95700 1.20259 0.81971 0.85583 0.84206 1.90589 1.38281 1.26419 1.85885 1.42403 1.50063 1.29477 1.03830 1.17254 1.13147 1.01869 0.84514 1.24093 1.02655 0.97573 0.96434 1.78262 1.19236 1.13140 0.98538 1.44548 1.26830 1.14393 1.05091 1.19835 1.34116 1.14766 0.76827 0.86624 1.25648 0.95174 0.94925 1.01376 1.70205 1.22658 1.10215 1.36539 0.85890 0.79077 0.78672 0.80487 1.19135 1.20121 1.19138 1.21268 1.11130 1.01674 0.89302 0.90926 0.91097 0.91669 0.75175 0.88336 0.90890 0.90543 0.91287 0.91276 0.91601 0.91517 0.91518 0.89192 0.76793 0.80769 0.91378 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.38 37.15 0.35 -1.32 16 2 C 0.13 1.63 2.98 -69.09 -0.21 1.42 16 3 H 0.11 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.71 -8.53 4.89 -54.93 -0.27 -8.80 16 5 C 0.52 6.30 6.97 -10.98 -0.08 6.23 16 6 O -0.54 -8.10 14.87 5.56 0.08 -8.02 16 7 C -0.11 -1.02 3.29 -90.65 -0.30 -1.32 16 8 C -0.12 -1.02 6.30 -25.03 -0.16 -1.17 16 9 C -0.12 -0.92 6.91 -24.70 -0.17 -1.09 16 10 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 11 C -0.12 -1.05 6.40 -25.61 -0.16 -1.22 16 12 C 0.49 8.15 7.19 -10.99 -0.08 8.07 16 13 O -0.53 -10.55 12.99 5.53 0.07 -10.48 16 14 N -0.62 -10.45 5.36 -10.00 -0.05 -10.50 16 15 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 16 C -0.03 -0.83 10.85 -17.04 -0.18 -1.01 16 17 N -0.26 -7.49 10.40 30.80 0.32 -7.17 16 18 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 19 C -0.32 -8.46 10.25 -14.81 -0.15 -8.61 16 20 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.34 11.81 55.50 0.66 -20.68 16 23 Si 0.94 18.73 29.55 -169.99 -5.02 13.71 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 28 H 0.07 0.66 7.57 -51.93 -0.39 0.26 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.41 4.80 7.78 -40.82 -0.32 4.48 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.99 6.39 -51.93 -0.33 0.65 16 41 H 0.40 5.21 8.24 -40.82 -0.34 4.88 16 42 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 43 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -33.49 364.97 -7.20 -40.69 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.26 Total: 13.80 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.18 Total: -4.18 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.61 Total: -51.02 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.15 Total: -18.50 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.49 -7.20 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139374313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.378 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds