Wall clock time and date at job start Tue Mar 31 2020 13:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47405 * 2 1 4 4 C 1.46506 * 119.99858 * 274.99961 * 3 2 1 5 5 C 1.50700 * 109.47208 * 279.69726 * 4 3 2 6 6 H 1.08003 * 119.99885 * 356.79521 * 5 4 3 7 7 C 1.37870 * 120.00076 * 176.80000 * 5 4 3 8 8 N 1.31520 * 120.00379 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00036 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47401 * 90.00414 * 9 7 5 11 11 H 1.48504 * 109.47591 * 210.00442 * 9 7 5 12 12 H 1.48501 * 109.47170 * 330.00493 * 9 7 5 13 13 S 1.65597 * 119.99959 * 95.00330 * 3 2 1 14 14 O 1.42101 * 106.39921 * 196.89473 * 13 3 2 15 15 O 1.42102 * 106.40164 * 329.80894 * 13 3 2 16 16 N 1.65588 * 107.22215 * 83.35378 * 13 3 2 17 17 C 1.46507 * 120.00050 * 65.80076 * 16 13 3 18 18 C 1.52999 * 109.46890 * 162.40329 * 17 16 13 19 19 C 1.53008 * 109.46895 * 180.02562 * 18 17 16 20 20 H 1.08993 * 109.47951 * 55.02002 * 19 18 17 21 21 C 1.53095 * 109.47712 * 175.05719 * 19 18 17 22 22 C 1.53182 * 109.15810 * 177.59232 * 21 19 18 23 23 C 1.53182 * 109.03246 * 303.01765 * 22 21 19 24 24 C 1.53090 * 109.16489 * 56.98256 * 23 22 21 25 25 O 1.42897 * 109.47645 * 294.99905 * 19 18 17 26 26 H 1.08998 * 109.47130 * 59.99824 * 1 2 3 27 27 H 1.08994 * 109.47429 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47160 * 300.00140 * 1 2 3 29 29 H 1.09002 * 109.47160 * 239.99860 * 2 1 3 30 30 H 1.08998 * 109.47130 * 120.00176 * 2 1 3 31 31 H 1.08997 * 109.46896 * 39.69734 * 4 3 2 32 32 H 1.08998 * 109.47148 * 159.69563 * 4 3 2 33 33 H 0.96996 * 120.00221 * 179.97438 * 8 7 5 34 34 H 0.97005 * 119.99974 * 245.80070 * 16 13 3 35 35 H 1.09004 * 109.46783 * 282.39846 * 17 16 13 36 36 H 1.08999 * 109.46871 * 42.40164 * 17 16 13 37 37 H 1.09002 * 109.47206 * 299.99870 * 18 17 16 38 38 H 1.08999 * 109.47498 * 60.00219 * 18 17 16 39 39 H 1.08995 * 109.52211 * 297.49328 * 21 19 18 40 40 H 1.08993 * 109.52420 * 57.68723 * 21 19 18 41 41 H 1.09001 * 109.54079 * 183.14965 * 22 21 19 42 42 H 1.08999 * 109.61862 * 62.92974 * 22 21 19 43 43 H 1.08996 * 109.52326 * 297.07003 * 23 22 21 44 44 H 1.09001 * 109.56885 * 176.92207 * 23 22 21 45 45 H 1.08999 * 109.47753 * 182.40417 * 24 23 22 46 46 H 1.09000 * 109.48533 * 62.38099 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2640 5 6 3.4427 1.7010 -1.9386 6 1 4.1150 1.0122 -1.4487 7 6 3.7596 2.2075 -3.1812 8 7 4.8808 1.8522 -3.7698 9 14 2.5965 3.3983 -4.0287 10 1 2.9478 4.7897 -3.6468 11 1 2.7161 3.2440 -5.5009 12 1 1.2009 3.1081 -3.6124 13 16 2.4123 2.1201 1.4287 14 8 2.4586 3.5147 1.1596 15 8 1.5722 1.5476 2.4215 16 7 3.9591 1.6650 1.8058 17 6 5.0749 2.0872 0.9554 18 6 6.3891 1.9294 1.7227 19 6 7.5543 2.3709 0.8348 20 1 7.3772 3.3865 0.4811 21 6 8.8548 2.3303 1.6416 22 6 10.0241 2.7154 0.7300 23 6 10.0551 1.7651 -0.4710 24 6 8.7082 1.8275 -1.1961 25 8 7.6616 1.4885 -0.2841 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3157 1.8729 -1.9140 32 1 2.1759 3.1804 -1.0663 33 1 5.1035 2.2082 -4.6441 34 1 4.1265 1.1189 2.5898 35 1 5.1017 1.4691 0.0579 36 1 4.9418 3.1316 0.6735 37 1 6.3622 2.5474 2.6202 38 1 6.5221 0.8849 2.0046 39 1 8.7914 3.0355 2.4703 40 1 9.0115 1.3239 2.0296 41 1 10.9597 2.6344 1.2834 42 1 9.8942 3.7399 0.3812 43 1 10.2362 0.7473 -0.1257 44 1 10.8504 2.0650 -1.1534 45 1 8.7096 1.1216 -2.0266 46 1 8.5465 2.8360 -1.5766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:11 Heat of formation + Delta-G solvation = -141.042793 kcal Electronic energy + Delta-G solvation = -27053.524623 eV Core-core repulsion = 23297.362295 eV Total energy + Delta-G solvation = -3756.162327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.22783 -36.69664 -36.13307 -35.46040 -35.23294 -33.43342 -32.57068 -32.11247 -30.16695 -28.33172 -27.08227 -24.65018 -23.16070 -22.87326 -21.54649 -21.18192 -20.12869 -18.72333 -17.25084 -16.88832 -16.68847 -16.16696 -15.95258 -15.57556 -14.94658 -14.46409 -14.38989 -14.17663 -14.00735 -13.64427 -13.44136 -13.32274 -12.73292 -12.53358 -12.41720 -12.23269 -12.00254 -11.95218 -11.75279 -11.53683 -11.39457 -11.35668 -11.27457 -11.11867 -11.01411 -10.91563 -10.77902 -10.53265 -10.44281 -10.33118 -10.07415 -10.02825 -9.55587 -9.15354 -8.79851 -8.58634 -8.06317 -6.08565 -4.08503 1.29160 3.29213 3.35487 3.39725 3.52743 4.07586 4.16028 4.39868 4.73199 4.86543 4.91698 5.01692 5.10052 5.23251 5.32775 5.34105 5.40256 5.49247 5.57799 5.66966 5.73309 5.78094 5.82434 5.83065 5.90682 5.95413 6.04286 6.06186 6.07727 6.17633 6.28871 6.30036 6.36282 6.51443 6.60626 6.67611 6.80031 6.92312 7.19625 7.32656 7.54692 7.61222 7.63397 8.47549 8.96033 9.51666 11.02588 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.005468 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.378729 B = 5119.434745 C = 6874.561195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.986 5.986 4 C 0.211 3.789 5 C -0.538 4.538 6 H 0.087 0.913 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.864 3.136 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.264 1.264 13 S 2.788 3.212 14 O -0.984 6.984 15 O -1.000 7.000 16 N -1.131 6.131 17 C 0.118 3.882 18 C -0.115 4.115 19 C 0.091 3.909 20 H 0.060 0.940 21 C -0.149 4.149 22 C -0.122 4.122 23 C -0.157 4.157 24 C 0.066 3.934 25 O -0.362 6.362 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.262 0.738 34 H 0.405 0.595 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 -1.537 8.936 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.087 3.913 5 C -0.577 4.577 6 H 0.105 0.895 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.691 3.309 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.189 1.189 13 S 2.795 3.205 14 O -0.967 6.967 15 O -0.984 6.984 16 N -0.889 5.889 17 C -0.007 4.007 18 C -0.154 4.154 19 C 0.033 3.967 20 H 0.078 0.922 21 C -0.187 4.187 22 C -0.159 4.159 23 C -0.195 4.195 24 C -0.011 4.011 25 O -0.280 6.280 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.237 0.763 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.680 -0.950 9.059 10.734 hybrid contribution 0.144 0.369 -0.535 0.666 sum 5.824 -0.581 8.523 10.340 Atomic orbital electron populations 1.22222 0.97006 1.01476 1.02322 1.20974 0.93445 0.82558 1.02511 1.57486 1.78878 1.23087 1.23259 1.19621 0.98258 0.92267 0.81108 1.21471 1.04172 1.29035 1.03026 0.89521 1.24807 0.94887 0.95840 0.96920 1.69909 1.22989 1.43942 1.15691 0.87042 0.82411 0.82425 0.79017 1.19933 1.21214 1.18911 1.01619 0.72659 0.73627 0.72553 1.93556 1.86751 1.31164 1.85252 1.93552 1.65497 1.79898 1.59456 1.55931 1.25251 1.69499 1.38266 1.21444 0.83783 1.01714 0.93782 1.21778 0.93375 1.02510 0.97699 1.21998 0.93450 0.94143 0.87154 0.92163 1.22212 0.95490 1.02372 0.98587 1.21579 0.98237 0.99466 0.96662 1.22233 0.98936 1.00340 0.97964 1.22487 0.85455 1.01306 0.91860 1.88055 1.52919 1.52398 1.34643 0.92322 0.92260 0.92447 0.89758 0.91916 0.94775 0.93857 0.92771 0.76270 0.88267 0.90675 0.90658 0.90863 0.91220 0.91203 0.91962 0.91882 0.91370 0.91300 0.88671 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.15 0.38 -2.27 16 2 C 0.13 2.27 6.03 -4.04 -0.02 2.25 16 3 N -0.99 -19.86 2.84 -115.66 -0.33 -20.19 16 4 C 0.21 4.90 4.54 -5.19 -0.02 4.88 16 5 C -0.54 -13.93 9.43 -34.44 -0.32 -14.25 16 6 H 0.09 2.37 6.25 -52.48 -0.33 2.04 16 7 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 9 Si 0.86 20.65 27.53 -169.99 -4.68 15.97 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.26 -6.08 6.45 56.52 0.36 -5.72 16 13 S 2.79 54.42 6.07 -107.50 -0.65 53.77 16 14 O -0.98 -22.26 15.95 -57.17 -0.91 -23.17 16 15 O -1.00 -20.03 17.17 -57.17 -0.98 -21.01 16 16 N -1.13 -18.53 6.04 -10.61 -0.06 -18.59 16 17 C 0.12 2.08 6.09 -4.04 -0.02 2.05 16 18 C -0.11 -1.59 5.08 -26.73 -0.14 -1.73 16 19 C 0.09 1.31 2.64 -26.68 -0.07 1.24 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.15 -1.67 5.42 -26.59 -0.14 -1.82 16 22 C -0.12 -1.29 6.03 -26.54 -0.16 -1.45 16 23 C -0.16 -1.80 6.14 -26.59 -0.16 -1.96 16 24 C 0.07 0.98 6.84 37.20 0.25 1.23 16 25 O -0.36 -6.24 9.94 -35.23 -0.35 -6.59 16 26 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 29 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 30 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16 31 H 0.03 0.78 6.93 -51.93 -0.36 0.42 16 32 H 0.04 1.06 6.37 -51.93 -0.33 0.73 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.41 5.40 8.67 -34.46 -0.30 5.10 16 35 H 0.10 2.05 5.53 -51.93 -0.29 1.77 16 36 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -31.44 373.51 -10.01 -41.45 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.91 Total: 6.93 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.53 Total: -9.80 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.38 Total: -63.18 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -2.24 Total: -50.77 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.68 Total: 15.97 kcal Atomic # 16 Polarization: 54.42 SS G_CDS: -0.65 Total: 53.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.44 -10.01 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.598 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds