Wall clock time and date at job start Tue Mar 31 2020 13:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47382 * 2 1 4 4 C 1.46505 * 119.99863 * 276.21848 * 3 2 1 5 5 C 1.50704 * 109.47186 * 280.06758 * 4 3 2 6 6 H 1.07999 * 119.99683 * 4.44065 * 5 4 3 7 7 C 1.37873 * 120.00037 * 184.43977 * 5 4 3 8 8 N 1.31509 * 119.99917 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00015 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46799 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47276 * 120.00084 * 9 7 5 12 12 H 1.48498 * 109.47159 * 240.00363 * 9 7 5 13 13 S 1.65595 * 120.00216 * 96.21820 * 3 2 1 14 14 O 1.42100 * 106.40381 * 328.82318 * 13 3 2 15 15 O 1.42101 * 106.40491 * 195.89871 * 13 3 2 16 16 N 1.65603 * 107.21973 * 82.35955 * 13 3 2 17 17 C 1.46505 * 119.99767 * 65.39275 * 16 13 3 18 18 H 1.09002 * 109.46947 * 333.93561 * 17 16 13 19 19 C 1.52993 * 109.47234 * 93.93904 * 17 16 13 20 20 C 1.52997 * 109.46970 * 213.94088 * 17 16 13 21 21 H 1.09000 * 109.48095 * 177.05770 * 20 17 16 22 22 C 1.53087 * 109.49308 * 57.02336 * 20 17 16 23 23 C 1.53177 * 109.16501 * 182.40356 * 22 20 17 24 24 C 1.53176 * 109.03469 * 56.98207 * 23 22 20 25 25 C 1.53092 * 109.16331 * 303.01837 * 24 23 22 26 26 O 1.42897 * 109.41382 * 57.61126 * 25 24 23 27 27 H 1.08999 * 109.47464 * 185.03566 * 1 2 3 28 28 H 1.08998 * 109.47040 * 305.03225 * 1 2 3 29 29 H 1.09002 * 109.47112 * 65.02888 * 1 2 3 30 30 H 1.09003 * 109.47161 * 239.99512 * 2 1 3 31 31 H 1.09006 * 109.47083 * 119.99887 * 2 1 3 32 32 H 1.09000 * 109.47233 * 40.06593 * 4 3 2 33 33 H 1.08999 * 109.47024 * 160.06705 * 4 3 2 34 34 H 0.97000 * 120.00038 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00262 * 245.38952 * 16 13 3 36 36 H 1.09007 * 109.47239 * 299.99754 * 19 17 16 37 37 H 1.08992 * 109.47458 * 59.99857 * 19 17 16 38 38 H 1.08997 * 109.47319 * 180.02562 * 19 17 16 39 39 H 1.09007 * 109.51821 * 62.49712 * 22 20 17 40 40 H 1.08996 * 109.52475 * 302.31574 * 22 20 17 41 41 H 1.09007 * 109.54187 * 297.11310 * 23 22 20 42 42 H 1.09005 * 109.54376 * 176.84898 * 23 22 20 43 43 H 1.09000 * 109.52179 * 62.92569 * 24 23 22 44 44 H 1.09004 * 109.51937 * 183.11235 * 24 23 22 45 45 H 1.09006 * 109.47757 * 177.59047 * 25 24 23 46 46 H 1.08996 * 109.48297 * 297.62558 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1330 2.1176 -1.2613 5 6 3.3991 1.7081 -1.9688 6 1 4.0162 0.9220 -1.5596 7 6 3.7695 2.3372 -3.1384 8 7 3.0182 3.2948 -3.6364 9 14 5.3392 1.8302 -4.0150 10 1 5.9997 0.7384 -3.2554 11 1 5.0106 1.3528 -5.3822 12 1 6.2548 2.9958 -4.1044 13 16 2.4408 2.1100 1.4256 14 8 1.6047 1.5473 2.4273 15 8 2.5048 3.5045 1.1599 16 7 3.9853 1.6307 1.7824 17 6 5.0955 2.0312 0.9144 18 1 4.7218 2.2115 -0.0936 19 6 5.7324 3.3113 1.4587 20 6 6.1424 0.9161 0.8782 21 1 6.9432 1.1914 0.1919 22 6 5.4879 -0.3840 0.4039 23 6 6.5278 -1.5084 0.4279 24 6 7.1008 -1.6288 1.8433 25 6 7.6931 -0.2807 2.2621 26 8 6.6817 0.7261 2.1879 27 1 -0.3634 -1.0237 0.0902 28 1 -0.3633 0.5899 0.8415 29 1 -0.3633 0.4338 -0.9316 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.2742 1.8915 -1.8934 33 1 2.1613 3.1877 -1.0560 34 1 3.2790 3.7376 -4.4591 35 1 4.1549 1.0849 2.5661 36 1 4.9865 4.1058 1.4844 37 1 6.1061 3.1311 2.4666 38 1 6.5581 3.6095 0.8127 39 1 5.1149 -0.2543 -0.6121 40 1 4.6609 -0.6384 1.0667 41 1 7.3307 -1.2774 -0.2722 42 1 6.0546 -2.4487 0.1448 43 1 6.3064 -1.9084 2.5353 44 1 7.8813 -2.3896 1.8567 45 1 8.0641 -0.3486 3.2848 46 1 8.5141 -0.0210 1.5939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336891201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:10 Heat of formation + Delta-G solvation = -143.076733 kcal Electronic energy + Delta-G solvation = -28261.389826 eV Core-core repulsion = 24505.139300 eV Total energy + Delta-G solvation = -3756.250526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.50250 -36.61037 -36.07581 -35.52121 -35.10674 -33.52460 -32.75738 -30.70400 -29.91762 -29.02258 -26.65023 -25.15365 -23.51184 -23.12687 -21.68752 -20.97769 -20.10336 -18.80079 -17.22864 -16.75084 -16.65301 -16.20612 -15.89588 -15.36576 -14.68667 -14.56849 -14.52120 -14.11530 -13.77251 -13.61825 -13.34359 -13.04029 -12.85791 -12.54456 -12.45673 -12.07516 -11.94232 -11.73922 -11.66571 -11.51026 -11.29481 -11.24933 -11.14287 -11.08789 -11.01373 -10.97354 -10.88436 -10.58174 -10.50943 -10.28658 -10.13310 -9.98245 -9.63794 -9.33102 -8.94531 -8.55254 -8.04512 -6.16801 -4.23525 1.38247 3.18287 3.26030 3.28138 3.60555 3.86109 4.27591 4.30172 4.78131 4.85110 4.93477 5.06714 5.14952 5.15665 5.25427 5.37316 5.42925 5.51694 5.62796 5.71128 5.76103 5.81485 5.85827 5.86209 5.92204 5.98345 6.05272 6.11555 6.16527 6.26738 6.33053 6.35955 6.45932 6.63229 6.70066 6.74950 6.78988 7.34641 7.36608 7.41373 7.54084 7.72164 7.82599 8.12205 8.82097 9.41845 10.90890 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009618 B = 0.007663 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.391328 B = 3652.829272 C = 4973.026075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.543 4.543 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.782 3.218 14 O -1.003 7.003 15 O -0.978 6.978 16 N -1.119 6.119 17 C 0.151 3.849 18 H 0.132 0.868 19 C -0.165 4.165 20 C 0.091 3.909 21 H 0.065 0.935 22 C -0.153 4.153 23 C -0.123 4.123 24 C -0.155 4.155 25 C 0.062 3.938 26 O -0.376 6.376 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.409 0.591 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -8.701 8.233 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 N -0.834 5.834 4 C 0.119 3.881 5 C -0.582 4.582 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.713 3.287 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.208 1.208 13 S 2.790 3.210 14 O -0.987 6.987 15 O -0.961 6.961 16 N -0.877 5.877 17 C 0.044 3.956 18 H 0.150 0.850 19 C -0.224 4.224 20 C 0.032 3.968 21 H 0.082 0.918 22 C -0.190 4.190 23 C -0.160 4.160 24 C -0.193 4.193 25 C -0.015 4.015 26 O -0.295 6.295 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.979 -7.734 8.577 13.005 hybrid contribution 1.371 -1.021 -0.828 1.899 sum 7.349 -8.755 7.749 13.809 Atomic orbital electron populations 1.22198 0.97007 1.01200 1.02458 1.20924 0.93649 0.82961 1.01801 1.57742 1.78472 1.22774 1.24425 1.19230 0.97283 0.92517 0.79035 1.21634 1.08129 1.20243 1.08218 0.91354 1.24954 0.96862 0.94719 0.97113 1.69937 1.37747 1.23448 1.20937 0.86652 0.83526 0.78647 0.79924 1.19461 1.20937 1.20763 1.01868 0.72675 0.73838 0.72630 1.93543 1.65680 1.80251 1.59247 1.93579 1.86534 1.30849 1.85145 1.55971 1.24616 1.69551 1.37560 1.21173 0.85828 0.92181 0.96423 0.85025 1.22200 1.01160 0.97612 1.01411 1.22385 0.95220 0.94952 0.84281 0.91757 1.22262 0.98582 0.94399 1.03791 1.21600 0.98895 0.99295 0.96227 1.22190 1.01154 0.98065 0.97909 1.22495 0.90197 0.87439 1.01370 1.87906 1.55210 1.56624 1.29737 0.92581 0.92507 0.92162 0.90275 0.92311 0.94810 0.92522 0.92561 0.75808 0.91203 0.92144 0.92254 0.89224 0.90826 0.92129 0.91649 0.91174 0.91501 0.89384 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.23 37.16 0.38 -2.28 16 2 C 0.13 2.23 6.04 -4.04 -0.02 2.21 16 3 N -0.99 -19.56 2.84 -115.66 -0.33 -19.89 16 4 C 0.24 5.68 5.44 -5.19 -0.03 5.65 16 5 C -0.54 -13.02 7.28 -34.44 -0.25 -13.27 16 6 H 0.07 1.52 5.35 -52.49 -0.28 1.24 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.88 -24.21 13.29 55.43 0.74 -23.47 16 9 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 S 2.78 54.86 5.97 -107.50 -0.64 54.22 16 14 O -1.00 -20.73 17.30 -57.17 -0.99 -21.72 16 15 O -0.98 -22.61 15.67 -57.17 -0.90 -23.51 16 16 N -1.12 -18.53 4.62 -4.89 -0.02 -18.56 16 17 C 0.15 2.55 2.66 -67.93 -0.18 2.37 16 18 H 0.13 2.58 5.20 -51.93 -0.27 2.31 16 19 C -0.16 -2.68 9.34 37.15 0.35 -2.33 16 20 C 0.09 1.33 2.46 -26.69 -0.07 1.26 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 22 C -0.15 -2.15 5.26 -26.59 -0.14 -2.29 16 23 C -0.12 -1.43 6.03 -26.55 -0.16 -1.59 16 24 C -0.16 -1.58 6.14 -26.59 -0.16 -1.74 16 25 C 0.06 0.67 6.84 37.20 0.25 0.92 16 26 O -0.38 -5.14 9.23 -35.23 -0.33 -5.46 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.94 8.07 -51.93 -0.42 0.53 16 29 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 32 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.06 1.50 6.77 -51.93 -0.35 1.15 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.41 6.03 8.43 -34.47 -0.29 5.74 16 36 H 0.07 1.25 7.52 -51.92 -0.39 0.86 16 37 H 0.06 0.91 7.61 -51.93 -0.40 0.51 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.43 6.14 -51.93 -0.32 1.11 16 40 H 0.07 1.02 7.40 -51.93 -0.38 0.64 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -29.42 369.15 -9.76 -39.18 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.71 Total: 8.74 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -0.13 Total: -9.48 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.39 Total: -61.93 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -2.21 Total: -50.69 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.64 Total: 54.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.42 -9.76 -39.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336891201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.896 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds