Wall clock time and date at job start Tue Mar 31 2020 12:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47201 * 2 1 4 4 C 1.53004 * 109.46801 * 239.99669 * 2 1 3 5 5 C 1.52999 * 109.46879 * 65.00600 * 4 2 1 6 6 C 1.50702 * 109.47077 * 179.97438 * 5 4 2 7 7 C 1.38210 * 120.01549 * 99.99703 * 6 5 4 8 8 C 1.38222 * 120.02831 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.05373 * 359.97318 * 8 7 6 10 10 C 1.38187 * 120.02189 * 0.02562 * 9 8 7 11 11 C 1.38446 * 120.01132 * 279.99770 * 6 5 4 12 12 F 1.35101 * 120.02484 * 0.02562 * 11 6 5 13 13 C 1.50699 * 109.46633 * 120.00041 * 2 1 3 14 14 O 1.20822 * 120.00114 * 86.26268 * 13 2 1 15 15 O 1.34227 * 119.99817 * 266.25456 * 13 2 1 16 16 C 1.45201 * 116.99706 * 185.21927 * 15 13 2 17 17 C 1.52999 * 109.46875 * 176.47744 * 16 15 13 18 18 C 1.50703 * 115.55000 * 64.31238 * 17 16 15 19 19 H 1.07999 * 120.00267 * 269.61276 * 18 17 16 20 20 C 1.37881 * 119.99715 * 89.61736 * 18 17 16 21 21 N 1.31517 * 119.99602 * 178.13279 * 20 18 17 22 22 Si 1.86791 * 120.00308 * 358.13326 * 20 18 17 23 23 H 1.48502 * 109.47342 * 86.07371 * 22 20 18 24 24 H 1.48506 * 109.47152 * 206.07467 * 22 20 18 25 25 H 1.48499 * 109.47190 * 326.07727 * 22 20 18 26 26 C 1.52997 * 117.50198 * 278.64056 * 17 16 15 27 27 C 1.53001 * 117.50083 * 209.97962 * 17 16 15 28 28 H 1.08997 * 109.47075 * 175.53970 * 1 2 3 29 29 H 1.08997 * 109.46997 * 295.54704 * 1 2 3 30 30 H 1.09004 * 109.46641 * 55.54499 * 1 2 3 31 31 H 1.08994 * 109.47583 * 305.00046 * 4 2 1 32 32 H 1.09007 * 109.46801 * 184.99949 * 4 2 1 33 33 H 1.09001 * 109.47438 * 59.99744 * 5 4 2 34 34 H 1.08999 * 109.47136 * 299.99469 * 5 4 2 35 35 H 1.08003 * 119.98980 * 0.02562 * 7 6 5 36 36 H 1.08001 * 119.97937 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.99248 * 180.02562 * 9 8 7 38 38 H 1.07995 * 120.01217 * 179.74273 * 10 9 8 39 39 H 1.09000 * 109.47080 * 296.47307 * 16 15 13 40 40 H 1.09001 * 109.47389 * 56.47744 * 16 15 13 41 41 H 0.96998 * 120.00249 * 180.02562 * 21 20 18 42 42 H 1.09001 * 117.49775 * 0.02562 * 26 17 16 43 43 H 1.08999 * 117.50532 * 145.01607 * 26 17 16 44 44 H 1.08992 * 117.50348 * 214.98018 * 27 17 16 45 45 H 1.09005 * 117.49680 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.6353 0.0689 -2.4953 6 6 2.1381 -0.6413 -3.7258 7 6 1.2791 -1.4282 -4.4693 8 6 1.7401 -2.0801 -5.5977 9 6 3.0607 -1.9454 -5.9842 10 6 3.9214 -1.1590 -5.2423 11 6 3.4607 -0.5056 -4.1117 12 9 4.3014 0.2630 -3.3854 13 6 2.0323 -0.7104 1.2305 14 8 2.1693 -1.9108 1.2214 15 8 2.3275 -0.0096 2.3365 16 6 2.9154 -0.7422 3.4437 17 6 3.2613 0.2308 4.5727 18 6 2.0881 0.9278 5.2122 19 1 1.7457 1.8755 4.8237 20 6 1.4520 0.3556 6.2934 21 7 0.4517 0.9813 6.8745 22 14 2.0109 -1.3080 6.9330 23 1 3.1240 -1.1190 7.8976 24 1 0.8765 -1.9838 7.6124 25 1 2.4768 -2.1438 5.7974 26 6 4.5696 1.0149 4.4536 27 6 4.4484 -0.1224 5.4709 28 1 -0.3633 -1.0245 -0.0799 29 1 -0.3633 0.4432 0.9272 30 1 -0.3633 0.5814 -0.8474 31 1 1.6054 -1.7198 -1.2952 32 1 3.1264 -0.7996 -1.2056 33 1 2.0700 1.0674 -2.4494 34 1 0.5490 0.1471 -2.5390 35 1 0.2471 -1.5340 -4.1687 36 1 1.0680 -2.6946 -6.1784 37 1 3.4197 -2.4548 -6.8662 38 1 4.9540 -1.0572 -5.5420 39 1 2.2036 -1.4830 3.8080 40 1 3.8221 -1.2445 3.1065 41 1 0.0044 0.5790 7.6354 42 1 5.1838 0.8378 3.5707 43 1 4.5821 2.0348 4.8379 44 1 4.3812 0.1497 6.5242 45 1 4.9828 -1.0483 5.2578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174753992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:48 Heat of formation + Delta-G solvation = -99.360177 kcal Electronic energy + Delta-G solvation = -26312.221868 eV Core-core repulsion = 22402.503122 eV Total energy + Delta-G solvation = -3909.718746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.09451 -40.12145 -39.38209 -37.31954 -36.02613 -35.24029 -32.58296 -32.09836 -30.84474 -28.59481 -27.35399 -25.64002 -25.11098 -23.16201 -22.90225 -21.72594 -21.23994 -19.61222 -19.11628 -17.87703 -17.27861 -16.73647 -16.66235 -16.12818 -15.85887 -15.77719 -15.44620 -14.89413 -14.62247 -14.49615 -14.02327 -13.81240 -13.53768 -13.24579 -13.16346 -12.78578 -12.66329 -12.50142 -12.35987 -12.16303 -12.05649 -11.84316 -11.47055 -11.41226 -11.17379 -10.91858 -10.88102 -10.79658 -10.52445 -10.20745 -10.00158 -9.91984 -9.61443 -9.27572 -9.02571 -8.92306 -8.60625 -8.57335 -6.12237 -4.14862 0.84015 0.88194 2.65222 3.13508 3.26984 3.29883 3.36926 3.40567 3.99044 4.29588 4.39614 4.41301 4.60222 4.70015 4.78639 4.90489 4.92815 5.02845 5.04790 5.13983 5.22517 5.29440 5.41490 5.50968 5.61805 5.66696 5.70606 5.76280 5.77164 5.81920 5.90059 5.96565 5.99013 6.04109 6.08615 6.12136 6.17795 6.23985 6.30928 6.41325 6.58531 6.66972 6.91018 7.07087 7.17638 7.68966 8.30303 8.50329 8.92845 9.50030 10.99671 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.002579 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.194841 B =10852.480048 C =11275.812314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.104 0.896 4 C -0.100 4.100 5 C -0.081 4.081 6 C -0.111 4.111 7 C -0.089 4.089 8 C -0.130 4.130 9 C -0.098 4.098 10 C -0.154 4.154 11 C 0.100 3.900 12 F -0.136 7.136 13 C 0.458 3.542 14 O -0.524 6.524 15 O -0.330 6.330 16 C 0.108 3.892 17 C -0.005 4.005 18 C -0.481 4.481 19 H 0.082 0.918 20 C 0.076 3.924 21 N -0.896 5.896 22 Si 0.878 3.122 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.264 1.264 26 C -0.173 4.173 27 C -0.193 4.193 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.265 0.735 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -4.087 -24.976 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.122 0.878 4 C -0.137 4.137 5 C -0.118 4.118 6 C -0.112 4.112 7 C -0.107 4.107 8 C -0.148 4.148 9 C -0.116 4.116 10 C -0.173 4.173 11 C 0.081 3.919 12 F -0.114 7.114 13 C 0.301 3.699 14 O -0.414 6.414 15 O -0.244 6.244 16 C 0.034 3.966 17 C -0.006 4.006 18 C -0.518 4.518 19 H 0.100 0.900 20 C -0.126 4.126 21 N -0.533 5.533 22 Si 0.706 3.294 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.188 1.188 26 C -0.210 4.210 27 C -0.230 4.230 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.741 -4.409 -24.727 25.266 hybrid contribution 0.523 -0.995 0.672 1.309 sum 3.263 -5.404 -24.055 24.869 Atomic orbital electron populations 1.21808 0.91879 1.03000 1.03548 1.20959 0.98165 1.01195 0.89844 0.87775 1.21472 1.01721 0.99514 0.91004 1.20629 1.01983 0.98809 0.90420 1.19990 0.92310 1.00397 0.98506 1.21011 0.99768 0.95498 0.94386 1.21219 0.95990 1.00262 0.97316 1.21009 0.93407 0.97763 0.99451 1.21171 1.01312 0.99501 0.95310 1.17622 0.87885 0.94350 0.92036 1.91513 1.70452 1.72886 1.76551 1.23623 0.74481 0.86623 0.85124 1.90598 1.50514 1.16171 1.84080 1.86567 1.72072 1.42744 1.23052 1.23007 0.95747 0.94054 0.83796 1.19337 0.89854 0.97340 0.94095 1.20219 1.11402 1.07151 1.13009 0.90017 1.24998 0.94487 0.97139 0.96020 1.69880 1.22482 1.38549 1.22410 0.86900 0.77990 0.84844 0.79626 1.20056 1.21961 1.18834 1.22835 1.02071 0.96613 0.99501 1.23015 1.03738 0.98813 0.97466 0.91851 0.90956 0.90944 0.90302 0.91357 0.90155 0.89699 0.84895 0.85366 0.85178 0.84831 0.91488 0.93684 0.92492 0.90839 0.89081 0.88657 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.16 0.33 -1.37 16 2 C -0.08 -1.11 2.82 -91.77 -0.26 -1.37 16 3 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.10 -1.18 4.22 -26.73 -0.11 -1.29 16 5 C -0.08 -0.75 4.82 -27.88 -0.13 -0.89 16 6 C -0.11 -1.06 5.14 -104.55 -0.54 -1.60 16 7 C -0.09 -0.70 9.67 -39.60 -0.38 -1.08 16 8 C -0.13 -0.90 10.04 -39.58 -0.40 -1.29 16 9 C -0.10 -0.69 10.04 -39.59 -0.40 -1.09 16 10 C -0.15 -1.31 10.03 -39.51 -0.40 -1.71 16 11 C 0.10 1.04 7.24 -39.42 -0.29 0.76 16 12 F -0.14 -1.61 16.66 2.25 0.04 -1.57 16 13 C 0.46 8.54 6.96 36.00 0.25 8.79 16 14 O -0.52 -10.87 16.10 -18.75 -0.30 -11.17 16 15 O -0.33 -7.08 10.14 -39.25 -0.40 -7.48 16 16 C 0.11 2.43 5.04 37.16 0.19 2.62 16 17 C -0.01 -0.13 1.11 -155.66 -0.17 -0.30 16 18 C -0.48 -13.47 9.36 -34.44 -0.32 -13.79 16 19 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 21 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 22 Si 0.88 21.79 24.74 -169.99 -4.20 17.59 16 23 H -0.27 -6.57 6.95 56.52 0.39 -6.17 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.26 -6.32 6.03 56.52 0.34 -5.98 16 26 C -0.17 -3.56 9.96 -26.70 -0.27 -3.83 16 27 C -0.19 -4.12 7.56 -26.69 -0.20 -4.32 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.63 6.79 -51.93 -0.35 0.27 16 31 H 0.08 0.98 8.02 -51.93 -0.42 0.56 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.74 7.95 -51.93 -0.41 0.32 16 34 H 0.08 0.63 6.53 -51.93 -0.34 0.29 16 35 H 0.13 0.80 8.04 -52.48 -0.42 0.38 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.07 1.61 6.88 -51.93 -0.36 1.26 16 40 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 44 H 0.10 2.11 6.91 -51.93 -0.36 1.75 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -32.46 376.71 -8.55 -41.01 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.93 Total: 1.98 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -3.20 Total: -19.67 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.70 Total: -18.66 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.20 Total: 17.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.46 -8.55 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174753992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.350 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds