Wall clock time and date at job start Tue Mar 31 2020 14:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21283 * 120.00100 * 2 1 4 4 N 1.34776 * 119.99936 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00133 * 184.65916 * 4 2 1 6 6 H 1.08998 * 109.46958 * 31.93919 * 5 4 2 7 7 C 1.50702 * 109.47181 * 271.94170 * 5 4 2 8 8 O 1.21308 * 119.99741 * 340.00118 * 7 5 4 9 9 N 1.34772 * 119.99978 * 159.99631 * 7 5 4 10 10 C 1.40597 * 119.99778 * 180.02562 * 9 7 5 11 11 C 1.40643 * 126.08398 * 0.02706 * 10 9 7 12 12 N 1.30905 * 108.38818 * 179.97438 * 11 10 9 13 13 N 1.40068 * 108.40844 * 0.02562 * 12 11 10 14 14 C 1.37326 * 126.06999 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99547 * 174.77477 * 14 13 12 16 16 C 1.38984 * 120.00120 * 354.77916 * 14 13 12 17 17 N 1.31295 * 119.99934 * 5.20354 * 16 14 13 18 18 Si 1.86802 * 120.00083 * 185.21304 * 16 14 13 19 19 H 1.48495 * 109.47257 * 94.98927 * 18 16 14 20 20 H 1.48501 * 109.46817 * 214.99371 * 18 16 14 21 21 H 1.48500 * 109.46833 * 334.98881 * 18 16 14 22 22 C 1.35686 * 126.07985 * 180.02562 * 10 9 7 23 23 C 1.52995 * 109.47263 * 151.94052 * 5 4 2 24 24 C 1.54263 * 110.03324 * 57.68298 * 23 5 4 25 25 C 1.54885 * 104.19978 * 217.10404 * 24 23 5 26 26 C 1.54891 * 102.74804 * 37.94406 * 25 24 23 27 27 C 1.53873 * 110.03339 * 300.51567 * 23 5 4 28 28 H 1.08999 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47140 * 300.00054 * 1 2 3 30 30 H 1.09000 * 109.46945 * 60.00640 * 1 2 3 31 31 H 0.97003 * 120.00000 * 4.65946 * 4 2 1 32 32 H 0.97004 * 120.00033 * 0.02562 * 9 7 5 33 33 H 1.07998 * 125.80846 * 359.71108 * 11 10 9 34 34 H 0.96994 * 119.99956 * 179.97438 * 17 16 14 35 35 H 1.07995 * 126.24654 * 359.97438 * 22 10 9 36 36 H 1.09002 * 110.01800 * 179.12379 * 23 5 4 37 37 H 1.09000 * 110.48868 * 335.78643 * 24 23 5 38 38 H 1.09005 * 110.48523 * 98.42540 * 24 23 5 39 39 H 1.08999 * 110.75916 * 279.62764 * 25 24 23 40 40 H 1.08999 * 110.91665 * 156.32828 * 25 24 23 41 41 H 1.08997 * 110.48437 * 203.38201 * 26 25 24 42 42 H 1.08999 * 110.60031 * 80.79001 * 26 25 24 43 43 H 1.08993 * 110.03572 * 238.56773 * 27 23 5 44 44 H 1.08998 * 110.03581 * 0.02562 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6423 -1.1693 0.1036 6 1 3.9652 -0.3203 0.7060 7 6 4.2432 -1.0649 -1.2745 8 8 3.5811 -1.3555 -2.2485 9 7 5.5162 -0.6486 -1.4248 10 6 6.0766 -0.5506 -2.7105 11 6 5.4285 -0.8522 -3.9217 12 7 6.2679 -0.6390 -4.9034 13 7 7.4804 -0.1954 -4.3602 14 6 8.6105 0.1346 -5.0672 15 1 9.4669 0.5469 -4.5545 16 6 8.6519 -0.0619 -6.4424 17 7 7.5780 -0.4662 -7.0805 18 14 10.2356 0.2491 -7.3830 19 1 10.9798 -1.0269 -7.5350 20 1 9.9146 0.7979 -8.7250 21 1 11.0713 1.2236 -6.6367 22 6 7.3389 -0.1484 -3.0034 23 6 4.1051 -2.4692 0.7646 24 6 3.6049 -3.6820 -0.0470 25 6 3.2504 -4.7387 1.0285 26 6 2.6347 -3.8803 2.1612 27 6 3.4883 -2.5952 2.1686 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6983 -2.0059 -0.0673 32 1 6.0457 -0.4165 -0.6458 33 1 4.4127 -1.2041 -4.0243 34 1 7.6069 -0.6029 -8.0403 35 1 8.0937 0.1544 -2.2928 36 1 5.1929 -2.4869 0.8317 37 1 2.7206 -3.4152 -0.6257 38 1 4.3928 -4.0538 -0.7020 39 1 4.1470 -5.2516 1.3764 40 1 2.5219 -5.4537 0.6463 41 1 2.7146 -4.3968 3.1177 42 1 1.5933 -3.6452 1.9414 43 1 4.2766 -2.6750 2.9171 44 1 2.8588 -1.7305 2.3790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139580064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:58 Heat of formation + Delta-G solvation = 0.857499 kcal Electronic energy + Delta-G solvation = -27312.365886 eV Core-core repulsion = 23459.205617 eV Total energy + Delta-G solvation = -3853.160269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67042 -39.53192 -38.50830 -37.76537 -34.38550 -34.02631 -33.11603 -31.22070 -30.16720 -29.05852 -28.91369 -27.78497 -25.64538 -24.43524 -21.35770 -21.23845 -20.70211 -20.27207 -19.59483 -19.27489 -17.53345 -17.13537 -16.85020 -16.30735 -15.61956 -15.40919 -15.11931 -14.94050 -14.73363 -14.28442 -13.98402 -13.60273 -13.44098 -13.35021 -13.22597 -12.90842 -12.83754 -12.61728 -12.21291 -11.66817 -11.53383 -11.36285 -11.32654 -11.25598 -11.22606 -10.96170 -10.88597 -10.81349 -10.79617 -10.50378 -10.08147 -9.92653 -9.72049 -9.12121 -8.80788 -8.66694 -8.00823 -6.64029 -6.52380 -4.18639 2.59523 2.85029 3.02416 3.07298 3.11803 3.13071 3.70535 3.73427 3.92899 4.33251 4.34443 4.44906 4.55762 4.76605 4.79443 4.98157 5.04211 5.05227 5.16061 5.19948 5.27172 5.28678 5.33922 5.42399 5.48319 5.56327 5.68301 5.69713 5.73293 5.88961 6.02962 6.09108 6.17208 6.28421 6.34522 6.51434 6.95860 7.00962 7.17955 7.29271 7.44463 7.90407 8.17627 8.25312 8.34228 8.68059 8.91628 9.42876 9.72000 10.43993 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.003007 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.866699 B = 9309.510163 C =10010.804707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.512 3.488 3 O -0.544 6.544 4 N -0.703 5.703 5 C 0.138 3.862 6 H 0.107 0.893 7 C 0.492 3.508 8 O -0.530 6.530 9 N -0.622 5.622 10 C -0.056 4.056 11 C -0.033 4.033 12 N -0.261 5.261 13 N -0.144 5.144 14 C -0.324 4.324 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.771 5.771 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.083 4.083 23 C -0.094 4.094 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.404 0.596 32 H 0.395 0.605 33 H 0.174 0.826 34 H 0.274 0.726 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.280 -6.304 18.635 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.421 6.421 4 N -0.356 5.356 5 C 0.028 3.972 6 H 0.124 0.876 7 C 0.277 3.723 8 O -0.406 6.406 9 N -0.264 5.264 10 C -0.162 4.162 11 C -0.208 4.208 12 N -0.092 5.092 13 N 0.088 4.912 14 C -0.456 4.456 15 H 0.133 0.867 16 C -0.171 4.171 17 N -0.397 5.397 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.234 4.234 23 C -0.113 4.113 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.161 4.161 27 C -0.157 4.157 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.241 0.759 32 H 0.228 0.772 33 H 0.191 0.809 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.257 -5.826 16.447 19.751 hybrid contribution 0.751 -0.040 0.808 1.104 sum -8.505 -5.865 17.255 20.112 Atomic orbital electron populations 1.21813 0.91588 1.04112 1.05244 1.20827 0.90673 0.83434 0.75136 1.90749 1.70640 1.31397 1.49321 1.45788 1.05833 1.09200 1.74800 1.20818 0.81803 1.00089 0.94470 0.87563 1.20665 0.81780 0.78737 0.91156 1.90571 1.60422 1.49383 1.40228 1.42495 1.12468 1.64443 1.07010 1.17280 0.94339 1.20154 0.84432 1.24062 1.00727 1.07274 0.88784 1.78233 0.89825 1.21765 1.19395 1.44527 1.08707 1.35907 1.02025 1.19866 0.90778 1.44169 0.90810 0.86664 1.25635 0.98781 0.95680 0.96961 1.70227 1.26850 1.33227 1.09424 0.85820 0.80302 0.79054 0.79015 1.19678 1.20127 1.18799 1.21266 0.97616 1.17439 0.87106 1.22039 1.01382 0.92865 0.95039 1.22468 1.02008 0.94255 0.97444 1.22510 1.00658 0.97420 0.95636 1.22368 0.99158 0.95797 0.98819 1.22203 0.99396 0.98423 0.95639 0.90657 0.88844 0.88631 0.75948 0.77184 0.80907 0.91545 0.83749 0.88998 0.90820 0.90866 0.91415 0.91473 0.91720 0.91717 0.91364 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.39 36.01 0.37 -1.03 16 2 C 0.51 6.73 7.92 -10.98 -0.09 6.64 16 3 O -0.54 -9.78 16.76 5.56 0.09 -9.69 16 4 N -0.70 -8.14 3.79 -54.93 -0.21 -8.35 16 5 C 0.14 1.74 1.94 -69.08 -0.13 1.61 16 6 H 0.11 1.35 7.55 -51.93 -0.39 0.95 16 7 C 0.49 8.79 6.42 -10.99 -0.07 8.71 16 8 O -0.53 -11.38 13.71 5.53 0.08 -11.31 16 9 N -0.62 -11.52 5.47 -10.00 -0.05 -11.57 16 10 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 11 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 12 N -0.26 -7.79 10.41 30.80 0.32 -7.47 16 13 N -0.14 -4.05 3.74 -11.41 -0.04 -4.09 16 14 C -0.32 -8.78 10.24 -14.81 -0.15 -8.93 16 15 H 0.12 2.79 7.84 -52.49 -0.41 2.38 16 16 C 0.05 1.22 5.50 -17.50 -0.10 1.13 16 17 N -0.77 -21.96 11.83 55.49 0.66 -21.30 16 18 Si 0.93 19.29 29.56 -169.99 -5.02 14.27 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.08 -2.02 11.49 -16.39 -0.19 -2.21 16 23 C -0.09 -0.91 2.80 -89.51 -0.25 -1.16 16 24 C -0.12 -1.27 5.50 -25.08 -0.14 -1.41 16 25 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 26 C -0.12 -0.82 6.83 -25.07 -0.17 -0.99 16 27 C -0.12 -0.88 6.19 -25.61 -0.16 -1.04 16 28 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.40 3.76 6.68 -40.82 -0.27 3.49 16 32 H 0.40 5.77 8.83 -40.82 -0.36 5.41 16 33 H 0.17 4.68 5.92 -52.49 -0.31 4.37 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.81 6.19 -51.93 -0.32 0.49 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.54 7.36 -51.93 -0.38 0.15 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -36.89 364.36 -6.92 -43.81 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.22 Total: 13.03 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.01 Total: -2.81 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.67 Total: -52.79 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.17 Total: -21.00 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.89 -6.92 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139580064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.672 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds