Wall clock time and date at job start Tue Mar 31 2020 13:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46996 * 2 1 4 4 C 1.46499 * 119.99929 * 294.01180 * 3 2 1 5 5 C 1.50704 * 109.47208 * 275.00264 * 4 3 2 6 6 H 1.08001 * 119.99810 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00267 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99797 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47326 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47382 * 120.00080 * 9 7 5 12 12 H 1.48509 * 109.46962 * 240.00037 * 9 7 5 13 13 S 1.65601 * 119.99892 * 114.01464 * 3 2 1 14 14 O 1.42104 * 106.39919 * 153.78839 * 13 3 2 15 15 O 1.42097 * 106.40192 * 20.87223 * 13 3 2 16 16 N 1.65595 * 107.21636 * 267.32756 * 13 3 2 17 17 C 1.46501 * 119.99940 * 67.93451 * 16 13 3 18 18 H 1.08994 * 109.47283 * 4.11611 * 17 16 13 19 19 C 1.52999 * 109.47341 * 244.11168 * 17 16 13 20 20 C 1.53008 * 109.47001 * 124.11392 * 17 16 13 21 21 H 1.09000 * 109.47865 * 305.02337 * 20 17 16 22 22 C 1.53095 * 109.47891 * 184.99935 * 20 17 16 23 23 C 1.53174 * 109.21320 * 182.36743 * 22 20 17 24 24 C 1.53306 * 108.96673 * 56.95024 * 23 22 20 25 25 C 1.53092 * 109.20050 * 303.05639 * 24 23 22 26 26 O 1.42900 * 109.41021 * 57.60989 * 25 24 23 27 27 H 1.08999 * 109.46918 * 292.14674 * 1 2 3 28 28 H 1.09004 * 109.46768 * 52.14789 * 1 2 3 29 29 H 1.09000 * 109.47355 * 172.15070 * 1 2 3 30 30 H 1.08996 * 109.46874 * 239.99847 * 2 1 3 31 31 H 1.09004 * 109.46958 * 119.99819 * 2 1 3 32 32 H 1.08998 * 109.47143 * 35.00007 * 4 3 2 33 33 H 1.08999 * 109.47063 * 155.00321 * 4 3 2 34 34 H 0.97001 * 120.00097 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00408 * 247.93040 * 16 13 3 36 36 H 1.08996 * 109.47556 * 171.69674 * 19 17 16 37 37 H 1.08998 * 109.46959 * 291.70514 * 19 17 16 38 38 H 1.09007 * 109.47002 * 51.69511 * 19 17 16 39 39 H 1.08998 * 109.52077 * 302.30529 * 22 20 17 40 40 H 1.08994 * 109.52097 * 62.42911 * 22 20 17 41 41 H 1.08998 * 109.54497 * 176.88376 * 23 22 20 42 42 H 1.09004 * 109.54340 * 297.14154 * 23 22 20 43 43 H 1.09005 * 109.50741 * 183.14002 * 24 23 22 44 44 H 1.09004 * 109.50652 * 62.97729 * 24 23 22 45 45 H 1.08994 * 109.48169 * 297.62756 * 25 24 23 46 46 H 1.08995 * 109.48172 * 177.58785 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7757 2.2439 -1.1589 5 6 2.8520 2.0160 -2.1889 6 1 3.6379 1.2998 -1.9993 7 6 2.8328 2.7209 -3.3736 8 7 1.8750 3.5919 -3.6051 9 14 4.1665 2.4379 -4.6506 10 1 5.1199 1.4143 -4.1521 11 1 3.5486 1.9652 -5.9154 12 1 4.8918 3.7098 -4.8991 13 16 2.8446 1.9673 1.3100 14 8 3.6817 3.0076 0.8238 15 8 3.3397 0.8351 2.0115 16 7 1.7355 2.6870 2.3071 17 6 0.7362 1.8710 3.0011 18 1 0.9234 0.8167 2.7979 19 6 -0.6619 2.2456 2.5050 20 6 0.8277 2.1242 4.5073 21 1 1.8480 1.9426 4.8450 22 6 -0.1289 1.1818 5.2424 23 6 -0.0762 1.4806 6.7438 24 6 -0.4235 2.9565 6.9706 25 6 0.5444 3.8305 6.1687 26 8 0.4674 3.4788 4.7858 27 1 -0.3633 0.3874 0.9518 28 1 -0.3633 0.6306 -0.8115 29 1 -0.3634 -1.0180 -0.1403 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.8034 2.0071 -1.5910 33 1 1.7891 3.2874 -0.8443 34 1 1.8617 4.0882 -4.4385 35 1 1.7476 3.6489 2.4317 36 1 -1.3909 1.5429 2.9083 37 1 -0.9071 3.2544 2.8373 38 1 -0.6835 2.2067 1.4159 39 1 -1.1440 1.3346 4.8760 40 1 0.1704 0.1487 5.0659 41 1 -0.7958 0.8506 7.2665 42 1 0.9269 1.2803 7.1205 43 1 -0.3343 3.1927 8.0310 44 1 -1.4446 3.1452 6.6391 45 1 1.5610 3.6712 6.5282 46 1 0.2750 4.8793 6.2926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336891199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:03 Heat of formation + Delta-G solvation = -139.849770 kcal Electronic energy + Delta-G solvation = -27233.693770 eV Core-core repulsion = 23477.583176 eV Total energy + Delta-G solvation = -3756.110594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.79386 -36.71118 -36.13671 -35.75886 -35.12439 -33.80721 -32.60624 -31.34675 -29.90261 -28.80132 -26.67952 -25.48454 -24.01728 -23.22254 -21.51579 -21.43586 -20.16080 -18.80994 -17.43712 -16.90380 -16.39637 -16.26638 -16.06777 -15.75101 -15.14600 -14.82742 -14.72805 -14.30736 -14.05529 -13.55837 -13.39006 -13.13150 -13.00134 -12.86341 -12.75924 -12.13085 -12.04350 -11.83928 -11.68490 -11.54864 -11.47276 -11.32711 -11.29210 -11.21095 -11.06563 -10.98638 -10.81102 -10.72503 -10.56816 -10.55261 -10.31145 -9.95524 -9.69674 -9.58409 -9.20677 -8.40659 -8.02046 -6.02712 -4.05781 1.28800 3.33367 3.41034 3.45935 3.50971 3.65987 4.17127 4.47355 4.48951 4.58667 4.63266 4.76461 4.90294 5.00390 5.04436 5.17611 5.20349 5.32328 5.33205 5.43120 5.47729 5.53884 5.60928 5.63887 5.70506 5.75618 5.76817 5.80196 5.84774 5.98827 6.02377 6.04416 6.23244 6.38105 6.45047 6.66296 6.69231 7.11816 7.23176 7.34957 7.49578 7.69177 7.95449 8.25614 8.96679 9.59021 11.05915 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.003649 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.716201 B = 7670.852921 C = 7835.355181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.777 3.223 14 O -0.964 6.964 15 O -1.002 7.002 16 N -1.124 6.124 17 C 0.165 3.835 18 H 0.097 0.903 19 C -0.167 4.167 20 C 0.083 3.917 21 H 0.064 0.936 22 C -0.153 4.153 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.060 3.940 26 O -0.370 6.370 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.417 0.583 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -4.134 19.397 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.785 3.215 14 O -0.948 6.948 15 O -0.985 6.985 16 N -0.882 5.882 17 C 0.057 3.943 18 H 0.115 0.885 19 C -0.226 4.226 20 C 0.023 3.977 21 H 0.082 0.918 22 C -0.191 4.191 23 C -0.159 4.159 24 C -0.194 4.194 25 C -0.017 4.017 26 O -0.289 6.289 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.478 -4.139 19.228 21.042 hybrid contribution 0.315 0.223 -0.556 0.676 sum -7.163 -3.916 18.673 20.379 Atomic orbital electron populations 1.22324 0.96862 1.01677 1.02523 1.21118 0.93810 0.83145 1.02799 1.57718 1.74114 1.19700 1.31757 1.19003 0.97431 0.88250 0.81658 1.21534 1.10683 1.23045 1.01213 0.92186 1.24921 0.95997 0.94920 0.98241 1.69929 1.32585 1.25616 1.25429 0.86474 0.81894 0.78221 0.81036 1.19680 1.21043 1.20865 1.02029 0.73636 0.73220 0.72568 1.93642 1.63922 1.57632 1.79606 1.93515 1.78364 1.52705 1.73928 1.56254 1.50089 1.19124 1.62737 1.20657 0.89557 0.94888 0.89238 0.88548 1.22284 0.95072 1.02860 1.02371 1.22502 0.97549 0.82522 0.95129 0.91768 1.22254 1.01241 1.00087 0.95522 1.21600 1.01944 0.96243 0.96161 1.22213 1.00831 0.95832 1.00496 1.22548 0.98125 0.99010 0.82026 1.87931 1.89138 1.27626 1.24208 0.92759 0.91318 0.92467 0.90697 0.90672 0.94462 0.94618 0.92827 0.74995 0.92006 0.91053 0.91016 0.90376 0.90553 0.91462 0.91845 0.91174 0.91042 0.93354 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 9.96 37.16 0.37 -2.09 16 2 C 0.12 2.01 6.57 -4.04 -0.03 1.98 16 3 N -0.99 -20.21 2.92 -115.66 -0.34 -20.55 16 4 C 0.26 6.40 4.99 -5.19 -0.03 6.37 16 5 C -0.53 -14.78 9.38 -34.44 -0.32 -15.11 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 S 2.78 55.37 6.02 -107.50 -0.65 54.72 16 14 O -0.96 -23.51 17.21 -57.17 -0.98 -24.49 16 15 O -1.00 -20.59 15.97 -57.17 -0.91 -21.50 16 16 N -1.12 -17.38 5.41 -4.89 -0.03 -17.41 16 17 C 0.16 2.10 2.60 -67.93 -0.18 1.92 16 18 H 0.10 1.20 7.19 -51.93 -0.37 0.83 16 19 C -0.17 -1.93 7.84 37.16 0.29 -1.64 16 20 C 0.08 0.94 2.57 -26.68 -0.07 0.87 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 C -0.15 -1.36 5.22 -26.59 -0.14 -1.50 16 23 C -0.12 -0.93 6.04 -26.48 -0.16 -1.09 16 24 C -0.16 -1.16 6.14 -26.53 -0.16 -1.32 16 25 C 0.06 0.53 6.84 37.20 0.25 0.79 16 26 O -0.37 -4.28 9.25 -35.23 -0.33 -4.61 16 27 H 0.05 0.66 4.96 -51.93 -0.26 0.40 16 28 H 0.07 1.09 6.67 -51.93 -0.35 0.74 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.17 6.77 -51.93 -0.35 0.82 16 32 H 0.04 0.93 6.64 -51.93 -0.34 0.58 16 33 H 0.04 0.95 7.68 -51.93 -0.40 0.55 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.42 6.13 8.87 -34.47 -0.31 5.83 16 36 H 0.06 0.58 6.94 -51.93 -0.36 0.22 16 37 H 0.07 0.85 7.29 -51.93 -0.38 0.47 16 38 H 0.07 0.92 6.83 -51.93 -0.35 0.56 16 39 H 0.08 0.67 6.65 -51.93 -0.35 0.32 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -33.52 368.58 -9.82 -43.34 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.59 Total: 2.56 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -0.26 Total: -9.17 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 0.37 Total: -63.43 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.22 Total: -50.60 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 55.37 SS G_CDS: -0.65 Total: 54.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.52 -9.82 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336891199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.512 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds