Wall clock time and date at job start Tue Mar 31 2020 12:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21365 * 120.00483 * 0.02562 * 13 12 2 15 15 C 1.49328 * 119.99930 * 180.02562 * 13 12 2 16 16 O 1.21401 * 119.99942 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99930 * 180.02562 * 15 13 12 18 18 C 1.40492 * 119.99641 * 180.02562 * 17 15 13 19 19 C 1.40331 * 126.11582 * 359.69203 * 18 17 15 20 20 N 1.30824 * 108.20982 * 179.87751 * 19 18 17 21 21 N 1.40054 * 108.36490 * 0.37979 * 20 19 18 22 22 C 1.46501 * 125.99616 * 179.73316 * 21 20 19 23 23 H 1.08995 * 109.46946 * 335.02533 * 22 21 20 24 24 C 1.53005 * 109.46876 * 215.02576 * 22 21 20 25 25 C 1.52991 * 109.47010 * 95.02899 * 22 21 20 26 26 C 1.53010 * 117.49708 * 248.62075 * 25 22 21 27 27 C 1.52997 * 59.99967 * 252.51012 * 26 25 22 28 28 C 1.35227 * 108.00887 * 359.75610 * 21 20 19 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 34 34 H 0.96993 * 120.00399 * 0.02562 * 17 15 13 35 35 H 1.08003 * 125.89952 * 0.02562 * 19 18 17 36 36 H 1.08999 * 109.46577 * 179.97438 * 24 22 21 37 37 H 1.08995 * 109.47298 * 299.99741 * 24 22 21 38 38 H 1.09000 * 109.47171 * 60.00661 * 24 22 21 39 39 H 1.08997 * 115.55349 * 34.32461 * 25 22 21 40 40 H 1.09001 * 117.49510 * 359.97438 * 26 25 22 41 41 H 1.08994 * 117.49574 * 145.01844 * 26 25 22 42 42 H 1.08997 * 117.49974 * 252.51228 * 27 26 25 43 43 H 1.09004 * 117.52080 * 107.47763 * 27 26 25 44 44 H 1.08002 * 126.17979 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8579 1.1594 2.4118 15 6 2.6453 -0.7218 3.5763 16 8 2.9349 -1.8995 3.5216 17 7 2.7735 -0.0495 4.7374 18 6 3.2428 -0.7115 5.8842 19 6 3.6075 -2.0640 5.9675 20 7 3.9944 -2.3084 7.1931 21 7 3.8824 -1.1260 7.9352 22 6 4.2093 -0.9658 9.3543 23 1 4.1259 -1.9292 9.8573 24 6 3.2372 0.0286 9.9925 25 6 5.6396 -0.4406 9.4921 26 6 6.6862 -1.3878 10.0826 27 6 6.1727 -0.2056 10.9068 28 6 3.4191 -0.1581 7.1123 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1611 -3.4845 33 1 2.2490 -1.6316 1.1527 34 1 2.5417 0.8913 4.7812 35 1 3.5765 -2.7793 5.1588 36 1 3.4801 0.1473 11.0484 37 1 3.3206 0.9919 9.4895 38 1 2.2181 -0.3456 9.8944 39 1 5.9656 0.2460 8.7108 40 1 6.3555 -2.3850 10.3732 41 1 7.7009 -1.3245 9.6897 42 1 6.8496 0.6356 11.0562 43 1 5.5041 -0.4246 11.7394 44 1 3.2249 0.8694 7.3824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190128481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:11 Heat of formation + Delta-G solvation = 36.583719 kcal Electronic energy + Delta-G solvation = -25962.331812 eV Core-core repulsion = 22110.720748 eV Total energy + Delta-G solvation = -3851.611064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59933 -40.04142 -38.43219 -37.87721 -35.35066 -34.59638 -33.57230 -32.38879 -29.91928 -29.33107 -28.88086 -25.42839 -25.24362 -24.18333 -22.77132 -22.17847 -21.64800 -20.45087 -20.23413 -19.43834 -18.25681 -17.85490 -16.29646 -16.28150 -15.87514 -15.61811 -15.45473 -15.19471 -15.00161 -14.36290 -14.26761 -14.12017 -13.63801 -13.42906 -13.18731 -13.02860 -12.82267 -12.49932 -12.46551 -11.93287 -11.79273 -11.67597 -11.20548 -11.06553 -11.01968 -10.98549 -10.92389 -10.78031 -10.76286 -10.54244 -10.35719 -10.26061 -9.51165 -9.14280 -9.03548 -8.60888 -8.11907 -7.80482 -6.16182 -4.25638 1.47807 1.96402 2.11811 2.84216 2.85418 3.26497 3.26692 3.31217 3.33864 3.79290 4.02327 4.16797 4.26670 4.36002 4.42283 4.54558 4.57502 4.64203 4.81884 4.93440 5.06575 5.14641 5.16240 5.17534 5.31834 5.40665 5.45795 5.50503 5.58234 5.63442 5.70594 6.08498 6.73365 6.74002 6.84725 6.86558 7.03571 7.16206 7.25000 7.42587 7.59734 7.64522 7.80522 8.01651 8.06602 8.46867 8.63396 8.87064 9.41234 10.89783 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.002121 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.046842 B =13200.964878 C =13553.451605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.905 3.095 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.668 5.668 13 C 0.497 3.503 14 O -0.538 6.538 15 C 0.509 3.491 16 O -0.515 6.515 17 N -0.620 5.620 18 C 0.002 3.998 19 C 0.053 3.947 20 N -0.285 5.285 21 N -0.362 5.362 22 C 0.197 3.803 23 H 0.102 0.898 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.171 4.171 27 C -0.169 4.169 28 C 0.021 3.979 29 H 0.030 0.970 30 H 0.016 0.984 31 H 0.094 0.906 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.421 0.579 35 H 0.207 0.793 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.397 -0.749 26.196 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.317 5.317 13 C 0.276 3.724 14 O -0.417 6.417 15 C 0.291 3.709 16 O -0.389 6.389 17 N -0.267 5.267 18 C -0.103 4.103 19 C -0.134 4.134 20 N -0.106 5.106 21 N -0.146 5.146 22 C 0.095 3.905 23 H 0.120 0.880 24 C -0.220 4.220 25 C -0.192 4.192 26 C -0.208 4.208 27 C -0.206 4.206 28 C -0.127 4.127 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.258 0.742 35 H 0.224 0.776 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.739 -1.486 26.873 27.745 hybrid contribution 0.028 0.331 -1.451 1.489 sum 6.767 -1.156 25.422 26.333 Atomic orbital electron populations 1.22099 0.97844 0.99571 1.01193 1.18967 0.91439 0.94127 0.79364 0.92814 1.21160 1.32795 1.13484 0.90030 0.91768 1.24882 0.94706 0.94950 0.99094 1.69884 1.35662 1.22377 1.24152 0.86446 0.79220 0.79616 0.81486 1.21123 1.20092 1.20046 1.46484 1.61317 1.14558 1.09300 1.19629 0.81059 0.87218 0.84510 1.90724 1.50924 1.15290 1.84739 1.20791 0.78569 0.86983 0.84528 1.90605 1.48034 1.15661 1.84642 1.42494 1.63152 1.14376 1.06641 1.17775 1.11524 0.93563 0.87394 1.24570 0.98303 0.95348 0.95163 1.77403 1.23586 1.05292 1.04345 1.48283 1.51010 1.06645 1.08687 1.20719 0.92805 1.00700 0.76265 0.87982 1.22166 0.99013 0.99192 1.01674 1.22686 0.94041 1.04272 0.98166 1.23048 0.99017 0.95369 1.03360 1.22984 1.03554 1.00771 0.93313 1.21691 1.05019 0.96187 0.89764 0.95089 0.96464 0.88742 0.92417 0.76277 0.74177 0.77635 0.89934 0.91234 0.91259 0.87190 0.88355 0.88536 0.88318 0.88369 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.56 2.56 -69.09 -0.18 6.38 16 3 H 0.05 1.51 7.58 -51.92 -0.39 1.12 16 4 C -0.54 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.67 -14.27 5.06 -55.40 -0.28 -14.55 16 13 C 0.50 9.91 7.85 -11.64 -0.09 9.82 16 14 O -0.54 -11.75 16.14 5.48 0.09 -11.66 16 15 C 0.51 8.67 7.86 -11.64 -0.09 8.58 16 16 O -0.51 -9.26 13.63 5.45 0.07 -9.18 16 17 N -0.62 -8.67 5.46 -10.48 -0.06 -8.73 16 18 C 0.00 0.03 6.90 -83.96 -0.58 -0.55 16 19 C 0.05 0.78 10.84 -17.19 -0.19 0.59 16 20 N -0.29 -3.94 12.56 30.72 0.39 -3.55 16 21 N -0.36 -3.88 3.53 -54.66 -0.19 -4.07 16 22 C 0.20 1.44 3.55 -67.93 -0.24 1.20 16 23 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 24 C -0.16 -0.80 8.67 37.16 0.32 -0.48 16 25 C -0.17 -1.16 5.45 -90.62 -0.49 -1.66 16 26 C -0.17 -1.08 10.18 -26.73 -0.27 -1.36 16 27 C -0.17 -0.80 9.74 -26.73 -0.26 -1.06 16 28 C 0.02 0.22 10.63 -16.91 -0.18 0.04 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.40 8.02 8.01 -40.82 -0.33 7.69 16 34 H 0.42 5.12 8.29 -40.82 -0.34 4.79 16 35 H 0.21 3.17 5.92 -52.48 -0.31 2.86 16 36 H 0.08 0.27 7.29 -51.93 -0.38 -0.11 16 37 H 0.07 0.31 7.16 -51.93 -0.37 -0.06 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.35 7.61 -51.93 -0.39 -0.04 16 44 H 0.18 1.21 7.27 -52.49 -0.38 0.83 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -30.86 372.10 -7.19 -38.05 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.12 Total: 10.80 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.30 Total: 5.51 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.48 Total: -54.66 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.16 Total: -20.85 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.86 -7.19 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190128481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.631 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds