Wall clock time and date at job start Tue Mar 31 2020 12:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21356 * 120.00269 * 359.97438 * 13 12 2 15 15 C 1.49327 * 119.99979 * 179.97438 * 13 12 2 16 16 O 1.21410 * 120.00014 * 359.97438 * 15 13 12 17 17 N 1.34779 * 120.00370 * 180.02562 * 15 13 12 18 18 C 1.40477 * 120.00034 * 180.02562 * 17 15 13 19 19 C 1.40337 * 126.11857 * 0.02562 * 18 17 15 20 20 N 1.30822 * 108.21055 * 180.02562 * 19 18 17 21 21 N 1.40055 * 108.36849 * 0.02562 * 20 19 18 22 22 C 1.46496 * 125.99829 * 180.02562 * 21 20 19 23 23 H 1.09007 * 109.46733 * 24.97018 * 22 21 20 24 24 C 1.52990 * 109.47531 * 144.97233 * 22 21 20 25 25 C 1.53003 * 109.46935 * 264.97470 * 22 21 20 26 26 C 1.52998 * 117.49942 * 128.61864 * 25 22 21 27 27 C 1.52989 * 60.00178 * 252.51109 * 26 25 22 28 28 C 1.35227 * 108.00815 * 359.73159 * 21 20 19 29 29 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 30 30 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 31 31 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 32 32 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 33 33 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 34 34 H 0.96998 * 119.99651 * 0.02562 * 17 15 13 35 35 H 1.07998 * 125.89135 * 0.02562 * 19 18 17 36 36 H 1.08996 * 109.47458 * 180.02562 * 24 22 21 37 37 H 1.09003 * 109.47375 * 300.00309 * 24 22 21 38 38 H 1.09000 * 109.47428 * 59.99749 * 24 22 21 39 39 H 1.08997 * 115.54819 * 274.32327 * 25 22 21 40 40 H 1.09000 * 117.49927 * 0.02562 * 26 25 22 41 41 H 1.08998 * 117.49862 * 145.01638 * 26 25 22 42 42 H 1.09009 * 117.50037 * 252.51205 * 27 26 25 43 43 H 1.09004 * 117.50389 * 107.49148 * 27 26 25 44 44 H 1.08005 * 126.18264 * 180.26253 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8580 1.1593 -2.4117 15 6 2.6452 -0.7218 -3.5763 16 8 2.9348 -1.8996 -3.5217 17 7 2.7745 -0.0493 -4.7372 18 6 3.2427 -0.7115 -5.8842 19 6 3.6106 -2.0633 -5.9667 20 7 3.9933 -2.3087 -7.1934 21 7 3.8841 -1.1255 -7.9348 22 6 4.2125 -0.9649 -9.3534 23 1 4.1279 -1.9279 -9.8572 24 6 3.2429 0.0315 -9.9918 25 6 5.6440 -0.4423 -9.4895 26 6 6.5873 -1.2013 -10.4249 27 6 6.7683 -1.3025 -8.9091 28 6 3.4161 -0.1589 -7.1131 29 1 -0.3634 -1.0201 -0.1234 30 1 -0.3633 0.4033 0.9453 31 1 -0.3633 0.6171 -0.8218 32 1 1.9020 -1.9133 3.4363 33 1 2.2490 -1.6317 -1.1527 34 1 2.5442 0.8919 -4.7806 35 1 3.5825 -2.7776 -5.1572 36 1 3.4870 0.1506 -11.0474 37 1 2.2230 -0.3408 -9.8949 38 1 3.3275 0.9944 -9.4881 39 1 5.7568 0.6402 -9.4305 40 1 6.1880 -2.0728 -10.9437 41 1 7.3208 -0.6181 -10.9816 42 1 7.6210 -0.7858 -8.4684 43 1 6.4882 -2.2407 -8.4302 44 1 3.2183 0.8677 -7.3841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190128429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:02 Heat of formation + Delta-G solvation = 36.027539 kcal Electronic energy + Delta-G solvation = -26158.087628 eV Core-core repulsion = 22306.452446 eV Total energy + Delta-G solvation = -3851.635182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64776 -40.15708 -38.43216 -37.91501 -35.48124 -34.67903 -33.69442 -32.47768 -30.00909 -29.87803 -29.09995 -25.38253 -24.85676 -24.11712 -22.77933 -22.28283 -21.66168 -20.47155 -20.20301 -19.59004 -18.43016 -17.77594 -17.10587 -16.30423 -16.12920 -15.73270 -15.58142 -15.25805 -14.98900 -14.47508 -14.33828 -13.91830 -13.50980 -13.27731 -13.26324 -13.06637 -12.86303 -12.73449 -12.34302 -12.25514 -11.99556 -11.78141 -11.73929 -11.44317 -11.18255 -10.97367 -10.89638 -10.82858 -10.66160 -10.53967 -10.15892 -9.88783 -9.53280 -9.22162 -9.19309 -8.40402 -8.33109 -7.85173 -6.63638 -4.24684 1.41505 1.89263 2.06054 2.73498 2.79581 3.37402 3.40585 3.43009 3.58491 3.66536 3.89644 4.09406 4.25459 4.41100 4.44043 4.47778 4.56848 4.69574 4.79265 4.89026 5.00505 5.06730 5.08010 5.20565 5.28604 5.40107 5.45151 5.47237 5.54959 5.67026 5.76603 6.02560 6.30094 6.46065 6.57418 6.69786 6.80940 6.82479 7.01147 7.22637 7.24358 7.51800 7.58488 7.90598 8.21549 8.28755 8.51115 8.77623 9.41462 10.75345 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.002261 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.367145 B =12379.598704 C =12577.568097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.045 0.955 4 C -0.628 4.628 5 H 0.066 0.934 6 C 0.046 3.954 7 N -0.886 5.886 8 Si 1.034 2.966 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.662 5.662 13 C 0.498 3.502 14 O -0.540 6.540 15 C 0.509 3.491 16 O -0.513 6.513 17 N -0.619 5.619 18 C 0.000 4.000 19 C 0.053 3.947 20 N -0.287 5.287 21 N -0.359 5.359 22 C 0.195 3.805 23 H 0.102 0.898 24 C -0.161 4.161 25 C -0.179 4.179 26 C -0.166 4.166 27 C -0.166 4.166 28 C 0.025 3.975 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.272 0.728 33 H 0.407 0.593 34 H 0.421 0.579 35 H 0.206 0.794 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 2.594 -28.739 29.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.139 3.861 3 H 0.063 0.937 4 C -0.665 4.665 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.518 5.518 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.310 5.310 13 C 0.277 3.723 14 O -0.419 6.419 15 C 0.291 3.709 16 O -0.387 6.387 17 N -0.265 5.265 18 C -0.105 4.105 19 C -0.134 4.134 20 N -0.108 5.108 21 N -0.143 5.143 22 C 0.093 3.907 23 H 0.120 0.880 24 C -0.219 4.219 25 C -0.198 4.198 26 C -0.204 4.204 27 C -0.203 4.203 28 C -0.123 4.123 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.242 0.758 34 H 0.258 0.742 35 H 0.223 0.777 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.024 2.889 -28.426 29.011 hybrid contribution 0.023 -0.484 -0.544 0.729 sum 5.047 2.405 -28.970 29.505 Atomic orbital electron populations 1.22443 0.98324 1.00362 1.00473 1.19196 0.90930 0.94250 0.81741 0.93711 1.21994 1.42381 1.11446 0.90686 0.91612 1.25652 0.92948 1.05959 0.91624 1.70860 1.42540 1.06585 1.31810 0.84184 0.77737 0.75611 0.76421 1.20756 1.20588 1.19911 1.46236 1.61344 1.14725 1.08743 1.19705 0.80817 0.87199 0.84583 1.90711 1.51020 1.15292 1.84846 1.20651 0.78774 0.86981 0.84456 1.90622 1.47929 1.15608 1.84571 1.42458 1.63152 1.14282 1.06648 1.17755 1.11819 0.93646 0.87293 1.24539 0.98368 0.95310 0.95140 1.77376 1.23846 1.05241 1.04327 1.48370 1.50564 1.06549 1.08855 1.20767 0.92853 1.00867 0.76186 0.87951 1.22159 0.99125 0.98941 1.01719 1.22723 0.90818 0.98902 1.07337 1.23003 1.01778 1.02296 0.93318 1.22947 0.99431 1.02188 0.95755 1.21678 1.04689 0.96194 0.89777 0.93439 0.91843 0.95021 0.91781 0.75776 0.74209 0.77730 0.89810 0.91229 0.91344 0.87112 0.88446 0.88359 0.88666 0.87916 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.20 37.16 0.34 -3.14 16 2 C 0.24 5.73 2.16 -69.09 -0.15 5.58 16 3 H 0.05 1.12 6.15 -51.93 -0.32 0.80 16 4 C -0.63 -16.86 8.95 -34.44 -0.31 -17.17 16 5 H 0.07 1.87 7.96 -52.48 -0.42 1.45 16 6 C 0.05 1.28 5.19 -17.82 -0.09 1.19 16 7 N -0.89 -26.00 13.70 55.43 0.76 -25.24 16 8 Si 1.03 24.40 26.44 -169.99 -4.50 19.91 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.03 6.14 56.52 0.35 -5.68 16 12 N -0.66 -13.77 5.06 -55.41 -0.28 -14.05 16 13 C 0.50 9.53 7.85 -11.64 -0.09 9.44 16 14 O -0.54 -11.10 16.14 5.49 0.09 -11.01 16 15 C 0.51 8.42 7.86 -11.64 -0.09 8.32 16 16 O -0.51 -9.09 13.63 5.44 0.07 -9.01 16 17 N -0.62 -8.32 5.46 -10.48 -0.06 -8.38 16 18 C 0.00 -0.01 6.90 -83.96 -0.58 -0.59 16 19 C 0.05 0.76 10.84 -17.19 -0.19 0.57 16 20 N -0.29 -3.78 12.56 30.72 0.39 -3.39 16 21 N -0.36 -3.66 3.41 -54.65 -0.19 -3.85 16 22 C 0.19 1.35 3.51 -67.94 -0.24 1.12 16 23 H 0.10 0.72 7.90 -51.92 -0.41 0.31 16 24 C -0.16 -0.74 8.81 37.15 0.33 -0.41 16 25 C -0.18 -1.14 5.36 -90.62 -0.49 -1.63 16 26 C -0.17 -0.92 10.18 -26.74 -0.27 -1.19 16 27 C -0.17 -1.29 10.12 -26.74 -0.27 -1.56 16 28 C 0.02 0.25 10.62 -16.91 -0.18 0.07 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.43 5.47 -51.93 -0.28 1.15 16 31 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 33 H 0.41 8.11 7.99 -40.82 -0.33 7.78 16 34 H 0.42 4.85 8.29 -40.82 -0.34 4.51 16 35 H 0.21 3.10 5.92 -52.49 -0.31 2.79 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.27 7.15 -51.93 -0.37 -0.10 16 39 H 0.11 0.64 8.11 -51.93 -0.42 0.21 16 40 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.17 1.14 7.26 -52.48 -0.38 0.75 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -31.50 370.30 -6.57 -38.07 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.16 Total: 10.77 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.28 Total: 0.61 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.62 Total: -54.91 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.16 Total: -20.02 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.50 Total: 19.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.50 -6.57 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190128429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.098 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds