Wall clock time and date at job start Tue Mar 31 2020 12:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 S 1.65603 * 120.00110 * 119.99604 * 12 2 1 15 15 O 1.42103 * 106.39984 * 203.54254 * 14 12 2 16 16 O 1.42101 * 106.40348 * 336.46504 * 14 12 2 17 17 N 1.65604 * 107.21689 * 90.00259 * 14 12 2 18 18 C 1.46497 * 119.99842 * 64.99780 * 17 14 12 19 19 C 1.52998 * 109.46999 * 164.99840 * 18 17 14 20 20 C 1.52999 * 109.47166 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.48335 * 305.02841 * 20 19 18 22 22 C 1.53097 * 109.48178 * 185.00031 * 20 19 18 23 23 C 1.53177 * 109.16289 * 182.41116 * 22 20 19 24 24 C 1.53173 * 109.03601 * 56.98349 * 23 22 20 25 25 C 1.53090 * 109.16496 * 303.01693 * 24 23 22 26 26 O 1.42906 * 109.47752 * 65.06227 * 20 19 18 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 33 33 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 34 34 H 0.96995 * 119.99880 * 245.00500 * 17 14 12 35 35 H 1.08997 * 109.47490 * 285.00420 * 18 17 14 36 36 H 1.09002 * 109.47300 * 45.00135 * 18 17 14 37 37 H 1.08997 * 109.47473 * 300.00591 * 19 18 17 38 38 H 1.09007 * 109.47227 * 60.00303 * 19 18 17 39 39 H 1.09000 * 109.52179 * 302.32057 * 22 20 19 40 40 H 1.08999 * 109.51880 * 62.44537 * 22 20 19 41 41 H 1.09001 * 109.54352 * 176.84818 * 23 22 20 42 42 H 1.08998 * 109.54511 * 297.11605 * 23 22 20 43 43 H 1.09003 * 109.52427 * 62.92251 * 24 23 22 44 44 H 1.08999 * 109.52333 * 183.04741 * 24 23 22 45 45 H 1.09003 * 109.48283 * 177.58950 * 25 24 23 46 46 H 1.09003 * 109.48388 * 297.62819 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 2.8227 -0.5644 -3.5260 16 8 2.6904 1.4974 -2.1193 17 7 4.5438 -0.1041 -1.8181 18 6 5.1357 -1.4439 -1.8417 19 6 6.6577 -1.3310 -1.7337 20 6 7.2759 -2.7303 -1.7577 21 1 6.8282 -3.3390 -0.9722 22 6 8.7855 -2.6256 -1.5248 23 6 9.4055 -4.0237 -1.6101 24 6 9.0688 -4.6372 -2.9725 25 6 7.5484 -4.6643 -3.1496 26 8 7.0324 -3.3371 -3.0284 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 0.7376 -2.1442 -1.9994 32 1 2.4629 -2.5818 -1.9864 33 1 1.5295 -2.5968 -0.4710 34 1 5.0733 0.6551 -1.5282 35 1 4.7540 -2.0246 -1.0020 36 1 4.8736 -1.9406 -2.7759 37 1 7.0395 -0.7502 -2.5734 38 1 6.9199 -0.8343 -0.7995 39 1 9.2279 -1.9837 -2.2865 40 1 8.9732 -2.2025 -0.5380 41 1 10.4875 -3.9500 -1.5008 42 1 8.9996 -4.6516 -0.8170 43 1 9.5170 -4.0360 -3.7636 44 1 9.4602 -5.6534 -3.0212 45 1 7.3042 -5.0605 -4.1353 46 1 7.1042 -5.2985 -2.3824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330428971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:40 Heat of formation + Delta-G solvation = -142.014419 kcal Electronic energy + Delta-G solvation = -26549.556647 eV Core-core repulsion = 22793.352187 eV Total energy + Delta-G solvation = -3756.204460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.64560 -36.63941 -36.12889 -35.67267 -35.17606 -33.82631 -32.58854 -32.38569 -29.05716 -28.60524 -25.47508 -25.17098 -24.99132 -23.51332 -21.60331 -20.72702 -20.47322 -18.74557 -17.15440 -16.74262 -16.60266 -16.40746 -16.17854 -15.66535 -15.04872 -14.77430 -14.71733 -14.25739 -14.16639 -13.81157 -13.40922 -13.17459 -12.91268 -12.71549 -12.46990 -12.15058 -11.94158 -11.75759 -11.62556 -11.52588 -11.43114 -11.32491 -11.24414 -11.19263 -11.17150 -10.94660 -10.89290 -10.83397 -10.40857 -10.39287 -10.19435 -10.05566 -9.57670 -9.32524 -9.03662 -8.48125 -7.93139 -6.09315 -4.17683 1.33506 3.23031 3.30609 3.31888 3.54739 3.63964 4.21311 4.34779 4.44980 4.54571 4.61144 4.69301 4.96662 5.02162 5.08641 5.17100 5.20814 5.21664 5.31565 5.45777 5.50637 5.55018 5.63086 5.69408 5.71367 5.76591 5.83796 5.97539 6.02689 6.13489 6.21597 6.28675 6.41520 6.69305 6.90497 6.90678 7.10566 7.14072 7.30844 7.57053 7.64699 7.80010 8.06553 8.27156 8.85251 9.48334 10.95756 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.004140 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.109447 B = 6761.120471 C = 8149.046611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.991 5.991 13 C 0.106 3.894 14 S 2.783 3.217 15 O -0.998 6.998 16 O -0.984 6.984 17 N -1.129 6.129 18 C 0.124 3.876 19 C -0.118 4.118 20 C 0.091 3.909 21 H 0.063 0.937 22 C -0.150 4.150 23 C -0.123 4.123 24 C -0.157 4.157 25 C 0.060 3.940 26 O -0.375 6.375 27 H 0.092 0.908 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.396 -9.601 -7.294 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.833 5.833 13 C -0.041 4.041 14 S 2.792 3.208 15 O -0.981 6.981 16 O -0.968 6.968 17 N -0.888 5.888 18 C -0.002 4.002 19 C -0.156 4.156 20 C 0.032 3.968 21 H 0.081 0.919 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.195 4.195 25 C -0.017 4.017 26 O -0.294 6.294 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.244 0.756 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.787 -9.057 -8.137 18.393 hybrid contribution 0.902 -0.566 1.693 2.001 sum 14.690 -9.623 -6.443 18.706 Atomic orbital electron populations 1.22052 0.98009 0.99637 1.00732 1.18712 0.91857 0.92745 0.80194 0.92378 1.21379 1.31763 1.13075 0.90190 0.91948 1.24927 0.94980 0.95003 0.98962 1.69882 1.36223 1.22630 1.23765 0.86538 0.78562 0.79891 0.82586 1.20728 1.21202 1.19976 1.57702 1.64531 1.21336 1.39757 1.21201 0.99029 0.82109 1.01743 1.01753 0.72618 0.73063 0.73350 1.93541 1.86044 1.76334 1.42223 1.93587 1.83720 1.32575 1.86912 1.56003 1.32330 1.14956 1.85472 1.21149 0.93299 0.83473 1.02320 1.21804 0.94962 0.95334 1.03540 1.22093 0.94120 0.94335 0.86211 0.91866 1.22207 0.96120 0.97616 1.02851 1.21589 1.00825 0.96398 0.97257 1.22197 0.97540 1.01547 0.98171 1.22554 0.92578 0.84436 1.02129 1.87988 1.78460 1.28779 1.34184 0.88955 0.94892 0.96876 0.92658 0.93903 0.93209 0.90276 0.75622 0.91764 0.90141 0.90394 0.89655 0.90975 0.90699 0.91585 0.91766 0.91122 0.91087 0.88904 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.36 7.99 -34.44 -0.28 -13.63 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.32 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 12 N -0.99 -20.76 3.12 -115.86 -0.36 -21.12 16 13 C 0.11 1.91 9.28 59.85 0.56 2.47 16 14 S 2.78 55.82 6.10 -107.50 -0.66 55.17 16 15 O -1.00 -21.15 16.68 -57.17 -0.95 -22.11 16 16 O -0.98 -22.84 16.70 -57.17 -0.95 -23.79 16 17 N -1.13 -18.18 6.05 -10.62 -0.06 -18.25 16 18 C 0.12 1.76 6.14 -4.04 -0.02 1.73 16 19 C -0.12 -1.33 5.06 -26.73 -0.14 -1.46 16 20 C 0.09 0.95 2.64 -26.68 -0.07 0.88 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 C -0.15 -1.29 5.42 -26.59 -0.14 -1.43 16 23 C -0.12 -0.93 6.03 -26.55 -0.16 -1.09 16 24 C -0.16 -1.17 6.14 -26.60 -0.16 -1.34 16 25 C 0.06 0.53 6.84 37.20 0.25 0.79 16 26 O -0.37 -4.41 9.94 -35.23 -0.35 -4.76 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 33 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 34 H 0.41 5.86 8.65 -34.47 -0.30 5.57 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.21 7.43 -51.93 -0.39 0.82 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -31.67 374.40 -10.16 -41.83 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.96 Total: 4.20 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.11 Total: -8.27 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.20 Total: -63.07 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -2.26 Total: -50.66 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 55.82 SS G_CDS: -0.66 Total: 55.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.67 -10.16 -41.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330428971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.184 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds