Wall clock time and date at job start Tue Mar 31 2020 13:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46495 * 119.99753 * 275.00325 * 3 2 1 5 5 C 1.50698 * 109.47121 * 84.99977 * 4 3 2 6 6 H 1.07997 * 120.00111 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99987 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99629 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47395 * 60.00170 * 9 7 5 11 11 H 1.48510 * 109.46958 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47345 * 299.99715 * 9 7 5 13 13 S 1.65602 * 120.00006 * 94.99676 * 3 2 1 14 14 O 1.42097 * 106.40599 * 203.54158 * 13 3 2 15 15 O 1.42097 * 106.40158 * 336.46648 * 13 3 2 16 16 N 1.65602 * 107.21332 * 90.00139 * 13 3 2 17 17 C 1.46503 * 120.00021 * 65.00374 * 16 13 3 18 18 H 1.09006 * 109.47015 * 24.99164 * 17 16 13 19 19 C 1.53001 * 109.47061 * 264.99764 * 17 16 13 20 20 C 1.53003 * 109.47048 * 299.99724 * 19 17 16 21 21 C 1.52998 * 109.46905 * 300.00244 * 20 19 17 22 22 C 1.53001 * 109.47466 * 60.00013 * 21 20 19 23 23 C 1.52998 * 109.47288 * 144.99278 * 17 16 13 24 24 H 1.09001 * 109.46849 * 179.97438 * 23 17 16 25 25 O 1.42896 * 109.47515 * 300.00153 * 23 17 16 26 26 C 1.42896 * 114.00104 * 209.99669 * 25 23 17 27 27 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 28 28 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 31 31 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 32 32 H 1.09002 * 109.46665 * 204.99493 * 4 3 2 33 33 H 1.08998 * 109.47564 * 324.99734 * 4 3 2 34 34 H 0.97007 * 119.99956 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00248 * 244.99391 * 16 13 3 36 36 H 1.09003 * 109.47222 * 59.99592 * 19 17 16 37 37 H 1.08998 * 109.46992 * 179.97438 * 19 17 16 38 38 H 1.09002 * 109.47073 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47088 * 60.00226 * 20 19 17 40 40 H 1.09006 * 109.47020 * 299.99653 * 21 20 19 41 41 H 1.08997 * 109.46803 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.46990 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.46992 * 59.99733 * 22 21 20 44 44 H 1.09003 * 109.47282 * 60.00202 * 26 25 23 45 45 H 1.08997 * 109.47112 * 179.97438 * 26 25 23 46 46 H 1.09001 * 109.47192 * 300.00299 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 0.8360 2.7288 -1.6355 6 1 -0.0228 2.5942 -0.9946 7 6 0.7225 3.4681 -2.7938 8 7 1.7684 3.6325 -3.5740 9 14 -0.9166 4.2362 -3.2548 10 1 -1.3408 5.1763 -2.1863 11 1 -0.7745 4.9748 -4.5354 12 1 -1.9375 3.1690 -3.4091 13 16 2.4122 2.1203 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4415 2.4448 16 7 4.0144 1.8137 1.7137 17 6 5.0351 2.3524 0.8114 18 1 4.6477 3.2418 0.3143 19 6 5.3962 1.2986 -0.2375 20 6 5.9399 0.0501 0.4602 21 6 7.1884 0.4183 1.2642 22 6 6.8274 1.4721 2.3130 23 6 6.2837 2.7205 1.6154 24 1 7.0432 3.1210 0.9439 25 8 5.9465 3.7048 2.5949 26 6 7.0186 4.5914 2.9211 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.9079 2.8918 -1.1512 33 1 2.4689 1.4183 -2.0481 34 1 1.6887 4.1529 -4.3888 35 1 4.2771 1.2775 2.4781 36 1 4.5066 1.0364 -0.8102 37 1 6.1552 1.6996 -0.9091 38 1 6.1967 -0.7008 -0.2870 39 1 5.1805 -0.3507 1.1315 40 1 7.9479 0.8191 0.5928 41 1 7.5760 -0.4712 1.7608 42 1 7.7168 1.7339 2.8861 43 1 6.0680 1.0712 2.9844 44 1 7.3345 5.1249 2.0246 45 1 6.6824 5.3080 3.6703 46 1 7.8569 4.0178 3.3167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337095118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:17 Heat of formation + Delta-G solvation = -136.705227 kcal Electronic energy + Delta-G solvation = -27846.707664 eV Core-core repulsion = 24090.733427 eV Total energy + Delta-G solvation = -3755.974236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.62771 -36.67330 -36.46186 -35.96427 -34.99717 -33.36912 -32.54916 -30.24071 -29.72580 -28.88083 -26.68233 -26.40294 -22.78242 -22.61849 -22.19287 -21.79760 -19.98764 -18.53229 -17.33242 -16.77152 -16.56804 -16.34063 -15.81289 -15.46711 -15.11908 -14.70304 -14.62986 -14.28435 -13.78280 -13.61345 -13.22926 -13.04625 -12.86719 -12.59292 -12.43212 -12.26047 -12.12392 -11.77262 -11.67294 -11.42055 -11.32028 -11.25492 -11.11044 -10.99250 -10.94615 -10.92988 -10.73438 -10.64418 -10.42987 -10.39380 -10.28922 -9.85412 -9.57569 -9.45057 -9.09829 -8.39173 -8.02933 -6.02597 -4.04709 1.36515 3.36275 3.39712 3.44994 3.59772 3.75330 4.28842 4.48748 4.62033 4.67480 4.88570 5.07187 5.13113 5.16619 5.24593 5.30690 5.31827 5.34710 5.39483 5.49541 5.53351 5.57415 5.63424 5.75389 5.85964 5.90970 5.94648 5.99473 6.04589 6.11948 6.19188 6.26732 6.37901 6.44995 6.50152 6.75770 7.03528 7.18143 7.23394 7.37047 7.48492 7.71606 7.96018 8.26607 8.97003 9.59713 11.06014 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.004934 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.247523 B = 5673.223169 C = 6028.507133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.138 3.862 3 N -0.994 5.994 4 C 0.259 3.741 5 C -0.523 4.523 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 S 2.781 3.219 14 O -0.963 6.963 15 O -1.000 7.000 16 N -1.119 6.119 17 C 0.160 3.840 18 H 0.101 0.899 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.140 4.140 23 C 0.087 3.913 24 H 0.070 0.930 25 O -0.374 6.374 26 C 0.030 3.970 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.155 -6.948 8.604 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 S 2.788 3.212 14 O -0.946 6.946 15 O -0.985 6.985 16 N -0.878 5.878 17 C 0.052 3.948 18 H 0.118 0.882 19 C -0.179 4.179 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.178 4.178 23 C 0.027 3.973 24 H 0.088 0.912 25 O -0.292 6.292 26 C -0.067 4.067 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.399 -6.203 8.903 16.476 hybrid contribution -0.186 0.089 -0.356 0.411 sum 12.212 -6.115 8.547 16.112 Atomic orbital electron populations 1.22260 0.96541 1.00717 1.03634 1.20908 0.94702 0.82347 1.00918 1.57799 1.78568 1.22906 1.24357 1.19029 0.97440 0.90803 0.79033 1.21501 0.96418 1.31708 1.06651 0.92013 1.24907 0.96742 0.96037 0.96286 1.69899 1.29239 1.40767 1.13734 0.86632 0.84036 0.79562 0.77660 1.20079 1.21294 1.20251 1.01977 0.72567 0.73912 0.72702 1.93622 1.85264 1.30474 1.85262 1.93531 1.70319 1.76395 1.58212 1.56140 1.25197 1.68398 1.38016 1.20805 0.87961 0.96680 0.89395 0.88154 1.22119 1.02872 0.95454 0.97487 1.21494 0.97087 0.97669 0.99257 1.21512 0.98136 0.98236 0.97518 1.22005 1.01042 0.95990 0.98748 1.22375 0.96344 0.88529 0.90018 0.91159 1.88029 1.36506 1.44728 1.59940 1.22789 0.90446 0.93214 1.00251 0.92891 0.90312 0.93230 0.91222 0.92262 0.94592 0.94843 0.92779 0.76000 0.89374 0.90811 0.91775 0.91595 0.91934 0.91867 0.91914 0.91053 0.94003 0.89766 0.94462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.83 37.16 0.37 -2.71 16 2 C 0.14 2.37 6.09 -4.04 -0.02 2.34 16 3 N -0.99 -20.02 2.53 -115.66 -0.29 -20.31 16 4 C 0.26 6.19 3.98 -5.20 -0.02 6.17 16 5 C -0.52 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.70 6.89 -52.49 -0.36 1.34 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 S 2.78 56.47 6.03 -107.50 -0.65 55.83 16 14 O -0.96 -23.87 16.45 -57.17 -0.94 -24.81 16 15 O -1.00 -21.49 17.11 -57.17 -0.98 -22.47 16 16 N -1.12 -17.38 4.66 -4.89 -0.02 -17.40 16 17 C 0.16 2.33 2.83 -67.93 -0.19 2.14 16 18 H 0.10 1.75 7.13 -51.93 -0.37 1.38 16 19 C -0.14 -1.77 5.64 -26.73 -0.15 -1.93 16 20 C -0.12 -1.20 5.77 -26.73 -0.15 -1.36 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 22 C -0.14 -1.39 5.35 -26.73 -0.14 -1.53 16 23 C 0.09 1.06 2.37 -26.73 -0.06 1.00 16 24 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 25 O -0.37 -5.27 10.21 -35.23 -0.36 -5.63 16 26 C 0.03 0.31 10.82 101.05 1.09 1.40 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 31 H 0.06 0.89 7.61 -51.93 -0.40 0.50 16 32 H 0.04 0.91 7.24 -51.93 -0.38 0.54 16 33 H 0.03 0.81 8.00 -51.93 -0.42 0.39 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.41 5.44 6.81 -34.47 -0.23 5.20 16 36 H 0.09 1.28 6.60 -51.93 -0.34 0.94 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.69 7.45 -51.93 -0.39 0.31 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 43 H 0.07 0.74 6.51 -51.93 -0.34 0.40 16 44 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -33.42 369.34 -9.51 -42.93 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.71 Total: 3.05 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 0.16 Total: -8.64 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.42 Total: -62.60 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -2.28 Total: -52.90 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 56.47 SS G_CDS: -0.65 Total: 55.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.42 -9.51 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337095118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.780 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds