Wall clock time and date at job start Tue Mar 31 2020 13:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47032 * 2 1 4 4 C 1.46500 * 120.00179 * 274.82007 * 3 2 1 5 5 C 1.50706 * 109.47020 * 263.74898 * 4 3 2 6 6 H 1.08002 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00137 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99982 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00318 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46809 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47022 * 120.00101 * 9 7 5 12 12 H 1.48504 * 109.47065 * 240.00247 * 9 7 5 13 13 C 1.34775 * 119.99959 * 94.82080 * 3 2 1 14 14 O 1.21363 * 120.00029 * 354.61252 * 13 3 2 15 15 C 1.49362 * 120.00169 * 174.61579 * 13 3 2 16 16 O 1.21377 * 119.99639 * 0.24093 * 15 13 3 17 17 N 1.34770 * 119.99667 * 180.24581 * 15 13 3 18 18 C 1.39784 * 119.99427 * 184.94501 * 17 15 13 19 19 C 1.39293 * 120.87242 * 145.41342 * 18 17 15 20 20 N 1.32259 * 119.00698 * 180.02562 * 19 18 17 21 21 C 1.31802 * 120.89765 * 0.02562 * 20 19 18 22 22 C 1.50694 * 119.03182 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.46986 * 239.99686 * 22 21 20 24 24 C 1.52999 * 109.47181 * 119.99910 * 22 21 20 25 25 N 1.31811 * 121.93900 * 0.25028 * 21 20 19 26 26 C 1.32258 * 120.89228 * 359.48131 * 25 21 20 27 27 H 1.09001 * 109.46782 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47253 * 299.99602 * 1 2 3 29 29 H 1.09002 * 109.46959 * 59.99663 * 1 2 3 30 30 H 1.09005 * 109.47412 * 240.00180 * 2 1 3 31 31 H 1.08999 * 109.47374 * 120.00058 * 2 1 3 32 32 H 1.08990 * 109.47324 * 23.74700 * 4 3 2 33 33 H 1.08994 * 109.47364 * 143.75548 * 4 3 2 34 34 H 0.97001 * 120.00565 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.01158 * 4.93667 * 17 15 13 36 36 H 1.07997 * 120.50274 * 0.02562 * 19 18 17 37 37 H 1.08997 * 109.47212 * 359.97438 * 22 21 20 38 38 H 1.08998 * 109.47454 * 299.99597 * 23 22 21 39 39 H 1.09000 * 109.47247 * 60.00292 * 23 22 21 40 40 H 1.09005 * 109.46695 * 180.02562 * 23 22 21 41 41 H 1.08998 * 109.47438 * 60.00293 * 24 22 21 42 42 H 1.09002 * 109.47370 * 179.97438 * 24 22 21 43 43 H 1.09001 * 109.47245 * 299.99821 * 24 22 21 44 44 H 1.08001 * 120.49075 * 180.25544 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1619 2.1074 -1.2642 5 6 3.5889 2.0114 -1.7393 6 1 4.3160 1.4639 -1.1579 7 6 3.9661 2.6217 -2.9167 8 7 3.0806 3.2880 -3.6249 9 14 5.7347 2.5022 -3.5059 10 1 6.5263 1.7026 -2.5368 11 1 5.7697 1.8430 -4.8362 12 1 6.3138 3.8654 -3.6136 13 6 2.3354 1.9839 1.1631 14 8 2.1248 1.4189 2.2164 15 6 2.9458 3.3470 1.1558 16 8 3.1523 3.9138 0.1025 17 7 3.2674 3.9475 2.3186 18 6 3.7421 5.2623 2.3183 19 6 3.4270 6.1362 3.3562 20 7 3.8956 7.3724 3.3183 21 6 4.6496 7.7800 2.3170 22 6 5.1603 9.1977 2.3161 23 6 4.6486 9.9234 1.0701 24 6 6.6903 9.1886 2.3087 25 7 4.9656 6.9856 1.3138 26 6 4.5414 5.7334 1.2795 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5001 1.6702 -2.0116 33 1 1.8989 3.1544 -1.1138 34 1 3.3460 3.7178 -4.4531 35 1 3.1695 3.4675 3.1558 36 1 2.8094 5.8093 4.1797 37 1 4.8041 9.7129 3.2082 38 1 5.0045 9.4085 0.1778 39 1 3.5586 9.9299 1.0754 40 1 5.0184 10.9488 1.0693 41 1 7.0463 8.6737 1.4164 42 1 7.0598 10.2141 2.3075 43 1 7.0549 8.6717 3.1963 44 1 4.8077 5.0870 0.4563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280921146.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:44 Heat of formation + Delta-G solvation = -12.369315 kcal Electronic energy + Delta-G solvation = -27332.359487 eV Core-core repulsion = 23478.625660 eV Total energy + Delta-G solvation = -3853.733827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35478 -40.14892 -38.21671 -36.19271 -35.51009 -34.24738 -33.60802 -32.71574 -30.59034 -29.81412 -27.20222 -27.16000 -25.47578 -24.72345 -23.78601 -23.12728 -21.68383 -20.77977 -19.64041 -17.86496 -17.34578 -16.75605 -16.67014 -16.57749 -15.88347 -15.27770 -15.05127 -14.74713 -14.43621 -14.31243 -14.05406 -13.81701 -13.53867 -13.43886 -13.06092 -12.92358 -12.42001 -12.19337 -12.08609 -12.02607 -11.76607 -11.69877 -11.33335 -11.08586 -11.00791 -10.97277 -10.87988 -10.77329 -10.70051 -10.66902 -10.52885 -10.04009 -9.73731 -9.22125 -8.81401 -8.41954 -8.30163 -7.94856 -6.08594 -4.11421 0.84794 1.16190 1.98395 2.66471 3.27146 3.35871 3.37719 3.64608 3.85772 3.86961 3.98794 4.24628 4.40165 4.57163 4.82872 4.93573 5.00722 5.07949 5.09224 5.28317 5.45001 5.49284 5.59243 5.62034 5.73479 5.74141 5.81472 5.82554 5.96386 6.08850 6.11042 6.18499 6.21879 6.30916 6.49137 6.60076 6.62902 7.03160 7.16391 7.30158 7.37558 7.79267 7.98061 8.10340 8.16145 8.20041 8.52621 8.88756 9.51844 11.00267 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.004373 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.504853 B = 6401.585268 C = 8231.018725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.556 5.556 4 C 0.228 3.772 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.509 3.491 14 O -0.560 6.560 15 C 0.489 3.511 16 O -0.427 6.427 17 N -0.652 5.652 18 C 0.050 3.950 19 C 0.121 3.879 20 N -0.502 5.502 21 C 0.293 3.707 22 C -0.021 4.021 23 C -0.142 4.142 24 C -0.141 4.141 25 N -0.490 5.490 26 C 0.152 3.848 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.420 0.580 36 H 0.169 0.831 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 5.424 11.844 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.109 3.891 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.207 1.207 13 C 0.291 3.709 14 O -0.441 6.441 15 C 0.270 3.730 16 O -0.294 6.294 17 N -0.302 5.302 18 C -0.050 4.050 19 C -0.048 4.048 20 N -0.215 5.215 21 C 0.025 3.975 22 C -0.042 4.042 23 C -0.200 4.200 24 C -0.199 4.199 25 N -0.203 5.203 26 C -0.017 4.017 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.187 0.813 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.723 6.499 11.313 13.067 hybrid contribution 0.503 -1.285 -0.084 1.383 sum 1.226 5.214 11.230 12.442 Atomic orbital electron populations 1.22104 0.96132 1.01679 1.02310 1.21459 0.94043 0.82599 1.03127 1.48323 1.58528 1.13535 1.08233 1.19960 0.97865 0.93303 0.77966 1.21211 0.94364 1.33367 1.06625 0.92702 1.24795 0.97247 0.94762 0.96394 1.69915 1.33738 1.33958 1.15080 0.86557 0.85022 0.77981 0.78551 1.19917 1.21011 1.20736 1.19573 0.80478 0.86149 0.84678 1.90662 1.56197 1.66307 1.30954 1.20596 0.80628 0.88142 0.83611 1.91000 1.46262 1.63423 1.28690 1.43080 1.64770 1.11316 1.11080 1.19592 0.98530 0.87125 0.99774 1.23058 0.96160 0.87743 0.97806 1.68177 1.11159 1.15553 1.26631 1.23094 0.91702 0.97065 0.85595 1.19876 0.96298 0.87512 1.00493 1.21809 1.01024 0.99845 0.97352 1.21796 0.93306 1.02073 1.02717 1.68256 1.22668 1.04122 1.25245 1.23803 0.88730 0.91886 0.97258 0.91954 0.92686 0.92182 0.89806 0.90482 0.94784 0.91832 0.92796 0.74239 0.81348 0.88949 0.91218 0.92795 0.91838 0.91314 0.91833 0.92912 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.11 1.86 6.11 -4.04 -0.02 1.84 16 3 N -0.56 -11.26 2.47 -175.61 -0.43 -11.70 16 4 C 0.23 5.43 4.78 -5.19 -0.02 5.40 16 5 C -0.52 -13.52 7.80 -34.44 -0.27 -13.79 16 6 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 8 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.51 9.98 7.67 -11.63 -0.09 9.89 16 14 O -0.56 -10.84 16.04 5.49 0.09 -10.75 16 15 C 0.49 9.26 7.59 -11.63 -0.09 9.17 16 16 O -0.43 -9.52 9.59 5.47 0.05 -9.46 16 17 N -0.65 -9.79 5.35 -10.11 -0.05 -9.84 16 18 C 0.05 0.76 6.35 -83.45 -0.53 0.23 16 19 C 0.12 1.59 11.26 -16.98 -0.19 1.40 16 20 N -0.50 -7.18 10.29 -10.56 -0.11 -7.29 16 21 C 0.29 4.32 6.34 -157.18 -1.00 3.32 16 22 C -0.02 -0.25 3.25 -91.77 -0.30 -0.55 16 23 C -0.14 -1.57 9.08 37.16 0.34 -1.23 16 24 C -0.14 -1.45 9.09 37.16 0.34 -1.11 16 25 N -0.49 -8.14 9.79 -10.57 -0.10 -8.25 16 26 C 0.15 2.63 9.98 -16.98 -0.17 2.46 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 31 H 0.08 1.25 7.36 -51.93 -0.38 0.87 16 32 H 0.03 0.84 8.02 -51.93 -0.42 0.43 16 33 H 0.06 1.66 5.84 -51.93 -0.30 1.35 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.42 5.22 8.30 -40.82 -0.34 4.88 16 36 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.79 8.01 -51.93 -0.42 0.38 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.19 3.62 6.29 -52.49 -0.33 3.29 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -30.55 371.89 -7.33 -37.88 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.37 Total: 5.23 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: -1.72 Total: 16.86 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.04 Total: -61.51 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.14 Total: -20.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.55 -7.33 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280921146.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.514 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds