Wall clock time and date at job start Tue Mar 31 2020 12:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21365 * 120.00483 * 0.02562 * 13 12 2 15 15 C 1.49328 * 119.99930 * 180.02562 * 13 12 2 16 16 O 1.21401 * 119.99942 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99930 * 180.02562 * 15 13 12 18 18 C 1.40492 * 119.99641 * 180.02562 * 17 15 13 19 19 C 1.40332 * 126.11744 * 0.02562 * 18 17 15 20 20 N 1.30820 * 108.21273 * 179.97438 * 19 18 17 21 21 N 1.40055 * 108.36526 * 0.02562 * 20 19 18 22 22 C 1.46501 * 125.99892 * 180.02562 * 21 20 19 23 23 H 1.09006 * 109.46715 * 24.97240 * 22 21 20 24 24 C 1.52997 * 109.46994 * 144.97143 * 22 21 20 25 25 C 1.52995 * 109.47108 * 264.97378 * 22 21 20 26 26 C 1.53000 * 117.49801 * 128.61971 * 25 22 21 27 27 C 1.52997 * 59.99979 * 252.50920 * 26 25 22 28 28 C 1.35235 * 108.00699 * 359.73110 * 21 20 19 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 34 34 H 0.96993 * 120.00399 * 0.02562 * 17 15 13 35 35 H 1.08001 * 125.89160 * 0.02562 * 19 18 17 36 36 H 1.09000 * 109.47726 * 299.99810 * 24 22 21 37 37 H 1.08992 * 109.47218 * 60.00548 * 24 22 21 38 38 H 1.09006 * 109.46768 * 180.02562 * 24 22 21 39 39 H 1.09002 * 115.55018 * 274.32690 * 25 22 21 40 40 H 1.09005 * 117.49566 * 359.97438 * 26 25 22 41 41 H 1.09001 * 117.50038 * 145.01906 * 26 25 22 42 42 H 1.08995 * 117.49954 * 252.50711 * 27 26 25 43 43 H 1.09002 * 117.50054 * 107.49035 * 27 26 25 44 44 H 1.07997 * 126.17534 * 180.26499 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8579 1.1594 2.4118 15 6 2.6453 -0.7218 3.5763 16 8 2.9349 -1.8995 3.5216 17 7 2.7735 -0.0495 4.7374 18 6 3.2428 -0.7115 5.8842 19 6 3.6137 -2.0625 5.9659 20 7 3.9965 -2.3079 7.1926 21 7 3.8832 -1.1258 7.9351 22 6 4.2113 -0.9653 9.3538 23 1 4.9446 -1.7176 9.6445 24 6 4.7923 0.4305 9.5881 25 6 2.9438 -1.1376 10.1931 26 6 2.9981 -2.1256 11.3601 27 6 2.2094 -2.4764 10.0969 28 6 3.4240 -0.1569 7.1110 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1611 -3.4845 33 1 2.2490 -1.6316 1.1527 34 1 2.5417 0.8913 4.7812 35 1 3.5883 -2.7761 5.1557 36 1 5.6954 0.5534 8.9903 37 1 4.0591 1.1828 9.2975 38 1 5.0368 0.5498 10.6437 39 1 2.3389 -0.2399 10.3210 40 1 3.9369 -2.6531 11.5296 41 1 2.4291 -1.8779 12.2562 42 1 1.1215 -2.4595 10.1619 43 1 2.6293 -3.2344 9.4356 44 1 3.2334 0.8715 7.3802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190128446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:05 Heat of formation + Delta-G solvation = 35.912774 kcal Electronic energy + Delta-G solvation = -26088.212086 eV Core-core repulsion = 22236.571928 eV Total energy + Delta-G solvation = -3851.640158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59058 -40.03658 -38.34097 -37.81443 -35.33566 -34.57835 -33.64803 -32.38674 -29.95972 -29.34236 -28.88480 -25.36628 -25.12301 -24.09062 -22.75685 -22.23551 -21.67917 -20.44886 -20.27915 -19.41837 -18.25092 -17.66069 -16.29954 -16.17153 -15.97795 -15.70910 -15.38135 -15.21491 -15.00902 -14.44786 -14.31484 -14.15818 -13.45119 -13.24833 -13.18734 -13.01572 -12.81790 -12.46462 -12.30349 -11.97179 -11.79060 -11.72989 -11.20103 -11.05639 -10.98788 -10.93050 -10.84556 -10.79846 -10.76242 -10.63272 -10.35614 -10.25978 -9.48461 -9.14115 -9.02999 -8.60766 -8.11639 -7.78675 -6.16089 -4.25544 1.49742 1.97479 2.11248 2.84087 2.86759 3.26733 3.31258 3.33876 3.43345 3.79962 3.93296 4.17555 4.28632 4.36666 4.47585 4.50718 4.61053 4.73307 4.82791 4.95861 5.09881 5.14918 5.17691 5.22507 5.32954 5.44428 5.48501 5.52278 5.57878 5.70175 5.79043 6.09758 6.73546 6.75378 6.86195 6.86895 7.03733 7.16923 7.25408 7.43074 7.60718 7.65018 7.80743 8.02446 8.06764 8.47203 8.63652 8.87285 9.41324 10.89878 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.002157 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.042714 B =12975.189740 C =13147.071760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.668 5.668 13 C 0.497 3.503 14 O -0.538 6.538 15 C 0.509 3.491 16 O -0.515 6.515 17 N -0.620 5.620 18 C 0.001 3.999 19 C 0.053 3.947 20 N -0.287 5.287 21 N -0.360 5.360 22 C 0.195 3.805 23 H 0.102 0.898 24 C -0.161 4.161 25 C -0.178 4.178 26 C -0.167 4.167 27 C -0.166 4.166 28 C 0.023 3.977 29 H 0.016 0.984 30 H 0.094 0.906 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.421 0.579 35 H 0.207 0.793 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -1.549 26.236 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.317 5.317 13 C 0.276 3.724 14 O -0.417 6.417 15 C 0.291 3.709 16 O -0.390 6.390 17 N -0.266 5.266 18 C -0.104 4.104 19 C -0.134 4.134 20 N -0.109 5.109 21 N -0.144 5.144 22 C 0.094 3.906 23 H 0.120 0.880 24 C -0.220 4.220 25 C -0.197 4.197 26 C -0.204 4.204 27 C -0.203 4.203 28 C -0.125 4.125 29 H 0.035 0.965 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.258 0.742 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.118 -2.279 26.911 27.488 hybrid contribution -0.135 0.344 -1.392 1.440 sum 4.983 -1.936 25.519 26.073 Atomic orbital electron populations 1.22099 0.97853 0.99567 1.01189 1.18965 0.91432 0.94126 0.79369 0.92818 1.21161 1.32791 1.13482 0.90031 0.91768 1.24883 0.94707 0.94950 0.99095 1.69884 1.35665 1.22379 1.24150 0.86446 0.79220 0.79614 0.81487 1.21124 1.20090 1.20048 1.46483 1.61329 1.14554 1.09305 1.19636 0.81050 0.87219 0.84519 1.90723 1.50923 1.15299 1.84746 1.20781 0.78590 0.86981 0.84525 1.90603 1.48079 1.15660 1.84643 1.42491 1.63125 1.14369 1.06664 1.17767 1.11576 0.93578 0.87447 1.24539 0.98389 0.95340 0.95105 1.77365 1.23961 1.05345 1.04207 1.48358 1.51117 1.06547 1.08396 1.20757 0.95353 0.99630 0.74908 0.87983 1.22160 1.01796 0.94485 1.03512 1.22725 0.99613 0.95566 1.01840 1.23006 1.02810 1.02119 0.92489 1.22944 0.99160 0.97856 1.00369 1.21674 1.04827 0.96132 0.89820 0.96470 0.88744 0.95092 0.92419 0.76282 0.74206 0.77717 0.91214 0.91335 0.89845 0.87118 0.88456 0.88375 0.88690 0.87915 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.57 2.56 -69.09 -0.18 6.39 16 3 H 0.05 1.51 7.58 -51.92 -0.39 1.12 16 4 C -0.54 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.41 11.32 55.43 0.63 -23.78 16 8 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.67 -14.28 5.06 -55.40 -0.28 -14.56 16 13 C 0.50 9.92 7.85 -11.64 -0.09 9.83 16 14 O -0.54 -11.77 16.14 5.48 0.09 -11.68 16 15 C 0.51 8.67 7.86 -11.64 -0.09 8.58 16 16 O -0.52 -9.26 13.63 5.45 0.07 -9.19 16 17 N -0.62 -8.67 5.46 -10.48 -0.06 -8.73 16 18 C 0.00 0.01 6.90 -83.96 -0.58 -0.57 16 19 C 0.05 0.77 10.84 -17.20 -0.19 0.58 16 20 N -0.29 -3.85 12.56 30.72 0.39 -3.47 16 21 N -0.36 -3.77 3.41 -54.66 -0.19 -3.95 16 22 C 0.20 1.40 3.51 -67.93 -0.24 1.17 16 23 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16 24 C -0.16 -0.78 8.81 37.16 0.33 -0.46 16 25 C -0.18 -1.17 5.36 -90.62 -0.49 -1.66 16 26 C -0.17 -0.94 10.18 -26.73 -0.27 -1.21 16 27 C -0.17 -1.30 10.12 -26.73 -0.27 -1.57 16 28 C 0.02 0.24 10.62 -16.91 -0.18 0.06 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.40 8.02 8.01 -40.82 -0.33 7.69 16 34 H 0.42 5.14 8.29 -40.82 -0.34 4.80 16 35 H 0.21 3.14 5.92 -52.49 -0.31 2.83 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.29 7.15 -51.93 -0.37 -0.08 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.11 0.65 8.11 -51.93 -0.42 0.23 16 40 H 0.10 0.49 8.05 -51.93 -0.42 0.08 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.17 1.21 7.26 -52.49 -0.38 0.83 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -30.66 373.72 -7.22 -37.88 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.19 Total: 11.17 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.30 Total: 5.14 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.49 Total: -54.49 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.16 Total: -20.87 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.66 -7.22 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190128446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.789 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds