Wall clock time and date at job start Tue Mar 31 2020 13:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45194 * 109.47405 * 2 1 4 4 C 1.34725 * 117.00487 * 180.02562 * 3 2 1 5 5 O 1.21489 * 119.99940 * 0.02562 * 4 3 2 6 6 C 1.47584 * 120.00394 * 180.02562 * 4 3 2 7 7 N 1.31857 * 126.52140 * 359.97129 * 6 4 3 8 8 N 1.28467 * 110.06333 * 180.02562 * 7 6 4 9 9 C 1.46497 * 124.88273 * 180.02562 * 8 7 6 10 10 C 1.35052 * 110.24093 * 0.26907 * 8 7 6 11 11 C 1.35343 * 107.23834 * 359.56968 * 10 8 7 12 12 C 1.50700 * 127.24984 * 180.15299 * 11 10 8 13 13 N 1.46896 * 109.46975 * 260.31149 * 12 11 10 14 14 C 1.46902 * 111.00046 * 169.99798 * 13 12 11 15 15 C 1.50700 * 109.47169 * 283.58740 * 14 13 12 16 16 H 1.08004 * 120.00092 * 4.24085 * 15 14 13 17 17 C 1.37878 * 120.00284 * 184.23575 * 15 14 13 18 18 N 1.31519 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47202 * 60.00758 * 19 17 15 21 21 H 1.48501 * 109.46822 * 180.02562 * 19 17 15 22 22 H 1.48490 * 109.47253 * 300.00158 * 19 17 15 23 23 C 1.46901 * 111.00065 * 293.94848 * 13 12 11 24 24 C 1.52997 * 109.47190 * 172.92852 * 23 13 12 25 25 C 1.47208 * 109.46879 * 185.56674 * 24 23 13 26 26 N 4.72705 * 116.94385 * 261.06154 * 2 1 3 27 27 H 1.09000 * 109.46693 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46639 * 299.99614 * 1 2 3 29 29 H 1.08997 * 109.47075 * 60.00091 * 1 2 3 30 30 H 1.09009 * 109.47110 * 239.99948 * 2 1 3 31 31 H 1.09005 * 109.47537 * 120.00332 * 2 1 3 32 32 H 1.09005 * 109.47207 * 90.02575 * 9 8 7 33 33 H 1.09001 * 109.47763 * 210.02684 * 9 8 7 34 34 H 1.09006 * 109.46923 * 330.02886 * 9 8 7 35 35 H 1.08002 * 126.37879 * 179.69957 * 10 8 7 36 36 H 1.09000 * 109.46939 * 20.30743 * 12 11 10 37 37 H 1.08997 * 109.47362 * 140.30945 * 12 11 10 38 38 H 1.08998 * 109.47412 * 43.58790 * 14 13 12 39 39 H 1.09005 * 109.47433 * 163.58804 * 14 13 12 40 40 H 0.96997 * 119.99838 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46944 * 292.92826 * 23 13 12 42 42 H 1.09002 * 109.47103 * 52.92813 * 23 13 12 43 43 H 1.09004 * 109.47199 * 305.56369 * 24 23 13 44 44 H 1.08993 * 109.47627 * 65.56728 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3497 1.5454 -0.0005 5 8 4.0897 0.5820 -0.0015 6 6 3.9138 2.9092 0.0000 7 7 3.2346 4.0394 0.0005 8 7 4.0419 5.0387 0.0003 9 6 3.6335 6.4456 0.0013 10 6 5.3211 4.6060 -0.0062 11 6 5.2869 3.2530 -0.0006 12 6 6.4630 2.3107 -0.0012 13 7 6.6942 1.8171 -1.3653 14 6 7.9665 1.0881 -1.4528 15 6 9.1085 2.0712 -1.4733 16 1 8.9141 3.1273 -1.3572 17 6 10.4015 1.6227 -1.6402 18 7 10.6383 0.3368 -1.7820 19 14 11.8170 2.8413 -1.6648 20 1 11.8570 3.5797 -0.3770 21 1 13.0956 2.1110 -1.8570 22 1 11.6237 3.8020 -2.7805 23 6 5.5756 0.9800 -1.8190 24 6 5.7660 0.6310 -3.2964 25 6 4.5821 -0.0940 -3.7859 26 7 3.6719 -0.6547 -4.1628 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.5334 6.7943 1.0292 33 1 4.3862 7.0429 -0.5133 34 1 2.6768 6.5466 -0.5114 35 1 6.2066 5.2244 -0.0124 36 1 7.3505 2.8372 0.3499 37 1 6.2546 1.4691 0.6593 38 1 8.0687 0.4306 -0.5895 39 1 7.9826 0.4935 -2.3663 40 1 11.5479 0.0213 -1.8998 41 1 5.5457 0.0633 -1.2300 42 1 4.6397 1.5241 -1.6919 43 1 5.8948 1.5474 -3.8725 44 1 6.6495 0.0030 -3.4104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187359296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:05 Heat of formation + Delta-G solvation = 41.377749 kcal Electronic energy + Delta-G solvation = -27617.738600 eV Core-core repulsion = 23766.335421 eV Total energy + Delta-G solvation = -3851.403179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.65135 -40.11019 -37.56409 -36.40427 -35.88596 -33.63832 -32.59596 -31.92809 -31.48578 -30.14614 -28.10724 -26.96218 -25.35233 -23.82632 -23.09372 -22.37318 -20.98687 -20.20908 -19.70814 -17.64717 -17.35704 -16.86679 -16.58677 -16.33403 -15.99990 -15.94243 -14.95823 -14.54827 -14.32572 -14.16946 -13.89411 -13.52669 -13.39843 -13.32374 -13.05823 -12.84605 -12.82883 -12.53731 -12.20548 -12.03993 -12.00398 -11.88257 -11.64239 -11.51607 -11.26749 -10.90300 -10.75551 -10.70157 -10.57110 -10.33413 -10.21661 -10.17132 -9.64412 -9.27608 -9.18294 -8.70009 -8.38955 -7.19468 -6.00214 -4.01300 1.44329 2.20619 2.32348 2.84733 3.11107 3.16708 3.30237 3.33518 3.38967 3.40191 4.29648 4.37099 4.47525 4.78676 4.87459 4.87984 4.89827 4.93506 5.14556 5.20036 5.23116 5.29463 5.38001 5.58392 5.61443 5.64791 5.69623 5.71311 5.81261 5.85695 6.07862 6.28994 6.39800 6.43392 6.51592 6.63852 6.75216 6.80720 7.22814 7.39111 7.76508 7.82708 7.91798 8.07368 8.10478 8.22190 8.55172 9.05597 9.62462 11.10100 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.004449 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.664159 B = 6292.101573 C = 7910.104564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.348 6.348 4 C 0.547 3.453 5 O -0.481 6.481 6 C -0.008 4.008 7 N -0.244 5.244 8 N -0.283 5.283 9 C 0.089 3.911 10 C -0.007 4.007 11 C -0.115 4.115 12 C 0.134 3.866 13 N -0.527 5.527 14 C 0.186 3.814 15 C -0.503 4.503 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.895 3.105 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.067 3.933 24 C -0.038 4.038 25 C 0.224 3.776 26 N -0.464 5.464 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.188 0.812 36 H 0.093 0.907 37 H 0.046 0.954 38 H -0.006 1.006 39 H 0.039 0.961 40 H 0.261 0.739 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.112 0.888 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.144 9.099 5.065 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.264 6.264 4 C 0.389 3.611 5 O -0.366 6.366 6 C -0.165 4.165 7 N -0.081 5.081 8 N -0.073 5.073 9 C -0.052 4.052 10 C -0.149 4.149 11 C -0.125 4.125 12 C 0.005 3.995 13 N -0.251 5.251 14 C 0.062 3.938 15 C -0.542 4.542 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.063 4.063 24 C -0.078 4.078 25 C -0.093 4.093 26 N -0.142 5.142 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.205 0.795 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.012 0.988 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.130 0.870 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.233 8.737 4.161 19.764 hybrid contribution 1.993 -0.187 0.553 2.077 sum -15.240 8.550 4.714 18.099 Atomic orbital electron populations 1.21780 0.92729 1.02788 1.03419 1.23031 0.95272 0.80137 1.02745 1.86605 1.23604 1.32020 1.84216 1.19574 0.80455 0.87586 0.73490 1.90951 1.59767 1.41226 1.44676 1.20609 0.91929 0.89810 1.14158 1.73590 1.22348 0.94160 1.18039 1.45339 1.04256 1.06778 1.50897 1.22161 1.03483 0.75196 1.04312 1.22709 0.88516 0.95307 1.08348 1.20507 0.93416 0.93651 1.04913 1.20301 0.93060 0.95053 0.91049 1.62159 1.02938 1.38787 1.21239 1.19868 0.84045 0.93118 0.96791 1.21108 0.90302 0.93870 1.48931 0.91909 1.24967 0.98836 0.95095 0.95632 1.69939 1.20721 1.13048 1.50075 0.86611 0.81464 0.81109 0.78466 1.20384 1.21544 1.20284 1.22339 0.95405 0.97172 0.91341 1.19605 0.89748 0.99967 0.98493 1.29401 0.94407 0.92984 0.92521 1.80998 1.12060 1.10860 1.10308 0.90314 0.91560 0.91520 0.91138 0.91130 0.89788 0.88394 0.88699 0.79544 0.88860 0.93639 0.98817 0.94306 0.92908 0.92784 0.92158 0.86970 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 37.16 0.38 -1.02 16 2 C 0.06 0.77 6.19 37.16 0.23 1.01 16 3 O -0.35 -5.33 10.23 -40.56 -0.41 -5.75 16 4 C 0.55 9.23 6.64 34.54 0.23 9.45 16 5 O -0.48 -8.80 10.97 -19.26 -0.21 -9.01 16 6 C -0.01 -0.13 6.31 -82.78 -0.52 -0.65 16 7 N -0.24 -3.63 11.99 33.41 0.40 -3.23 16 8 N -0.28 -3.35 3.70 -68.12 -0.25 -3.60 16 9 C 0.09 0.55 11.31 59.85 0.68 1.23 16 10 C -0.01 -0.09 11.40 -17.17 -0.20 -0.28 16 11 C -0.12 -1.85 5.34 -104.39 -0.56 -2.41 16 12 C 0.13 2.47 4.95 -4.98 -0.02 2.45 16 13 N -0.53 -10.54 4.43 -237.52 -1.05 -11.59 16 14 C 0.19 4.45 4.63 -4.97 -0.02 4.43 16 15 C -0.50 -12.99 8.63 -34.44 -0.30 -13.29 16 16 H 0.06 1.58 7.71 -52.48 -0.40 1.17 16 17 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 18 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.07 1.24 3.04 -3.83 -0.01 1.23 16 24 C -0.04 -0.63 5.47 -29.52 -0.16 -0.79 16 25 C 0.22 3.86 15.42 -20.84 -0.32 3.54 16 26 N -0.46 -8.66 18.52 42.06 0.78 -7.88 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.39 8.13 -51.93 -0.42 -0.04 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.09 1.74 7.39 -51.93 -0.38 1.36 16 37 H 0.05 0.89 7.24 -51.93 -0.38 0.51 16 38 H -0.01 -0.16 7.99 -51.93 -0.41 -0.57 16 39 H 0.04 0.96 5.79 -51.93 -0.30 0.66 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.05 1.09 6.46 -51.93 -0.34 0.75 16 42 H 0.06 1.11 4.05 -51.93 -0.21 0.90 16 43 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 44 H 0.12 1.96 6.38 -51.93 -0.33 1.63 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -32.73 371.70 -6.25 -38.97 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.12 Total: -0.58 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.69 Total: 6.29 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.61 Total: -51.00 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.63 Total: -14.76 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.73 -6.25 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187359296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.350 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds