Wall clock time and date at job start Tue Mar 31 2020 13:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47069 * 2 1 4 4 C 1.46505 * 119.99674 * 275.00064 * 3 2 1 5 5 C 1.50696 * 109.47026 * 280.56769 * 4 3 2 6 6 H 1.08006 * 119.99851 * 4.55655 * 5 4 3 7 7 C 1.37877 * 120.00155 * 184.55311 * 5 4 3 8 8 N 1.31516 * 119.99652 * 5.51319 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 185.50623 * 7 5 4 10 10 H 1.48503 * 109.47280 * 65.00120 * 9 7 5 11 11 H 1.48500 * 109.47123 * 185.00017 * 9 7 5 12 12 H 1.48505 * 109.47305 * 304.99903 * 9 7 5 13 13 S 1.65596 * 120.00307 * 94.99732 * 3 2 1 14 14 O 1.42102 * 106.40249 * 145.56211 * 13 3 2 15 15 O 1.42095 * 106.40317 * 12.64244 * 13 3 2 16 16 N 1.65606 * 107.21766 * 259.10082 * 13 3 2 17 17 C 1.46496 * 119.99894 * 62.00171 * 16 13 3 18 18 H 1.09000 * 109.54309 * 7.51829 * 17 16 13 19 19 C 1.53180 * 109.61401 * 247.30236 * 17 16 13 20 20 C 1.53095 * 109.16107 * 183.10739 * 19 17 16 21 21 O 1.42897 * 109.41770 * 57.61144 * 20 19 17 22 22 C 1.42907 * 114.09330 * 298.83644 * 21 20 19 23 23 C 1.52997 * 109.48236 * 301.17777 * 22 21 20 24 24 C 1.53006 * 109.49069 * 181.14602 * 22 21 20 25 25 C 1.53099 * 109.41431 * 61.16302 * 22 21 20 26 26 H 1.09005 * 109.46455 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47149 * 299.99771 * 1 2 3 28 28 H 1.08996 * 109.47010 * 60.00236 * 1 2 3 29 29 H 1.09001 * 109.47527 * 239.99558 * 2 1 3 30 30 H 1.09002 * 109.47424 * 119.99725 * 2 1 3 31 31 H 1.08997 * 109.47026 * 40.57044 * 4 3 2 32 32 H 1.09004 * 109.47185 * 160.57338 * 4 3 2 33 33 H 0.97008 * 119.99575 * 179.97438 * 8 7 5 34 34 H 0.96999 * 119.99878 * 241.99539 * 16 13 3 35 35 H 1.09000 * 109.52366 * 303.01400 * 19 17 16 36 36 H 1.09004 * 109.52233 * 63.20096 * 19 17 16 37 37 H 1.08994 * 109.48180 * 297.62099 * 20 19 17 38 38 H 1.09005 * 109.48374 * 177.59721 * 20 19 17 39 39 H 1.09002 * 109.46933 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.47037 * 299.94241 * 23 22 21 41 41 H 1.08999 * 109.47062 * 59.94300 * 23 22 21 42 42 H 1.09000 * 109.47007 * 300.05726 * 24 22 21 43 43 H 1.09002 * 109.46614 * 60.05352 * 24 22 21 44 44 H 1.08993 * 109.46900 * 180.02562 * 24 22 21 45 45 H 1.09002 * 109.52048 * 182.48604 * 25 22 21 46 46 H 1.08996 * 109.57386 * 62.32195 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4320 1.6853 -1.9489 6 1 4.0358 0.8959 -1.5260 7 6 3.8267 2.3056 -3.1152 8 7 3.1515 3.3377 -3.5720 9 14 5.3204 1.6804 -4.0465 10 1 5.0503 0.3108 -4.5532 11 1 5.6047 2.5841 -5.1901 12 1 6.4936 1.6491 -3.1367 13 16 2.4121 2.1203 1.4286 14 8 3.5099 2.9776 1.1476 15 8 2.4584 1.0950 2.4114 16 7 1.1438 3.1034 1.8378 17 6 -0.1781 2.5257 2.0929 18 1 -0.1058 1.4381 2.0982 19 6 -1.1530 2.9691 0.9978 20 6 -2.5478 2.4240 1.3160 21 8 -2.9569 2.8885 2.6040 22 6 -2.1089 2.4648 3.6733 23 6 -2.0638 0.9360 3.7138 24 6 -2.6570 2.9944 5.0001 25 6 -0.6964 3.0115 3.4500 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.3077 1.8849 -1.9079 32 1 2.1914 3.1798 -1.0650 33 1 3.4294 3.7743 -4.3925 34 1 1.2762 4.0617 1.9087 35 1 -1.1874 4.0579 0.9597 36 1 -0.8208 2.5803 0.0351 37 1 -2.5214 1.3344 1.3139 38 1 -3.2547 2.7720 0.5627 39 1 -1.4166 0.6131 4.5292 40 1 -3.0695 0.5470 3.8728 41 1 -1.6736 0.5589 2.7684 42 1 -2.6895 4.0835 4.9709 43 1 -3.6627 2.6050 5.1589 44 1 -2.0098 2.6714 5.8153 45 1 -0.0378 2.6530 4.2410 46 1 -0.7205 4.1012 3.4618 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336937314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:37 Heat of formation + Delta-G solvation = -131.729160 kcal Electronic energy + Delta-G solvation = -27772.670186 eV Core-core repulsion = 24016.911728 eV Total energy + Delta-G solvation = -3755.758458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23615 -36.71630 -36.14385 -35.56045 -35.18845 -33.72928 -32.68787 -30.93430 -29.97347 -27.93625 -27.48389 -26.63599 -23.92757 -23.20533 -21.97098 -21.74924 -19.57225 -18.68765 -17.44633 -16.86391 -16.52823 -16.31444 -16.18648 -15.41598 -15.21813 -14.83754 -14.48326 -14.36066 -13.98971 -13.60967 -13.40818 -13.19291 -12.93769 -12.64809 -12.30878 -12.23896 -12.13236 -11.94921 -11.85375 -11.72821 -11.56961 -11.46397 -11.39713 -11.32554 -11.26560 -11.22589 -10.98822 -10.88063 -10.53172 -10.39939 -10.09503 -10.00946 -9.81028 -9.59052 -9.29712 -8.44700 -8.10670 -6.08202 -4.11151 1.22437 3.32043 3.36265 3.39631 3.44430 3.63903 4.09291 4.43207 4.48792 4.63433 4.67672 4.82682 4.93815 4.95010 5.07751 5.19146 5.25410 5.26579 5.39944 5.41589 5.49054 5.56584 5.58774 5.62476 5.65899 5.68360 5.77352 5.83495 5.91774 5.93313 6.02138 6.07602 6.12442 6.27069 6.32102 6.55755 6.61527 7.11759 7.16394 7.23606 7.39966 7.60685 7.90374 8.19901 8.90801 9.53639 11.00472 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.004112 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.965276 B = 6808.050945 C = 7073.447877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 N -0.990 5.990 4 C 0.260 3.740 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.777 3.223 14 O -0.966 6.966 15 O -1.000 7.000 16 N -1.127 6.127 17 C 0.150 3.850 18 H 0.096 0.904 19 C -0.173 4.173 20 C 0.060 3.940 21 O -0.374 6.374 22 C 0.113 3.887 23 C -0.185 4.185 24 C -0.136 4.136 25 C -0.151 4.151 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.563 -2.711 12.784 18.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.010 4.010 3 N -0.832 5.832 4 C 0.138 3.862 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.786 3.214 14 O -0.950 6.950 15 O -0.984 6.984 16 N -0.883 5.883 17 C 0.043 3.957 18 H 0.114 0.886 19 C -0.213 4.213 20 C -0.017 4.017 21 O -0.293 6.293 22 C 0.073 3.927 23 C -0.242 4.242 24 C -0.194 4.194 25 C -0.190 4.190 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.911 -2.774 13.141 18.630 hybrid contribution 0.815 0.128 -1.023 1.315 sum -12.096 -2.646 12.118 17.325 Atomic orbital electron populations 1.22544 0.97673 1.01759 1.02052 1.21141 0.92936 0.83347 1.03581 1.57702 1.81071 1.21312 1.23156 1.18999 0.97046 0.91213 0.78934 1.21437 1.07708 1.19823 1.07888 0.92117 1.24929 0.97041 0.94525 0.97475 1.69917 1.40615 1.20418 1.22433 0.86579 0.83108 0.78631 0.79259 1.20260 1.21214 1.20005 1.02060 0.73192 0.73128 0.73063 1.93649 1.49113 1.67425 1.84781 1.93517 1.86874 1.58448 1.59517 1.56263 1.24008 1.21320 1.86733 1.20898 0.82531 0.98230 0.94085 0.88618 1.22752 0.95253 1.03063 1.00215 1.22598 0.95495 0.98606 0.84998 1.87954 1.51453 1.75147 1.14774 1.21464 0.89411 0.93521 0.88298 1.22521 1.02835 0.95651 1.03184 1.21747 1.01549 1.01850 0.94220 1.22588 0.96358 1.02262 0.97794 0.92022 0.93014 0.91687 0.89546 0.90581 0.95279 0.94280 0.92655 0.75494 0.90341 0.89311 0.92639 0.88546 0.91111 0.91646 0.91711 0.91797 0.91795 0.91069 0.90175 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.55 37.16 0.35 -2.04 16 2 C 0.12 1.95 6.31 -4.04 -0.03 1.93 16 3 N -0.99 -19.76 2.84 -115.66 -0.33 -20.09 16 4 C 0.26 6.26 5.20 -5.19 -0.03 6.24 16 5 C -0.53 -14.55 9.28 -34.44 -0.32 -14.87 16 6 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 7 C 0.06 1.75 5.45 -17.82 -0.10 1.66 16 8 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 S 2.78 54.38 5.88 -107.50 -0.63 53.75 16 14 O -0.97 -23.22 17.42 -57.17 -1.00 -24.21 16 15 O -1.00 -20.21 16.15 -57.17 -0.92 -21.13 16 16 N -1.13 -16.90 5.45 -4.74 -0.03 -16.92 16 17 C 0.15 1.93 2.27 -67.75 -0.15 1.77 16 18 H 0.10 1.26 3.48 -51.93 -0.18 1.08 16 19 C -0.17 -2.07 5.08 -26.59 -0.14 -2.21 16 20 C 0.06 0.63 6.51 37.21 0.24 0.87 16 21 O -0.37 -4.27 10.24 -35.23 -0.36 -4.63 16 22 C 0.11 1.15 1.11 -90.57 -0.10 1.05 16 23 C -0.18 -1.73 7.93 37.16 0.29 -1.44 16 24 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 25 C -0.15 -1.67 4.53 -26.59 -0.12 -1.79 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.63 3.35 -51.93 -0.17 0.46 16 28 H 0.06 0.88 7.88 -51.93 -0.41 0.48 16 29 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 30 H 0.08 1.23 6.88 -51.93 -0.36 0.87 16 31 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.04 1.02 7.72 -51.93 -0.40 0.61 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.41 5.54 8.96 -34.47 -0.31 5.23 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.15 7.16 -51.93 -0.37 0.77 16 37 H 0.06 0.53 6.14 -51.93 -0.32 0.22 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.63 4.68 -51.93 -0.24 0.39 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -33.09 364.18 -9.20 -42.29 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.38 Total: 3.59 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 0.24 Total: -9.65 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.38 Total: -62.06 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -2.28 Total: -49.98 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 54.38 SS G_CDS: -0.63 Total: 53.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.09 -9.20 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336937314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.436 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds