Wall clock time and date at job start Tue Mar 31 2020 12:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46861 * 2 1 4 4 C 1.52994 * 109.46758 * 240.00282 * 2 1 3 5 5 C 1.53007 * 117.49780 * 128.62150 * 4 2 1 6 6 C 1.53005 * 60.00240 * 252.50966 * 5 4 2 7 7 N 1.46501 * 109.46984 * 120.00415 * 2 1 3 8 8 C 1.35221 * 125.99375 * 35.32797 * 7 2 1 9 9 C 1.35853 * 107.64090 * 180.12110 * 8 7 2 10 10 N 1.40482 * 126.11724 * 179.83758 * 9 8 7 11 11 C 1.34774 * 120.00218 * 179.71536 * 10 9 8 12 12 O 1.21409 * 120.00064 * 0.02562 * 11 10 9 13 13 C 1.49324 * 120.00266 * 179.97438 * 11 10 9 14 14 O 1.21362 * 119.99755 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00266 * 180.02562 * 13 11 10 16 16 C 1.46503 * 120.00000 * 179.97438 * 15 13 11 17 17 H 1.08994 * 109.47185 * 325.00421 * 16 15 13 18 18 C 1.53003 * 109.46991 * 85.00701 * 16 15 13 19 19 C 1.50702 * 109.47119 * 205.00085 * 16 15 13 20 20 H 1.08007 * 119.99981 * 354.48131 * 19 16 15 21 21 C 1.37872 * 120.00181 * 174.48618 * 19 16 15 22 22 N 1.31510 * 120.00028 * 164.58493 * 21 19 16 23 23 Si 1.86797 * 119.99894 * 344.86064 * 21 19 16 24 24 H 1.48501 * 109.47054 * 269.72685 * 23 21 19 25 25 H 1.48506 * 109.47355 * 29.72399 * 23 21 19 26 26 H 1.48500 * 109.47516 * 149.72369 * 23 21 19 27 27 C 1.40347 * 107.77091 * 359.57663 * 9 8 7 28 28 N 1.30826 * 108.20674 * 0.26394 * 27 9 8 29 29 H 1.08998 * 109.47149 * 59.99580 * 1 2 3 30 30 H 1.08990 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46720 * 299.99543 * 1 2 3 32 32 H 1.09002 * 115.55266 * 274.32745 * 4 2 1 33 33 H 1.08997 * 117.49580 * 359.97438 * 5 4 2 34 34 H 1.08998 * 117.49982 * 145.02277 * 5 4 2 35 35 H 1.08994 * 117.49524 * 252.51436 * 6 5 4 36 36 H 1.09000 * 117.51933 * 107.47689 * 6 5 4 37 37 H 1.07997 * 126.18480 * 359.96103 * 8 7 2 38 38 H 0.97002 * 119.99775 * 359.71814 * 10 9 8 39 39 H 0.97002 * 120.00007 * 0.02562 * 15 13 11 40 40 H 1.09005 * 109.46269 * 293.54281 * 18 16 15 41 41 H 1.08992 * 109.47288 * 53.53833 * 18 16 15 42 42 H 1.08997 * 109.47143 * 173.55043 * 18 16 15 43 43 H 0.96999 * 120.00545 * 355.19134 * 22 21 19 44 44 H 1.07996 * 125.89689 * 180.26156 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.0741 0.0053 -2.1117 6 6 1.6356 -0.1493 -2.6097 7 7 2.0184 -0.6907 1.1961 8 6 1.4417 -1.7620 1.7863 9 6 2.1990 -2.0959 2.8636 10 7 1.9498 -3.1522 3.7556 11 6 2.7899 -3.3772 4.7851 12 8 3.7619 -2.6667 4.9420 13 6 2.5248 -4.4996 5.7336 14 8 1.5525 -5.2090 5.5776 15 7 3.3646 -4.7243 6.7635 16 6 3.1041 -5.8252 7.6943 17 1 2.0287 -5.9395 7.8301 18 6 3.6872 -7.1212 7.1275 19 6 3.7488 -5.5232 9.0226 20 1 4.3716 -4.6478 9.1340 21 6 3.5437 -6.3643 10.0956 22 7 4.3251 -6.2868 11.1506 23 14 2.1609 -7.6192 10.0477 24 1 0.9256 -7.0162 10.6097 25 1 1.9151 -8.0317 8.6424 26 1 2.5423 -8.8073 10.8527 27 6 3.2782 -1.2006 2.9226 28 7 3.1682 -0.3615 1.9249 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.1267 -1.8044 -1.1643 33 1 3.3908 0.9972 -1.7893 34 1 3.8415 -0.5999 -2.5943 35 1 1.4568 -0.8563 -3.4197 36 1 1.0060 0.7404 -2.6145 37 1 0.5404 -2.2605 1.4615 38 1 1.1731 -3.7196 3.6304 39 1 4.1411 -4.1567 6.8888 40 1 3.1423 -7.4007 6.2257 41 1 4.7390 -6.9706 6.8844 42 1 3.5955 -7.9154 7.8683 43 1 5.0877 -5.6874 11.1464 44 1 4.0638 -1.2037 3.6636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190128464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:08 Heat of formation + Delta-G solvation = 37.848462 kcal Electronic energy + Delta-G solvation = -26038.269484 eV Core-core repulsion = 22186.713264 eV Total energy + Delta-G solvation = -3851.556221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65812 -40.16563 -38.51262 -38.00001 -35.50807 -34.71122 -33.62017 -32.46696 -29.97604 -29.91879 -29.08975 -25.51601 -24.90693 -24.20392 -22.80334 -22.23129 -21.63997 -20.44304 -20.19729 -19.60897 -18.43855 -17.94332 -17.15897 -16.38073 -16.04027 -15.73848 -15.48673 -15.40364 -14.94670 -14.41836 -14.28731 -13.92928 -13.67340 -13.47398 -13.22165 -13.08461 -12.87513 -12.74069 -12.53875 -12.25313 -11.96406 -11.78650 -11.71045 -11.46876 -11.19818 -11.05749 -10.97298 -10.82748 -10.59307 -10.57850 -10.19365 -9.70694 -9.56163 -9.20818 -9.09190 -8.47363 -8.36448 -7.87231 -6.60766 -4.26263 1.39440 1.87764 2.06346 2.73320 2.78002 3.23010 3.38225 3.41921 3.55775 3.65481 3.97660 4.08695 4.22965 4.38032 4.40679 4.50943 4.52576 4.60353 4.77943 4.86513 4.98614 5.04430 5.13148 5.14273 5.27739 5.36987 5.41243 5.45302 5.54393 5.60213 5.66671 6.01049 6.29347 6.43596 6.56334 6.68166 6.79100 6.81435 6.99701 7.21375 7.22111 7.50363 7.56726 7.89037 8.20337 8.28111 8.50471 8.77018 9.42858 10.79213 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035361 B = 0.002181 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.642212 B =12836.961511 C =13098.181229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.197 3.803 3 H 0.103 0.897 4 C -0.173 4.173 5 C -0.171 4.171 6 C -0.168 4.168 7 N -0.361 5.361 8 C 0.023 3.977 9 C 0.001 3.999 10 N -0.619 5.619 11 C 0.509 3.491 12 O -0.512 6.512 13 C 0.498 3.502 14 O -0.539 6.539 15 N -0.662 5.662 16 C 0.239 3.761 17 H 0.048 0.952 18 C -0.156 4.156 19 C -0.619 4.619 20 H 0.065 0.935 21 C 0.041 3.959 22 N -0.896 5.896 23 Si 1.039 2.961 24 H -0.283 1.283 25 H -0.267 1.267 26 H -0.283 1.283 27 C 0.053 3.947 28 N -0.284 5.284 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.176 0.824 38 H 0.421 0.579 39 H 0.407 0.593 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.271 0.729 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 11.371 -26.596 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.095 3.905 3 H 0.121 0.879 4 C -0.192 4.192 5 C -0.208 4.208 6 C -0.206 4.206 7 N -0.146 5.146 8 C -0.125 4.125 9 C -0.104 4.104 10 N -0.266 5.266 11 C 0.291 3.709 12 O -0.387 6.387 13 C 0.277 3.723 14 O -0.418 6.418 15 N -0.311 5.311 16 C 0.137 3.863 17 H 0.066 0.934 18 C -0.215 4.215 19 C -0.657 4.657 20 H 0.083 0.917 21 C -0.166 4.166 22 N -0.528 5.528 23 Si 0.866 3.134 24 H -0.209 1.209 25 H -0.192 1.192 26 H -0.209 1.209 27 C -0.134 4.134 28 N -0.105 5.105 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.193 0.807 38 H 0.258 0.742 39 H 0.242 0.758 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.212 11.232 -26.281 29.737 hybrid contribution 0.462 0.407 -0.478 0.779 sum -7.750 11.638 -26.760 30.193 Atomic orbital electron populations 1.22167 0.92518 1.03705 1.03659 1.20731 0.94389 0.95905 0.79498 0.87933 1.22685 1.05456 1.00017 0.91028 1.23051 0.92548 1.02143 1.03043 1.22988 0.98412 1.03198 0.96007 1.48298 1.19811 1.23834 1.22608 1.21690 1.01041 0.93898 0.95899 1.17765 1.00120 0.96516 0.96005 1.42460 1.28425 1.30103 1.25562 1.20655 0.82766 0.85669 0.81765 1.90624 1.27998 1.47543 1.72521 1.19696 0.84679 0.84781 0.83127 1.90715 1.28729 1.48739 1.73639 1.46232 1.26465 1.33029 1.25339 1.19280 0.97532 0.82108 0.87430 0.93444 1.22462 1.00183 0.99285 0.99535 1.22083 1.35353 1.13514 0.94767 0.91677 1.25700 1.00296 0.98576 0.92046 1.70810 1.14582 1.36337 1.31083 0.84183 0.75968 0.76629 0.76668 1.20940 1.19190 1.20867 1.24572 0.99107 0.92212 0.97472 1.77416 1.02402 1.23613 1.07101 0.89903 0.91256 0.91238 0.87211 0.88338 0.88531 0.88307 0.88349 0.80711 0.74178 0.75784 0.94957 0.93440 0.92016 0.91881 0.77648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 8.68 37.16 0.32 -0.44 16 2 C 0.20 1.39 3.55 -67.93 -0.24 1.15 16 3 H 0.10 0.73 7.90 -51.93 -0.41 0.32 16 4 C -0.17 -1.11 5.45 -90.61 -0.49 -1.60 16 5 C -0.17 -1.04 10.18 -26.72 -0.27 -1.31 16 6 C -0.17 -0.76 9.74 -26.72 -0.26 -1.02 16 7 N -0.36 -3.76 3.53 -54.66 -0.19 -3.96 16 8 C 0.02 0.23 10.63 -16.91 -0.18 0.05 16 9 C 0.00 0.01 6.90 -83.95 -0.58 -0.57 16 10 N -0.62 -8.30 5.46 -10.48 -0.06 -8.35 16 11 C 0.51 8.39 7.86 -11.65 -0.09 8.30 16 12 O -0.51 -9.07 13.63 5.45 0.07 -8.99 16 13 C 0.50 9.50 7.85 -11.65 -0.09 9.41 16 14 O -0.54 -11.05 16.14 5.49 0.09 -10.96 16 15 N -0.66 -13.73 5.06 -55.40 -0.28 -14.01 16 16 C 0.24 5.65 2.11 -69.08 -0.15 5.50 16 17 H 0.05 1.18 6.21 -51.93 -0.32 0.86 16 18 C -0.16 -3.42 8.76 37.16 0.33 -3.10 16 19 C -0.62 -16.63 9.02 -34.44 -0.31 -16.94 16 20 H 0.07 1.85 7.96 -52.48 -0.42 1.43 16 21 C 0.04 1.13 5.33 -17.82 -0.09 1.04 16 22 N -0.90 -26.47 13.70 55.43 0.76 -25.72 16 23 Si 1.04 24.35 26.17 -169.99 -4.45 19.90 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -5.82 5.53 56.52 0.31 -5.50 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.05 0.77 10.84 -17.19 -0.19 0.58 16 28 N -0.28 -3.86 12.56 30.72 0.39 -3.47 16 29 H 0.08 0.25 7.29 -51.93 -0.38 -0.13 16 30 H 0.07 0.29 7.16 -51.93 -0.37 -0.08 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.33 7.61 -51.93 -0.39 -0.07 16 37 H 0.18 1.13 7.27 -52.49 -0.38 0.75 16 38 H 0.42 4.82 8.29 -40.82 -0.34 4.48 16 39 H 0.41 8.08 7.99 -40.82 -0.33 7.76 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.36 5.06 -51.93 -0.26 1.10 16 43 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 44 H 0.21 3.13 5.92 -52.49 -0.31 2.82 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -31.95 367.17 -6.55 -38.50 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.11 Total: 10.50 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.30 Total: 1.04 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.61 Total: -55.51 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.16 Total: -19.96 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.45 Total: 19.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.95 -6.55 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190128464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.345 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds