Wall clock time and date at job start Tue Mar 31 2020 13:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99670 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47541 * 59.99940 * 9 7 5 11 11 H 1.48500 * 109.47151 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47258 * 299.99974 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.53001 * 109.47089 * 164.71987 * 17 16 13 19 19 C 1.53003 * 109.47264 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.47729 * 304.98051 * 19 18 17 21 21 C 1.53087 * 109.48157 * 184.94500 * 19 18 17 22 22 C 1.53182 * 109.16342 * 182.40809 * 21 19 18 23 23 C 1.53176 * 109.03154 * 56.98235 * 22 21 19 24 24 C 1.53091 * 109.16346 * 303.01328 * 23 22 21 25 25 O 1.42897 * 109.47910 * 65.00003 * 19 18 17 26 26 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 28 28 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 29 29 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 31 31 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 32 32 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 33 33 H 0.96999 * 119.99728 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 35 35 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 36 36 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 37 37 H 1.08996 * 109.47377 * 299.99842 * 18 17 16 38 38 H 1.09005 * 109.46627 * 60.00018 * 18 17 16 39 39 H 1.09003 * 109.52138 * 302.31816 * 21 19 18 40 40 H 1.09002 * 109.52129 * 62.50352 * 21 19 18 41 41 H 1.08994 * 109.54218 * 297.11270 * 22 21 19 42 42 H 1.09000 * 109.54246 * 176.84741 * 22 21 19 43 43 H 1.09003 * 109.51557 * 183.11698 * 23 22 21 44 44 H 1.08992 * 109.57888 * 62.95538 * 23 22 21 45 45 H 1.08997 * 109.48273 * 297.63425 * 24 23 22 46 46 H 1.09001 * 109.47889 * 177.59463 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 3.0285 3.1868 -3.6911 9 14 5.5093 1.9641 -3.8513 10 1 5.5986 0.5043 -4.1085 11 1 5.6518 2.7024 -5.1318 12 1 6.5948 2.3703 -2.9229 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.4075 2.2641 1.4856 19 6 7.4739 2.8314 0.5465 20 1 7.4239 2.3170 -0.4132 21 6 8.8595 2.6264 1.1644 22 6 9.9162 3.2500 0.2474 23 6 9.5858 4.7312 0.0395 24 6 8.1721 4.8549 -0.5350 25 8 7.2427 4.2279 0.3512 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1802 -1.0757 33 1 3.2803 3.5893 -4.5369 34 1 4.2771 1.2773 2.4782 35 1 5.0449 1.7849 -0.1128 36 1 4.8084 3.4005 0.5956 37 1 6.3980 2.8364 2.4131 38 1 6.6346 1.2207 1.7047 39 1 8.8968 3.1062 2.1424 40 1 9.0555 1.5597 1.2733 41 1 9.9129 2.7372 -0.7143 42 1 10.8996 3.1570 0.7083 43 1 10.3012 5.1698 -0.6561 44 1 9.6380 5.2546 0.9942 45 1 8.1315 4.3670 -1.5088 46 1 7.9154 5.9085 -0.6450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:14 Heat of formation + Delta-G solvation = -145.203572 kcal Electronic energy + Delta-G solvation = -27155.287330 eV Core-core repulsion = 23398.944578 eV Total energy + Delta-G solvation = -3756.342752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.36187 -36.58396 -36.02452 -35.43761 -35.10197 -33.57062 -32.71025 -32.16871 -29.89975 -28.39021 -26.60754 -24.74344 -23.25251 -23.11666 -21.73714 -21.22467 -20.23557 -18.68321 -17.04515 -16.83569 -16.47277 -16.26694 -15.98058 -15.46637 -15.03168 -14.56261 -14.50481 -14.27967 -13.93409 -13.63836 -13.56257 -13.23362 -12.88174 -12.66147 -12.28736 -12.06927 -12.01108 -11.81438 -11.60493 -11.47651 -11.36721 -11.24366 -11.22158 -11.07040 -11.03297 -10.98414 -10.91572 -10.62518 -10.46041 -10.37542 -10.15895 -9.98388 -9.75609 -9.26330 -8.75503 -8.49040 -8.01698 -6.10891 -4.16898 1.40854 3.21490 3.27433 3.28600 3.64121 3.92393 4.25759 4.34044 4.67355 4.76301 4.82190 4.93891 5.16987 5.22467 5.25840 5.30525 5.44640 5.46671 5.47736 5.57994 5.70122 5.75659 5.78711 5.80636 5.84668 5.89432 5.93695 6.01192 6.10831 6.13706 6.25051 6.27499 6.36224 6.52437 6.69568 6.70895 6.79635 7.36036 7.41723 7.45112 7.53812 7.73625 7.87485 8.16311 8.85797 9.47610 10.97134 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.005491 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.820718 B = 5097.838295 C = 6625.249488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.993 5.993 4 C 0.244 3.756 5 C -0.540 4.540 6 H 0.066 0.934 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.787 3.213 14 O -1.004 7.004 15 O -0.979 6.979 16 N -1.131 6.131 17 C 0.112 3.888 18 C -0.116 4.116 19 C 0.090 3.910 20 H 0.064 0.936 21 C -0.149 4.149 22 C -0.123 4.123 23 C -0.156 4.156 24 C 0.059 3.941 25 O -0.369 6.369 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 -3.330 7.535 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.122 3.878 5 C -0.579 4.579 6 H 0.084 0.916 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.795 3.205 14 O -0.989 6.989 15 O -0.963 6.963 16 N -0.890 5.890 17 C -0.013 4.013 18 C -0.155 4.155 19 C 0.031 3.969 20 H 0.082 0.918 21 C -0.186 4.186 22 C -0.161 4.161 23 C -0.193 4.193 24 C -0.018 4.018 25 O -0.288 6.288 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.235 0.765 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.343 -2.459 7.819 12.429 hybrid contribution 1.657 -0.786 -0.698 1.962 sum 11.000 -3.245 7.121 13.499 Atomic orbital electron populations 1.22208 0.97038 1.01299 1.02377 1.20947 0.93586 0.82969 1.02010 1.57722 1.78676 1.22857 1.24190 1.19191 0.97202 0.92353 0.79078 1.21544 1.02286 1.28064 1.06054 0.91628 1.24911 0.96978 0.94826 0.96857 1.69916 1.35909 1.29566 1.17029 0.86739 0.84534 0.78412 0.78800 1.20282 1.21227 1.19918 1.01646 0.72618 0.73682 0.72563 1.93535 1.70720 1.76379 1.58226 1.93575 1.85898 1.31133 1.85671 1.55950 1.25857 1.68484 1.38665 1.21595 0.85707 1.01143 0.92886 1.21796 0.94094 1.00698 0.98884 1.22074 0.93337 0.82970 0.98508 0.91790 1.22209 0.95318 1.01303 0.99808 1.21590 0.98617 0.95819 1.00055 1.22198 0.98047 0.96981 1.02108 1.22556 0.88074 0.98542 0.92656 1.87990 1.52920 1.21582 1.66332 0.92436 0.92672 0.92097 0.90309 0.91984 0.94441 0.93077 0.92559 0.76476 0.88975 0.89594 0.90922 0.90446 0.91104 0.91006 0.91829 0.91742 0.91197 0.91192 0.93108 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.13 2.30 6.06 -4.05 -0.02 2.27 16 3 N -0.99 -20.48 2.82 -115.67 -0.33 -20.81 16 4 C 0.24 5.98 5.43 -5.19 -0.03 5.95 16 5 C -0.54 -13.58 8.06 -34.44 -0.28 -13.86 16 6 H 0.07 1.56 5.82 -52.49 -0.31 1.26 16 7 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 9 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 S 2.79 56.58 6.10 -107.50 -0.66 55.92 16 14 O -1.00 -20.80 17.11 -57.17 -0.98 -21.78 16 15 O -0.98 -23.59 16.15 -57.17 -0.92 -24.51 16 16 N -1.13 -18.99 6.05 -10.61 -0.06 -19.06 16 17 C 0.11 1.99 5.79 -4.04 -0.02 1.96 16 18 C -0.12 -1.61 5.07 -26.73 -0.14 -1.74 16 19 C 0.09 1.28 2.64 -26.68 -0.07 1.21 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 21 C -0.15 -1.65 5.42 -26.59 -0.14 -1.79 16 22 C -0.12 -1.28 6.03 -26.55 -0.16 -1.44 16 23 C -0.16 -1.66 6.14 -26.59 -0.16 -1.83 16 24 C 0.06 0.80 6.84 37.20 0.25 1.05 16 25 O -0.37 -6.02 9.94 -35.23 -0.35 -6.37 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.06 0.97 7.61 -51.93 -0.40 0.57 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.40 5.45 8.65 -34.47 -0.30 5.15 16 35 H 0.09 1.78 4.86 -51.93 -0.25 1.52 16 36 H 0.09 1.78 7.42 -51.93 -0.39 1.39 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -31.36 375.30 -10.31 -41.67 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.89 Total: 7.38 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.49 Total: -8.88 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.35 Total: -64.00 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -2.25 Total: -52.66 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 56.58 SS G_CDS: -0.66 Total: 55.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.36 -10.31 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.531 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds