Wall clock time and date at job start Tue Mar 31 2020 12:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47055 * 2 1 4 4 N 1.46494 * 109.47338 * 119.99412 * 2 1 3 5 5 C 1.34775 * 120.00339 * 275.00328 * 4 2 1 6 6 O 1.21283 * 120.00045 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00136 * 180.02562 * 5 4 2 8 8 C 1.55239 * 110.57981 * 294.87145 * 7 5 4 9 9 C 1.54891 * 102.58877 * 203.34279 * 8 7 5 10 10 C 1.54265 * 104.31543 * 37.92868 * 9 8 7 11 11 C 1.53878 * 106.59883 * 336.32731 * 10 9 8 12 12 C 1.50700 * 109.47176 * 239.99731 * 2 1 3 13 13 O 1.21304 * 119.99663 * 239.99863 * 12 2 1 14 14 N 1.34777 * 119.99733 * 60.00082 * 12 2 1 15 15 C 1.40591 * 119.99535 * 180.02562 * 14 12 2 16 16 C 1.40657 * 126.08630 * 0.02562 * 15 14 12 17 17 N 1.30909 * 108.38849 * 180.02562 * 16 15 14 18 18 N 1.40069 * 108.40418 * 359.97438 * 17 16 15 19 19 C 1.37331 * 126.06494 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00149 * 174.11080 * 19 18 17 21 21 C 1.38993 * 119.99880 * 354.11484 * 19 18 17 22 22 N 1.31295 * 119.99922 * 5.91901 * 21 19 18 23 23 Si 1.86796 * 119.99586 * 185.91444 * 21 19 18 24 24 H 1.48500 * 109.47257 * 94.98205 * 23 21 19 25 25 H 1.48507 * 109.47256 * 214.97960 * 23 21 19 26 26 H 1.48495 * 109.47467 * 334.98001 * 23 21 19 27 27 C 1.35678 * 126.08397 * 179.71309 * 15 14 12 28 28 H 1.08997 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47094 * 300.00401 * 1 2 3 30 30 H 1.09003 * 109.47166 * 60.00397 * 1 2 3 31 31 H 0.96999 * 120.00029 * 95.00142 * 4 2 1 32 32 H 1.08997 * 110.43602 * 57.46006 * 7 5 4 33 33 H 1.09000 * 110.89957 * 85.04686 * 8 7 5 34 34 H 1.09007 * 110.76491 * 321.57050 * 8 7 5 35 35 H 1.09005 * 110.48234 * 279.18503 * 9 8 7 36 36 H 1.08992 * 110.48848 * 156.67735 * 9 8 7 37 37 H 1.08998 * 110.03251 * 95.60472 * 10 9 8 38 38 H 1.09002 * 110.03460 * 216.99287 * 10 9 8 39 39 H 1.09005 * 110.03335 * 119.27794 * 11 10 9 40 40 H 1.08995 * 110.03365 * 240.66602 * 11 10 9 41 41 H 0.96992 * 120.00342 * 359.97438 * 14 12 2 42 42 H 1.07993 * 125.80141 * 0.02562 * 16 15 14 43 43 H 0.97004 * 119.99475 * 179.97438 * 22 21 19 44 44 H 1.08005 * 126.24183 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8590 1.1588 2.4114 7 6 2.6500 -0.7283 3.5875 8 6 1.6443 -1.8228 4.0352 9 6 1.9767 -1.9921 5.5385 10 6 2.2830 -0.5606 6.0250 11 6 2.7111 0.2430 4.7845 12 6 2.0323 -0.7105 -1.2304 13 8 2.7297 -1.6967 -1.1190 14 7 1.7067 -0.2500 -2.4545 15 6 2.1749 -0.9132 -3.6024 16 6 2.9861 -2.0621 -3.6225 17 7 3.2145 -2.3846 -4.8705 18 7 2.5606 -1.4587 -5.6933 19 6 2.5602 -1.4563 -7.0666 20 1 1.9446 -0.7512 -7.6052 21 6 3.3520 -2.3616 -7.7633 22 7 4.0100 -3.2939 -7.1138 23 14 3.4797 -2.2520 -9.6237 24 1 4.6808 -1.4600 -9.9916 25 1 3.5944 -3.6186 -10.1934 26 1 2.2656 -1.5903 -10.1651 27 6 1.9199 -0.5622 -4.8879 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6316 1.1527 32 1 3.6309 -1.1653 3.4004 33 1 1.8162 -2.7534 3.4943 34 1 0.6175 -1.4818 3.9026 35 1 2.8488 -2.6334 5.6665 36 1 1.1209 -2.4022 6.0746 37 1 1.3907 -0.1175 6.4671 38 1 3.0915 -0.5795 6.7558 39 1 2.0265 1.0761 4.6246 40 1 3.7276 0.6149 4.9130 41 1 1.1488 0.5384 -2.5436 42 1 3.3572 -2.5886 -2.7557 43 1 4.5623 -3.9259 -7.6002 44 1 1.3213 0.2754 -5.2144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139374432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:08 Heat of formation + Delta-G solvation = -5.251749 kcal Electronic energy + Delta-G solvation = -26256.259771 eV Core-core repulsion = 22402.834585 eV Total energy + Delta-G solvation = -3853.425186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.55927 -39.83396 -38.75613 -37.30408 -34.99117 -34.33337 -33.24283 -31.27537 -30.23834 -29.10321 -28.87304 -27.70603 -25.23229 -24.27136 -22.26358 -21.06089 -20.73638 -20.18672 -19.87482 -19.40961 -17.97420 -17.39088 -16.75450 -15.95751 -15.81627 -15.46409 -15.29827 -14.97014 -14.75385 -14.60869 -13.93401 -13.65669 -13.58998 -13.44588 -13.22101 -12.94657 -12.74569 -12.38557 -12.08389 -11.74883 -11.67373 -11.55249 -11.44383 -11.42087 -11.38561 -11.29633 -11.05644 -10.95871 -10.68417 -10.54979 -10.23121 -9.87379 -9.43227 -9.21583 -9.09875 -8.84451 -8.10040 -6.75792 -6.59549 -4.26520 2.51078 2.71569 2.90087 2.99099 3.03763 3.08658 3.60365 3.63302 3.85205 4.20796 4.28712 4.36602 4.47300 4.62495 4.87274 4.97707 5.02033 5.02413 5.09457 5.14439 5.17062 5.22313 5.29138 5.37328 5.49427 5.55818 5.65175 5.67896 5.80233 5.88409 6.00742 6.02191 6.09556 6.20063 6.30306 6.41175 6.84597 6.91300 7.04027 7.19294 7.43801 7.82109 8.05141 8.15351 8.22818 8.55397 8.75078 9.34056 9.62723 10.36726 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037313 B = 0.002154 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.234796 B =12994.553185 C =13406.133378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.110 0.890 4 N -0.708 5.708 5 C 0.524 3.476 6 O -0.545 6.545 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.495 3.505 13 O -0.535 6.535 14 N -0.616 5.616 15 C -0.063 4.063 16 C -0.032 4.032 17 N -0.261 5.261 18 N -0.142 5.142 19 C -0.324 4.324 20 H 0.117 0.883 21 C 0.046 3.954 22 N -0.769 5.769 23 Si 0.935 3.065 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.264 1.264 27 C -0.081 4.081 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.411 0.589 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.176 0.824 43 H 0.275 0.725 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 4.794 18.844 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 H 0.128 0.872 4 N -0.361 5.361 5 C 0.311 3.689 6 O -0.422 6.422 7 C -0.135 4.135 8 C -0.152 4.152 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.150 4.150 12 C 0.280 3.720 13 O -0.412 6.412 14 N -0.258 5.258 15 C -0.168 4.168 16 C -0.207 4.207 17 N -0.092 5.092 18 N 0.091 4.909 19 C -0.456 4.456 20 H 0.134 0.866 21 C -0.171 4.171 22 N -0.396 5.396 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.232 4.232 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.248 0.752 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.192 0.808 43 H 0.086 0.914 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.719 3.906 18.117 19.125 hybrid contribution -0.509 0.667 -0.466 0.960 sum -5.228 4.573 17.651 18.968 Atomic orbital electron populations 1.22125 0.93078 1.03178 1.03283 1.20696 0.95431 0.97950 0.83998 0.87178 1.45767 1.67028 1.14960 1.08350 1.20547 0.77020 0.87074 0.84296 1.90670 1.50501 1.16042 1.84977 1.22232 1.00943 0.97371 0.92993 1.22558 0.98706 0.97591 0.96356 1.22352 1.01531 0.97015 0.95238 1.22151 1.01238 0.95276 0.97574 1.22074 1.02645 0.98197 0.92085 1.20260 0.81967 0.85563 0.84212 1.90589 1.38290 1.26443 1.85889 1.42399 1.50049 1.29496 1.03824 1.17260 1.12905 1.02112 0.84527 1.24093 1.02652 0.97552 0.96430 1.78255 1.19874 1.12532 0.98560 1.44556 1.26907 1.14363 1.05105 1.19889 1.28270 1.20632 0.76799 0.86562 1.25654 0.95335 0.94746 1.01372 1.70223 1.21409 1.11390 1.36532 0.85806 0.79401 0.78409 0.80508 1.19625 1.20090 1.18761 1.21269 1.10847 1.01837 0.89292 0.91666 0.91115 0.90934 0.75187 0.87958 0.90569 0.90916 0.91301 0.91405 0.91734 0.91741 0.89760 0.91488 0.76783 0.80772 0.91444 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.38 37.16 0.35 -1.31 16 2 C 0.13 1.62 2.98 -69.09 -0.21 1.42 16 3 H 0.11 1.41 7.58 -51.93 -0.39 1.01 16 4 N -0.71 -8.51 4.94 -54.93 -0.27 -8.79 16 5 C 0.52 6.31 7.10 -10.98 -0.08 6.24 16 6 O -0.54 -8.14 15.09 5.55 0.08 -8.05 16 7 C -0.11 -1.04 3.25 -89.92 -0.29 -1.33 16 8 C -0.11 -0.86 6.34 -24.55 -0.16 -1.02 16 9 C -0.12 -0.80 6.82 -25.07 -0.17 -0.98 16 10 C -0.12 -0.87 6.80 -25.61 -0.17 -1.04 16 11 C -0.11 -0.99 6.18 -25.61 -0.16 -1.15 16 12 C 0.50 8.16 7.19 -10.99 -0.08 8.08 16 13 O -0.53 -10.59 12.99 5.54 0.07 -10.52 16 14 N -0.62 -10.45 5.36 -10.00 -0.05 -10.50 16 15 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 16 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 17 N -0.26 -7.51 10.42 30.80 0.32 -7.19 16 18 N -0.14 -3.85 3.74 -11.41 -0.04 -3.89 16 19 C -0.32 -8.48 10.24 -14.81 -0.15 -8.63 16 20 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.33 11.84 55.50 0.66 -20.67 16 23 Si 0.93 18.77 29.56 -169.99 -5.02 13.74 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 27 C -0.08 -1.88 11.49 -16.40 -0.19 -2.07 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 31 H 0.41 4.78 7.79 -40.82 -0.32 4.46 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.89 6.85 -51.93 -0.36 0.54 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 5.21 8.24 -40.82 -0.34 4.87 16 42 H 0.18 4.43 5.92 -52.49 -0.31 4.11 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.15 2.79 8.06 -52.48 -0.42 2.36 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -33.64 365.77 -7.21 -40.85 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.30 Total: 13.19 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.17 Total: -3.69 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.61 Total: -51.03 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.16 Total: -18.57 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.64 -7.21 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139374432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.597 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds