Wall clock time and date at job start Tue Mar 31 2020 13:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46935 * 2 1 4 4 C 1.46499 * 120.00161 * 274.99907 * 3 2 1 5 5 C 1.50704 * 109.47156 * 275.00208 * 4 3 2 6 6 H 1.07993 * 120.00102 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99764 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00265 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99707 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47436 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47104 * 119.99886 * 9 7 5 12 12 H 1.48497 * 109.47262 * 239.99667 * 9 7 5 13 13 S 1.65607 * 120.00023 * 94.99898 * 3 2 1 14 14 O 1.42098 * 106.39937 * 336.45999 * 13 3 2 15 15 O 1.42098 * 106.40190 * 203.53976 * 13 3 2 16 16 N 1.65600 * 107.21384 * 90.00226 * 13 3 2 17 17 C 1.46503 * 120.00333 * 65.00217 * 16 13 3 18 18 H 1.08998 * 109.46470 * 334.99495 * 17 16 13 19 19 C 1.52995 * 109.46932 * 94.99751 * 17 16 13 20 20 C 1.53000 * 109.46902 * 214.99682 * 17 16 13 21 21 H 1.09000 * 109.49255 * 54.96960 * 20 17 16 22 22 C 1.53091 * 109.47862 * 175.00006 * 20 17 16 23 23 C 1.53176 * 109.21206 * 177.62293 * 22 20 17 24 24 C 1.53174 * 109.04061 * 302.98570 * 23 22 20 25 25 C 1.53097 * 109.16185 * 56.97999 * 24 23 22 26 26 O 1.42902 * 109.41493 * 302.39739 * 25 24 23 27 27 H 1.08999 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47213 * 299.99626 * 1 2 3 29 29 H 1.09004 * 109.47432 * 60.00567 * 1 2 3 30 30 H 1.08997 * 109.47213 * 240.00374 * 2 1 3 31 31 H 1.08995 * 109.47219 * 119.99991 * 2 1 3 32 32 H 1.09009 * 109.47113 * 34.99961 * 4 3 2 33 33 H 1.09004 * 109.47233 * 154.99920 * 4 3 2 34 34 H 0.97006 * 120.00045 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99615 * 244.99550 * 16 13 3 36 36 H 1.08999 * 109.47313 * 299.99677 * 19 17 16 37 37 H 1.08998 * 109.47757 * 59.99972 * 19 17 16 38 38 H 1.09008 * 109.47069 * 179.97438 * 19 17 16 39 39 H 1.09002 * 109.52401 * 57.68445 * 22 20 17 40 40 H 1.09004 * 109.52068 * 297.56090 * 22 20 17 41 41 H 1.08995 * 109.54674 * 62.85906 * 23 22 20 42 42 H 1.08999 * 109.54128 * 183.11874 * 23 22 20 43 43 H 1.08995 * 109.52612 * 176.89131 * 24 23 22 44 44 H 1.09001 * 109.51989 * 297.07828 * 24 23 22 45 45 H 1.08997 * 109.47580 * 62.37620 * 25 24 23 46 46 H 1.08994 * 109.47934 * 182.41016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8823 6 1 4.1723 1.1118 -1.3836 7 6 3.8524 2.3607 -3.0849 8 7 3.0271 3.1848 -3.6925 9 14 5.5094 1.9647 -3.8511 10 1 6.2458 1.0176 -2.9760 11 1 5.3027 1.3465 -5.1854 12 1 6.2966 3.2148 -4.0014 13 16 2.4121 2.1203 1.4287 14 8 1.6867 1.4415 2.4448 15 8 2.3055 3.5186 1.1999 16 7 4.0143 1.8138 1.7137 17 6 5.0350 2.3526 0.8113 18 1 4.5967 2.5239 -0.1718 19 6 5.5643 3.6744 1.3713 20 6 6.1867 1.3528 0.6892 21 1 5.7962 0.3847 0.3755 22 6 7.1932 1.8578 -0.3480 23 6 8.3723 0.8828 -0.4224 24 6 8.9948 0.7442 0.9703 25 6 7.9198 0.2816 1.9574 26 8 6.8388 1.2162 1.9549 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.3616 1.8097 -1.9453 33 1 2.0920 3.1803 -1.0756 34 1 3.2786 3.5868 -4.5387 35 1 4.2770 1.2776 2.4782 36 1 4.7438 4.3866 1.4583 37 1 6.0024 3.5030 2.3545 38 1 6.3240 4.0750 0.7001 39 1 7.5539 2.8439 -0.0555 40 1 6.7106 1.9209 -1.3233 41 1 8.0196 -0.0907 -0.7627 42 1 9.1184 1.2655 -1.1188 43 1 9.7999 0.0102 0.9381 44 1 9.3918 1.7079 1.2893 45 1 7.5520 -0.7004 1.6603 46 1 8.3469 0.2224 2.9584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336891200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:06 Heat of formation + Delta-G solvation = -141.511792 kcal Electronic energy + Delta-G solvation = -28130.129511 eV Core-core repulsion = 24373.946847 eV Total energy + Delta-G solvation = -3756.182665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.46351 -36.62131 -36.09853 -35.47346 -35.11114 -33.50362 -32.80662 -31.06669 -29.95359 -28.46277 -26.68469 -25.11515 -23.72028 -23.16078 -21.74008 -21.12727 -19.81838 -18.73050 -17.18544 -16.81959 -16.55865 -15.95859 -15.92683 -15.55019 -15.01458 -14.64079 -14.43548 -14.26819 -13.80776 -13.40300 -13.17430 -12.95025 -12.82971 -12.65255 -12.52470 -12.10627 -11.95917 -11.77567 -11.68969 -11.51887 -11.34380 -11.27874 -11.16021 -11.11747 -11.05848 -10.81797 -10.63893 -10.56508 -10.53752 -10.28995 -10.07931 -9.92944 -9.69349 -9.26240 -8.92527 -8.59483 -8.07196 -6.21738 -4.28327 1.39016 3.13522 3.20325 3.24459 3.61065 3.90048 4.23970 4.28454 4.83119 4.88266 4.95651 5.07585 5.10022 5.19046 5.30081 5.36579 5.44733 5.53669 5.61418 5.76151 5.79606 5.81104 5.88529 5.89873 5.95815 6.03731 6.08299 6.12648 6.20297 6.28756 6.33518 6.36543 6.42940 6.66264 6.69392 6.79550 6.85313 7.32829 7.37018 7.41693 7.54127 7.69306 7.78670 8.06526 8.76354 9.36204 10.85573 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010486 B = 0.007445 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.696391 B = 3760.160782 C = 5383.897054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.994 5.994 4 C 0.241 3.759 5 C -0.546 4.546 6 H 0.068 0.932 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.878 3.122 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.279 1.279 13 S 2.784 3.216 14 O -1.003 7.003 15 O -0.979 6.979 16 N -1.120 6.120 17 C 0.141 3.859 18 H 0.144 0.856 19 C -0.164 4.164 20 C 0.094 3.906 21 H 0.064 0.936 22 C -0.160 4.160 23 C -0.121 4.121 24 C -0.154 4.154 25 C 0.062 3.938 26 O -0.377 6.377 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.265 0.735 35 H 0.408 0.592 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -6.177 7.129 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.836 5.836 4 C 0.119 3.881 5 C -0.585 4.585 6 H 0.086 0.914 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.706 3.294 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.205 1.205 13 S 2.792 3.208 14 O -0.987 6.987 15 O -0.963 6.963 16 N -0.878 5.878 17 C 0.034 3.966 18 H 0.161 0.839 19 C -0.223 4.223 20 C 0.035 3.965 21 H 0.082 0.918 22 C -0.198 4.198 23 C -0.159 4.159 24 C -0.192 4.192 25 C -0.015 4.015 26 O -0.296 6.296 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.116 -5.306 7.508 11.626 hybrid contribution 1.516 -0.885 -0.837 1.945 sum 8.632 -6.191 6.671 12.544 Atomic orbital electron populations 1.22205 0.97012 1.01324 1.02373 1.20949 0.93606 0.82917 1.02038 1.57736 1.78775 1.22894 1.24146 1.19233 0.97246 0.92425 0.79238 1.21627 1.02507 1.28224 1.06186 0.91385 1.24948 0.97054 0.94732 0.96761 1.69934 1.35731 1.29276 1.16849 0.86825 0.84250 0.78723 0.79650 1.18565 1.21002 1.20525 1.01784 0.72661 0.73774 0.72571 1.93536 1.70720 1.76303 1.58183 1.93573 1.85969 1.31059 1.85658 1.55980 1.25034 1.68427 1.38370 1.21441 0.87222 0.91605 0.96302 0.83873 1.22224 1.01570 0.97166 1.01365 1.22357 0.91893 0.98860 0.83418 0.91789 1.22390 0.96586 0.99822 1.01025 1.21568 0.97815 0.99973 0.96554 1.22182 0.98573 1.02233 0.96230 1.22491 0.87546 0.92031 0.99474 1.87925 1.47047 1.62624 1.31979 0.92429 0.92655 0.92103 0.90301 0.91951 0.94296 0.92973 0.92476 0.75948 0.91502 0.92251 0.92066 0.90596 0.89626 0.91929 0.91705 0.91438 0.91181 0.93574 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.26 6.06 -4.04 -0.02 2.23 16 3 N -0.99 -19.97 2.82 -115.66 -0.33 -20.29 16 4 C 0.24 5.68 5.31 -5.19 -0.03 5.65 16 5 C -0.55 -13.10 6.91 -34.44 -0.24 -13.33 16 6 H 0.07 1.54 6.94 -52.49 -0.36 1.18 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.88 -23.83 13.29 55.43 0.74 -23.10 16 9 Si 0.88 18.94 27.88 -169.99 -4.74 14.20 16 10 H -0.26 -5.20 6.07 56.52 0.34 -4.86 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 S 2.78 55.80 6.01 -107.50 -0.65 55.15 16 14 O -1.00 -20.87 17.11 -57.17 -0.98 -21.84 16 15 O -0.98 -22.72 15.95 -57.17 -0.91 -23.63 16 16 N -1.12 -19.39 5.52 -4.89 -0.03 -19.42 16 17 C 0.14 2.50 2.38 -67.93 -0.16 2.33 16 18 H 0.14 2.93 4.25 -51.93 -0.22 2.71 16 19 C -0.16 -2.77 9.08 37.16 0.34 -2.43 16 20 C 0.09 1.47 2.53 -26.68 -0.07 1.40 16 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 22 C -0.16 -2.44 5.22 -26.59 -0.14 -2.58 16 23 C -0.12 -1.54 6.03 -26.55 -0.16 -1.70 16 24 C -0.15 -1.66 6.14 -26.59 -0.16 -1.83 16 25 C 0.06 0.70 6.84 37.21 0.25 0.96 16 26 O -0.38 -5.43 9.25 -35.23 -0.33 -5.76 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.33 8.11 -51.93 -0.42 0.90 16 31 H 0.06 0.97 7.61 -51.93 -0.40 0.58 16 32 H 0.04 0.96 8.11 -51.92 -0.42 0.54 16 33 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.41 6.23 8.59 -34.47 -0.30 5.94 16 36 H 0.07 1.22 7.64 -51.93 -0.40 0.82 16 37 H 0.06 0.93 7.56 -51.93 -0.39 0.54 16 38 H 0.06 0.95 6.52 -51.92 -0.34 0.61 16 39 H 0.08 1.11 6.46 -51.93 -0.34 0.77 16 40 H 0.09 1.48 5.04 -51.93 -0.26 1.21 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -29.05 363.79 -9.47 -38.52 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.62 Total: 10.63 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.11 Total: -9.95 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.38 Total: -62.81 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -2.22 Total: -51.23 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.74 Total: 14.20 kcal Atomic # 16 Polarization: 55.80 SS G_CDS: -0.65 Total: 55.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.05 -9.47 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336891200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.996 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds