Wall clock time and date at job start Tue Mar 31 2020 12:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47543 * 2 1 4 4 C 1.50704 * 109.47499 * 239.99746 * 2 1 3 5 5 H 1.07997 * 120.00205 * 240.00123 * 4 2 1 6 6 C 1.37876 * 119.99872 * 59.99729 * 4 2 1 7 7 N 1.31517 * 119.99877 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47611 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47360 * 120.00329 * 8 6 4 11 11 H 1.48510 * 109.46817 * 240.00187 * 8 6 4 12 12 N 1.46505 * 109.47247 * 119.99556 * 2 1 3 13 13 C 1.34777 * 120.00279 * 275.00337 * 12 2 1 14 14 O 1.21589 * 119.99727 * 359.97438 * 13 12 2 15 15 N 1.34770 * 119.99935 * 179.97438 * 13 12 2 16 16 C 1.40203 * 119.99798 * 184.29648 * 15 13 12 17 17 C 1.38859 * 120.51052 * 335.00410 * 16 15 13 18 18 C 1.38818 * 118.44447 * 179.72451 * 17 16 15 19 19 C 1.38031 * 119.38042 * 0.02562 * 18 17 16 20 20 N 1.32025 * 120.99265 * 359.97438 * 19 18 17 21 21 C 1.32288 * 121.68999 * 0.02562 * 20 19 18 22 22 N 1.39207 * 119.74450 * 180.02562 * 21 20 19 23 23 C 1.47007 * 111.00359 * 106.60409 * 22 21 20 24 24 C 1.53095 * 109.26078 * 177.60916 * 23 22 21 25 25 O 1.43009 * 109.26075 * 56.84585 * 24 23 22 26 26 C 1.43015 * 113.73882 * 301.34001 * 25 24 23 27 27 C 1.47015 * 110.99580 * 342.96738 * 22 21 20 28 28 H 1.09000 * 109.47336 * 300.00174 * 1 2 3 29 29 H 1.09000 * 109.47301 * 60.00471 * 1 2 3 30 30 H 1.08997 * 109.46887 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99808 * 179.97438 * 7 6 4 32 32 H 0.97007 * 119.99849 * 94.99896 * 12 2 1 33 33 H 0.96999 * 120.00262 * 4.30799 * 15 13 12 34 34 H 1.07999 * 120.77458 * 359.70508 * 17 16 15 35 35 H 1.07997 * 120.30852 * 180.02562 * 18 17 16 36 36 H 1.07997 * 119.50422 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.50708 * 297.54864 * 23 22 21 38 38 H 1.09004 * 109.50334 * 57.67165 * 23 22 21 39 39 H 1.09007 * 109.50420 * 296.91350 * 24 23 22 40 40 H 1.08997 * 109.54280 * 176.80625 * 24 23 22 41 41 H 1.09004 * 109.50226 * 298.72162 * 26 25 24 42 42 H 1.09008 * 109.54556 * 178.62520 * 26 25 24 43 43 H 1.09002 * 109.51001 * 302.32936 * 27 22 21 44 44 H 1.09004 * 109.50286 * 62.41897 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1467 -2.2871 -3.6037 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 7 2.0184 -0.6905 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1617 2.4116 15 7 2.5958 -0.6536 3.4577 16 6 2.6445 0.0211 4.6858 17 6 2.7442 1.4055 4.7262 18 6 2.7834 2.0297 5.9655 19 6 2.7232 1.2634 7.1119 20 7 2.6286 -0.0518 7.0463 21 6 2.5881 -0.6887 5.8876 22 7 2.4875 -2.0770 5.8656 23 6 1.1401 -2.5012 5.4587 24 6 1.0911 -4.0299 5.3903 25 8 1.4691 -4.5712 6.6589 26 6 2.7763 -4.1787 7.0859 27 6 2.8424 -2.6515 7.1715 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7087 1.1610 -3.4845 32 1 2.2491 -1.6318 1.1527 33 1 2.8853 -1.5776 3.4002 34 1 2.7906 1.9830 3.8147 35 1 2.8603 3.1049 6.0320 36 1 2.7531 1.7470 8.0771 37 1 0.4111 -2.1459 6.1870 38 1 0.9082 -2.0854 4.4782 39 1 1.7815 -4.3822 4.6239 40 1 0.0791 -4.3516 5.1442 41 1 3.5158 -4.5354 6.3689 42 1 2.9838 -4.6075 8.0664 43 1 3.8532 -2.3455 7.4412 44 1 2.1411 -2.2980 7.9273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157952844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:29 Heat of formation + Delta-G solvation = -12.907335 kcal Electronic energy + Delta-G solvation = -27489.703073 eV Core-core repulsion = 23635.945916 eV Total energy + Delta-G solvation = -3853.757157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15658 -39.61120 -38.85081 -35.87876 -35.43417 -34.34386 -32.59999 -31.57450 -31.32065 -30.04095 -28.46360 -26.84021 -25.31649 -24.63774 -23.40073 -22.65971 -21.29706 -20.65139 -19.95482 -18.43629 -17.79793 -17.47084 -16.48903 -16.14556 -15.86488 -15.66172 -15.28882 -15.25146 -15.04450 -14.80040 -14.53482 -14.20607 -14.02512 -13.53245 -13.37126 -12.94600 -12.59490 -12.49836 -12.30652 -11.87545 -11.74419 -11.63085 -11.17541 -11.11579 -10.94942 -10.84786 -10.63510 -10.34782 -10.29946 -10.24579 -9.89902 -9.65024 -9.32693 -9.10911 -8.80844 -8.62626 -8.15563 -7.71061 -6.18502 -4.27864 1.10596 1.38996 3.03308 3.20210 3.24681 3.28673 3.31261 3.58079 3.62839 3.96071 4.27331 4.40652 4.65712 4.75599 4.79565 4.88368 4.93549 5.00276 5.10115 5.14500 5.16263 5.26717 5.31418 5.41165 5.50870 5.59913 5.70817 5.78104 6.01491 6.23562 6.40428 6.49633 6.68860 6.74018 6.86877 6.90254 7.02460 7.11192 7.18000 7.36537 7.56151 7.74913 7.91194 7.93788 8.08358 8.63669 8.75488 9.10870 9.40267 10.87557 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.003419 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.841719 B = 8187.055688 C = 9518.866595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.715 5.715 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.680 5.680 16 C 0.145 3.855 17 C -0.085 4.085 18 C -0.163 4.163 19 C 0.079 3.921 20 N -0.496 5.496 21 C 0.255 3.745 22 N -0.477 5.477 23 C 0.018 3.982 24 C 0.065 3.935 25 O -0.385 6.385 26 C 0.061 3.939 27 C 0.032 3.968 28 H 0.015 0.985 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.409 0.591 34 H 0.172 0.828 35 H 0.135 0.865 36 H 0.153 0.847 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -6.393 18.236 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.366 5.366 13 C 0.392 3.608 14 O -0.461 6.461 15 N -0.327 5.327 16 C 0.043 3.957 17 C -0.114 4.114 18 C -0.184 4.184 19 C -0.079 4.079 20 N -0.209 5.209 21 C 0.021 3.979 22 N -0.198 5.198 23 C -0.108 4.108 24 C -0.012 4.012 25 O -0.303 6.303 26 C -0.016 4.016 27 C -0.095 4.095 28 H 0.034 0.966 29 H 0.110 0.890 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.245 0.755 34 H 0.189 0.811 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.104 -6.056 18.488 19.701 hybrid contribution 0.270 -0.266 -1.264 1.320 sum 3.374 -6.322 17.225 18.656 Atomic orbital electron populations 1.22104 0.98441 0.99138 1.00971 1.18721 0.90894 0.93777 0.78779 0.93191 1.21231 1.32552 1.13330 0.90178 0.91973 1.24876 0.94762 0.94950 0.99066 1.69910 1.35761 1.22425 1.23884 0.86375 0.78611 0.79516 0.82481 1.19729 1.20842 1.20848 1.45907 1.68155 1.13391 1.09122 1.16203 0.78672 0.85461 0.80438 1.90781 1.57340 1.14132 1.83826 1.42797 1.67366 1.16490 1.06078 1.18084 1.01111 0.92126 0.84336 1.22245 0.95717 0.93025 1.00380 1.22054 1.02199 1.01479 0.92639 1.22339 0.98559 0.88404 0.98615 1.67536 1.14965 1.11501 1.26874 1.19368 1.01326 0.89286 0.87925 1.59756 1.25875 1.04299 1.29905 1.22931 0.87932 0.97363 1.02615 1.22694 1.01684 0.90825 0.85975 1.87994 1.33444 1.72043 1.36820 1.22762 0.84947 0.93147 1.00793 1.22616 1.02896 0.94650 0.89368 0.96632 0.89025 0.95473 0.92552 0.78040 0.75485 0.81102 0.84671 0.83003 0.92870 0.88846 0.91816 0.87859 0.92241 0.88201 0.89348 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 2 C 0.28 6.84 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.23 11.32 55.43 0.63 -23.60 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.72 -14.10 5.07 -59.81 -0.30 -14.40 16 13 C 0.69 13.28 8.43 -86.92 -0.73 12.55 16 14 O -0.58 -13.14 12.96 5.29 0.07 -13.07 16 15 N -0.68 -10.30 4.15 -13.96 -0.06 -10.36 16 16 C 0.15 2.21 6.28 -83.26 -0.52 1.69 16 17 C -0.09 -1.32 8.90 -39.14 -0.35 -1.66 16 18 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 19 C 0.08 0.94 11.17 -17.54 -0.20 0.75 16 20 N -0.50 -6.68 8.86 -12.26 -0.11 -6.79 16 21 C 0.25 3.53 6.05 -154.71 -0.94 2.59 16 22 N -0.48 -5.66 4.14 -172.68 -0.71 -6.37 16 23 C 0.02 0.21 5.34 -3.72 -0.02 0.19 16 24 C 0.07 0.63 7.01 37.21 0.26 0.89 16 25 O -0.38 -4.18 10.83 -35.23 -0.38 -4.56 16 26 C 0.06 0.54 7.01 37.21 0.26 0.80 16 27 C 0.03 0.34 4.89 -3.71 -0.02 0.32 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.39 6.52 8.56 -40.82 -0.35 6.18 16 33 H 0.41 5.22 8.12 -40.82 -0.33 4.89 16 34 H 0.17 3.03 5.59 -52.49 -0.29 2.74 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.12 6.79 -51.93 -0.35 0.77 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.09 0.91 8.13 -51.93 -0.42 0.49 16 44 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -30.34 356.96 -9.60 -39.94 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.21 Total: 11.87 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.88 Total: 6.84 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.56 Total: -61.52 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.31 Total: -17.63 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.34 -9.60 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157952844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.034 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds