Wall clock time and date at job start Tue Mar 31 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46791 * 2 1 4 4 C 1.46505 * 120.00130 * 274.99880 * 3 2 1 5 5 C 1.50696 * 109.46993 * 282.79128 * 4 3 2 6 6 H 1.08000 * 120.00781 * 4.46410 * 5 4 3 7 7 C 1.37884 * 120.00009 * 184.46532 * 5 4 3 8 8 N 1.31516 * 119.99608 * 6.02404 * 7 5 4 9 9 Si 1.86796 * 120.00495 * 186.03261 * 7 5 4 10 10 H 1.48509 * 109.46978 * 4.91541 * 9 7 5 11 11 H 1.48493 * 109.47432 * 124.91311 * 9 7 5 12 12 H 1.48500 * 109.47076 * 244.91703 * 9 7 5 13 13 S 1.65603 * 120.00103 * 95.00524 * 3 2 1 14 14 O 1.42100 * 106.39973 * 331.07870 * 13 3 2 15 15 O 1.42094 * 106.40136 * 198.16096 * 13 3 2 16 16 N 1.65596 * 107.21987 * 84.61900 * 13 3 2 17 17 C 1.46503 * 120.00293 * 294.67619 * 16 13 3 18 18 H 1.09000 * 109.46795 * 25.97712 * 17 16 13 19 19 C 1.52995 * 109.46947 * 265.98110 * 17 16 13 20 20 C 1.52993 * 109.47385 * 145.97865 * 17 16 13 21 21 H 1.08998 * 109.49145 * 180.67557 * 20 17 16 22 22 C 1.53089 * 109.48068 * 300.70465 * 20 17 16 23 23 C 1.53179 * 109.16755 * 177.58921 * 22 20 17 24 24 C 1.53177 * 109.03756 * 303.02161 * 23 22 20 25 25 C 1.53098 * 109.16067 * 56.97615 * 24 23 22 26 26 O 1.42898 * 109.48279 * 60.64483 * 20 17 16 27 27 H 1.09001 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46651 * 299.99504 * 1 2 3 29 29 H 1.08996 * 109.47067 * 60.00072 * 1 2 3 30 30 H 1.09004 * 109.46874 * 240.00000 * 2 1 3 31 31 H 1.08996 * 109.47067 * 119.99928 * 2 1 3 32 32 H 1.08999 * 109.46818 * 42.79506 * 4 3 2 33 33 H 1.09004 * 109.46915 * 162.79278 * 4 3 2 34 34 H 0.97001 * 119.99959 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00015 * 114.67516 * 16 13 3 36 36 H 1.08998 * 109.47083 * 185.29434 * 19 17 16 37 37 H 1.09000 * 109.47070 * 305.28665 * 19 17 16 38 38 H 1.08997 * 109.47701 * 65.28978 * 19 17 16 39 39 H 1.09000 * 109.52389 * 57.68639 * 22 20 17 40 40 H 1.08998 * 109.52397 * 297.49895 * 22 20 17 41 41 H 1.08999 * 109.54899 * 183.14663 * 23 22 20 42 42 H 1.09010 * 109.53741 * 62.88960 * 23 22 20 43 43 H 1.09003 * 109.52239 * 176.87808 * 24 23 22 44 44 H 1.08994 * 109.51807 * 297.07095 * 24 23 22 45 45 H 1.09004 * 109.48120 * 62.37670 * 25 24 23 46 46 H 1.09001 * 109.47712 * 182.41027 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4038 1.6459 -1.9747 6 1 3.9897 0.8360 -1.5657 7 6 3.7956 2.2563 -3.1473 8 7 3.1520 3.3171 -3.5832 9 14 5.2402 1.5764 -4.1169 10 1 5.7136 0.3192 -3.4838 11 1 4.8132 1.2979 -5.5116 12 1 6.3424 2.5716 -4.1261 13 16 2.4122 2.1202 1.4287 14 8 1.5932 1.5265 2.4266 15 8 2.4292 3.5167 1.1667 16 7 3.9712 1.6929 1.7881 17 6 4.2979 0.2960 2.0855 18 1 3.5739 -0.3578 1.5993 19 6 4.2517 0.0725 3.5983 20 6 5.7014 -0.0213 1.5657 21 1 5.9400 -1.0638 1.7761 22 6 5.7526 0.2192 0.0546 23 6 7.1756 -0.0425 -0.4483 24 6 8.1497 0.8585 0.3171 25 6 8.0058 0.5932 1.8181 26 8 6.6525 0.8255 2.2139 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.2885 1.9161 -1.8921 33 1 2.2310 3.1774 -1.0619 34 1 3.4278 3.7468 -4.4080 35 1 4.6681 2.3674 1.8017 36 1 4.5855 -0.9398 3.8263 37 1 4.9064 0.7907 4.0919 38 1 3.2304 0.2072 3.9546 39 1 5.4747 1.2511 -0.1596 40 1 5.0594 -0.4571 -0.4456 41 1 7.2328 0.1807 -1.5136 42 1 7.4357 -1.0875 -0.2790 43 1 9.1707 0.6393 0.0047 44 1 7.9201 1.9033 0.1082 45 1 8.2746 -0.4413 2.0318 46 1 8.6660 1.2621 2.3703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336891202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:13 Heat of formation + Delta-G solvation = -140.651657 kcal Electronic energy + Delta-G solvation = -28246.275698 eV Core-core repulsion = 24490.130331 eV Total energy + Delta-G solvation = -3756.145366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.53575 -36.68336 -36.04647 -35.65231 -35.13887 -33.47063 -32.68526 -30.72855 -29.91476 -29.16606 -26.61986 -25.19316 -23.52862 -23.13950 -21.64069 -21.14855 -20.05783 -18.91570 -17.12522 -16.77554 -16.62210 -16.43689 -15.81142 -15.37575 -14.76021 -14.51053 -14.39305 -14.22871 -13.76010 -13.70417 -13.32739 -13.17252 -12.89424 -12.61994 -12.50648 -12.08753 -11.92565 -11.83674 -11.67807 -11.46575 -11.41944 -11.30935 -11.20165 -11.05656 -11.03023 -10.96540 -10.81298 -10.59957 -10.45004 -10.28675 -10.13203 -9.98760 -9.67369 -9.30084 -9.02706 -8.46824 -8.02379 -6.09796 -4.14119 1.36203 3.21545 3.29243 3.31236 3.55099 3.79291 4.25678 4.35732 4.70469 4.93615 5.00344 5.02329 5.07312 5.13472 5.23733 5.27654 5.30948 5.49881 5.50571 5.52874 5.69214 5.69995 5.79040 5.84121 5.85982 5.99048 6.04756 6.12043 6.12934 6.27041 6.30544 6.34868 6.41825 6.50605 6.67854 6.71088 6.76919 7.28981 7.32475 7.45006 7.55501 7.72547 7.88936 8.19633 8.90877 9.50513 10.98606 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.008700 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.203728 B = 3217.751466 C = 5337.980498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.991 5.991 4 C 0.244 3.756 5 C -0.537 4.537 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.885 3.115 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.284 1.284 13 S 2.783 3.217 14 O -0.999 6.999 15 O -0.980 6.980 16 N -1.115 6.115 17 C 0.167 3.833 18 H 0.090 0.910 19 C -0.167 4.167 20 C 0.089 3.911 21 H 0.061 0.939 22 C -0.154 4.154 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.066 3.934 26 O -0.374 6.374 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.418 0.582 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 -9.507 9.352 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.833 5.833 4 C 0.122 3.878 5 C -0.577 4.577 6 H 0.090 0.910 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.210 1.210 13 S 2.791 3.209 14 O -0.982 6.982 15 O -0.964 6.964 16 N -0.874 5.874 17 C 0.059 3.941 18 H 0.108 0.892 19 C -0.226 4.226 20 C 0.030 3.970 21 H 0.079 0.921 22 C -0.192 4.192 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.011 4.011 26 O -0.293 6.293 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.366 -8.798 9.851 14.256 hybrid contribution 1.571 -0.494 -1.340 2.123 sum 6.937 -9.292 8.511 14.384 Atomic orbital electron populations 1.22204 0.96893 1.01299 1.02549 1.21037 0.93875 0.83150 1.01728 1.57737 1.78630 1.22742 1.24170 1.19211 0.97089 0.92724 0.78808 1.21718 1.09792 1.18568 1.07592 0.90957 1.24944 0.96703 0.94567 0.97651 1.69961 1.41045 1.19293 1.22360 0.86658 0.82685 0.79238 0.80084 1.19370 1.21192 1.21049 1.01811 0.73009 0.73087 0.73004 1.93540 1.66819 1.79302 1.58557 1.93592 1.86498 1.30897 1.85438 1.55977 1.29660 1.15109 1.86658 1.20709 0.94743 0.82806 0.95858 0.89220 1.22260 1.03189 1.01694 0.95495 1.22399 0.88650 0.93354 0.92620 0.92091 1.22372 0.96715 1.05744 0.94365 1.21583 0.95182 0.98731 1.00453 1.22205 0.99645 1.01606 0.96110 1.22500 0.83763 1.00204 0.94658 1.87882 1.15316 1.60821 1.65244 0.92502 0.92435 0.92075 0.90089 0.92353 0.95158 0.92490 0.92776 0.74778 0.92271 0.91424 0.91307 0.88389 0.90379 0.91407 0.92577 0.91488 0.90710 0.93708 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.24 37.16 0.38 -2.24 16 2 C 0.13 2.11 5.71 -4.04 -0.02 2.09 16 3 N -0.99 -19.58 2.85 -115.66 -0.33 -19.91 16 4 C 0.24 5.87 5.51 -5.19 -0.03 5.84 16 5 C -0.54 -13.30 8.99 -34.44 -0.31 -13.61 16 6 H 0.07 1.65 5.08 -52.49 -0.27 1.38 16 7 C 0.06 1.69 5.45 -17.82 -0.10 1.59 16 8 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 9 Si 0.89 20.09 29.54 -169.99 -5.02 15.06 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 S 2.78 54.61 5.99 -107.50 -0.64 53.97 16 14 O -1.00 -19.96 16.41 -57.17 -0.94 -20.90 16 15 O -0.98 -23.12 16.54 -57.17 -0.95 -24.07 16 16 N -1.11 -18.28 4.69 -4.89 -0.02 -18.31 16 17 C 0.17 2.32 2.63 -67.93 -0.18 2.14 16 18 H 0.09 1.19 5.65 -51.93 -0.29 0.89 16 19 C -0.17 -2.11 9.29 37.16 0.35 -1.77 16 20 C 0.09 1.16 2.44 -26.69 -0.07 1.10 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.15 -2.32 4.27 -26.59 -0.11 -2.43 16 23 C -0.12 -1.65 6.03 -26.55 -0.16 -1.81 16 24 C -0.16 -1.90 6.14 -26.59 -0.16 -2.06 16 25 C 0.07 0.73 6.84 37.21 0.25 0.98 16 26 O -0.37 -4.99 9.33 -35.23 -0.33 -5.32 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.93 8.00 -51.93 -0.42 0.51 16 29 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 30 H 0.08 1.32 7.99 -51.93 -0.41 0.90 16 31 H 0.06 0.83 5.79 -51.93 -0.30 0.53 16 32 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.06 1.56 6.73 -51.93 -0.35 1.21 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.42 6.76 8.41 -34.47 -0.29 6.47 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.87 7.83 -51.93 -0.41 0.46 16 38 H 0.07 0.94 7.63 -51.93 -0.40 0.54 16 39 H 0.10 1.76 6.76 -51.93 -0.35 1.41 16 40 H 0.08 1.20 7.28 -51.93 -0.38 0.82 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -30.76 368.44 -9.74 -40.50 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.64 Total: 8.00 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -0.16 Total: -10.19 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.38 Total: -62.61 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -2.21 Total: -50.28 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 54.61 SS G_CDS: -0.64 Total: 53.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.76 -9.74 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336891202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.147 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds