Wall clock time and date at job start Tue Mar 31 2020 12:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47263 * 2 1 4 4 C 1.50703 * 109.47064 * 119.99890 * 2 1 3 5 5 H 1.08002 * 119.99781 * 119.99712 * 4 2 1 6 6 C 1.37879 * 120.00011 * 300.00299 * 4 2 1 7 7 N 1.31512 * 119.99897 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99765 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47116 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47185 * 119.99991 * 8 6 4 11 11 H 1.48500 * 109.46881 * 239.99592 * 8 6 4 12 12 N 1.46495 * 109.47212 * 240.00071 * 2 1 3 13 13 C 1.34774 * 120.00350 * 84.99639 * 12 2 1 14 14 O 1.21593 * 119.99668 * 0.02562 * 13 12 2 15 15 N 1.34771 * 120.00179 * 180.02562 * 13 12 2 16 16 C 1.40202 * 119.99878 * 185.42459 * 15 13 12 17 17 C 1.38853 * 120.51444 * 338.74831 * 16 15 13 18 18 C 1.38814 * 118.44582 * 180.02562 * 17 16 15 19 19 C 1.38026 * 119.38609 * 0.02562 * 18 17 16 20 20 N 1.32021 * 120.98544 * 359.74495 * 19 18 17 21 21 C 1.32281 * 121.69281 * 0.51909 * 20 19 18 22 22 N 1.39210 * 119.74564 * 179.75688 * 21 20 19 23 23 C 1.47017 * 110.99638 * 329.74391 * 22 21 20 24 24 C 1.53096 * 109.29081 * 182.36589 * 23 22 21 25 25 O 1.43014 * 109.26263 * 303.22222 * 24 23 22 26 26 C 1.43027 * 113.77432 * 58.59987 * 25 24 23 27 27 C 1.47007 * 111.00012 * 93.37961 * 22 21 20 28 28 H 1.08998 * 109.46755 * 59.99741 * 1 2 3 29 29 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47203 * 299.99994 * 1 2 3 31 31 H 0.97003 * 120.00079 * 180.02562 * 7 6 4 32 32 H 0.97006 * 119.99822 * 265.00781 * 12 2 1 33 33 H 0.97002 * 120.00389 * 5.42245 * 15 13 12 34 34 H 1.08001 * 120.77296 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.30425 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.50712 * 180.02562 * 19 18 17 37 37 H 1.08994 * 109.50897 * 302.32561 * 23 22 21 38 38 H 1.09009 * 109.50758 * 62.41524 * 23 22 21 39 39 H 1.09000 * 109.50770 * 63.11418 * 24 23 22 40 40 H 1.09005 * 109.50322 * 183.23844 * 24 23 22 41 41 H 1.08993 * 109.50419 * 181.42612 * 26 25 24 42 42 H 1.08996 * 109.54019 * 61.31440 * 26 25 24 43 43 H 1.09005 * 109.50721 * 297.54181 * 27 22 21 44 44 H 1.08996 * 109.50959 * 57.63239 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1474 -2.2863 3.6038 10 1 3.1472 -0.1858 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1616 -2.4116 15 7 2.5958 -0.6538 -3.4576 16 6 2.8379 0.0687 -4.6345 17 6 2.2333 1.3014 -4.8421 18 6 2.5029 1.9796 -6.0229 19 6 3.3561 1.4143 -6.9490 20 7 3.9219 0.2426 -6.7255 21 6 3.6899 -0.4411 -5.6171 22 7 4.3045 -1.6754 -5.4255 23 6 4.5404 -2.3514 -6.7096 24 6 5.1618 -3.7264 -6.4507 25 8 6.3644 -3.5656 -5.6935 26 6 6.1711 -2.9113 -4.4364 27 6 5.5605 -1.5279 -4.6759 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.7094 1.1618 3.4844 32 1 2.2490 -1.6318 -1.1526 33 1 2.7514 -1.6110 -3.4355 34 1 1.5689 1.7225 -4.1021 35 1 2.0492 2.9406 -6.2151 36 1 3.5675 1.9404 -7.8682 37 1 3.5939 -2.4730 -7.2362 38 1 5.2203 -1.7531 -7.3163 39 1 4.4595 -4.3435 -5.8904 40 1 5.3912 -4.2070 -7.4018 41 1 7.1308 -2.8030 -3.9312 42 1 5.4982 -3.5038 -3.8166 43 1 6.2573 -0.9169 -5.2499 44 1 5.3587 -1.0477 -3.7185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157952705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:26 Heat of formation + Delta-G solvation = -12.833592 kcal Electronic energy + Delta-G solvation = -27407.425784 eV Core-core repulsion = 23553.671824 eV Total energy + Delta-G solvation = -3853.753959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10628 -39.63738 -38.83045 -35.83004 -35.43226 -34.33885 -32.60532 -31.55029 -31.33212 -30.02774 -28.44519 -26.82946 -25.31383 -24.49403 -23.55749 -22.64104 -21.29208 -20.60761 -19.97623 -18.43443 -17.75602 -17.47432 -16.44674 -16.17756 -15.79704 -15.64023 -15.32958 -15.25447 -15.10957 -14.79249 -14.52590 -14.05618 -14.00488 -13.63840 -13.30083 -12.95316 -12.58817 -12.48434 -12.33593 -11.87285 -11.73243 -11.60929 -11.18402 -11.10680 -10.92488 -10.86130 -10.64679 -10.34583 -10.29368 -10.22013 -9.88448 -9.57775 -9.26769 -9.10766 -8.77657 -8.62732 -8.18649 -7.73094 -6.18367 -4.27633 1.09540 1.40047 3.03986 3.20284 3.28570 3.28769 3.31324 3.57239 3.64150 3.95224 4.27508 4.44725 4.66487 4.78574 4.79781 4.90646 4.96323 5.00597 5.11720 5.14721 5.17211 5.28018 5.32501 5.41589 5.51827 5.62072 5.71518 5.79751 6.02379 6.25823 6.42878 6.51078 6.70604 6.75946 6.88473 6.91279 7.03673 7.12866 7.19985 7.37827 7.56398 7.75761 7.91439 7.93276 8.08657 8.64013 8.75575 9.11108 9.40429 10.87742 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.003515 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.374449 B = 7964.505997 C = 9555.080321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.279 3.721 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.715 5.715 13 C 0.693 3.307 14 O -0.582 6.582 15 N -0.677 5.677 16 C 0.159 3.841 17 C -0.099 4.099 18 C -0.155 4.155 19 C 0.073 3.927 20 N -0.492 5.492 21 C 0.245 3.755 22 N -0.479 5.479 23 C 0.029 3.971 24 C 0.062 3.938 25 O -0.385 6.385 26 C 0.065 3.935 27 C 0.022 3.978 28 H 0.015 0.985 29 H 0.026 0.974 30 H 0.091 0.909 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.411 0.589 34 H 0.180 0.820 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -5.736 -17.548 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.365 5.365 13 C 0.393 3.607 14 O -0.461 6.461 15 N -0.322 5.322 16 C 0.056 3.944 17 C -0.127 4.127 18 C -0.176 4.176 19 C -0.086 4.086 20 N -0.204 5.204 21 C 0.011 3.989 22 N -0.201 5.201 23 C -0.099 4.099 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.012 4.012 27 C -0.105 4.105 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.247 0.753 34 H 0.197 0.803 35 H 0.153 0.847 36 H 0.169 0.831 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.100 -5.309 -17.660 19.424 hybrid contribution 0.085 -0.341 1.093 1.148 sum 6.185 -5.650 -16.567 18.565 Atomic orbital electron populations 1.22111 0.98432 0.99185 1.00988 1.18727 0.90914 0.93782 0.78792 0.93181 1.21226 1.32557 1.13313 0.90168 0.91980 1.24875 0.94766 0.94946 0.99058 1.69907 1.35807 1.22379 1.23884 0.86376 0.78623 0.79508 0.82491 1.19727 1.20847 1.20843 1.45909 1.68120 1.13435 1.09037 1.16209 0.78787 0.85323 0.80373 1.90715 1.56971 1.14573 1.83850 1.42745 1.68811 1.11648 1.09033 1.18174 0.95485 0.93732 0.86971 1.22525 0.99022 0.93412 0.97781 1.22103 0.99960 1.01319 0.94210 1.22330 0.95523 0.91349 0.99437 1.67542 1.23266 1.08288 1.21343 1.19312 0.96508 0.91317 0.91716 1.59979 1.24040 1.15763 1.20361 1.22661 1.01983 0.95171 0.90075 1.22735 0.86802 0.95420 0.96553 1.87990 1.31647 1.79075 1.31618 1.22689 1.01450 0.91145 0.85882 1.22886 0.89358 0.98812 0.99469 0.96572 0.95448 0.89028 0.92553 0.77999 0.75329 0.80337 0.84664 0.83101 0.89697 0.91778 0.92243 0.88260 0.87981 0.91835 0.92879 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 2 C 0.28 6.84 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.23 11.32 55.43 0.63 -23.60 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.71 -14.15 5.07 -59.81 -0.30 -14.45 16 13 C 0.69 13.34 8.44 -86.93 -0.73 12.60 16 14 O -0.58 -13.08 12.78 5.28 0.07 -13.01 16 15 N -0.68 -10.31 5.32 -13.96 -0.07 -10.38 16 16 C 0.16 2.42 6.56 -83.26 -0.55 1.88 16 17 C -0.10 -1.53 8.98 -39.14 -0.35 -1.88 16 18 C -0.16 -1.93 10.10 -39.45 -0.40 -2.32 16 19 C 0.07 0.87 11.17 -17.55 -0.20 0.67 16 20 N -0.49 -6.67 9.04 -12.26 -0.11 -6.78 16 21 C 0.24 3.38 5.73 -154.71 -0.89 2.50 16 22 N -0.48 -5.67 4.01 -172.68 -0.69 -6.37 16 23 C 0.03 0.30 5.09 -3.71 -0.02 0.28 16 24 C 0.06 0.56 7.01 37.21 0.26 0.82 16 25 O -0.38 -4.20 10.83 -35.23 -0.38 -4.58 16 26 C 0.07 0.63 7.01 37.21 0.26 0.90 16 27 C 0.02 0.24 5.59 -3.71 -0.02 0.22 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.39 6.58 8.56 -40.82 -0.35 6.23 16 33 H 0.41 5.30 8.24 -40.82 -0.34 4.96 16 34 H 0.18 3.18 5.29 -52.51 -0.28 2.90 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.75 7.68 -51.92 -0.40 0.35 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -30.20 359.62 -9.59 -39.79 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.26 Total: 12.06 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -2.86 Total: 6.79 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.55 Total: -61.58 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.31 Total: -17.60 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.20 -9.59 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157952705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.958 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds