Wall clock time and date at job start Tue Mar 31 2020 13:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47104 * 2 1 4 4 C 1.46500 * 120.00173 * 84.99631 * 3 2 1 5 5 C 1.50706 * 109.46949 * 275.00151 * 4 3 2 6 6 H 1.07999 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99394 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00338 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99426 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47361 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47264 * 120.00115 * 9 7 5 12 12 H 1.48500 * 109.46969 * 239.99720 * 9 7 5 13 13 S 1.65597 * 119.99794 * 264.99986 * 3 2 1 14 14 O 1.42106 * 106.40336 * 23.53860 * 13 3 2 15 15 O 1.42093 * 106.40447 * 156.45718 * 13 3 2 16 16 N 1.65598 * 107.21711 * 269.99827 * 13 3 2 17 17 C 1.46506 * 120.00055 * 65.00286 * 16 13 3 18 18 H 1.08998 * 109.46929 * 334.99768 * 17 16 13 19 19 C 1.52997 * 109.47138 * 94.99673 * 17 16 13 20 20 C 1.53006 * 109.47063 * 60.00275 * 19 17 16 21 21 C 1.53000 * 109.47162 * 59.99612 * 20 19 17 22 22 C 1.53000 * 109.47105 * 300.00081 * 21 20 19 23 23 C 1.53000 * 109.47001 * 215.00008 * 17 16 13 24 24 H 1.08991 * 109.47287 * 179.97438 * 23 17 16 25 25 O 1.42899 * 109.47050 * 59.99322 * 23 17 16 26 26 C 1.42904 * 113.99606 * 150.00052 * 25 23 17 27 27 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47166 * 300.00165 * 1 2 3 29 29 H 1.08998 * 109.46891 * 60.00816 * 1 2 3 30 30 H 1.08999 * 109.47166 * 239.99835 * 2 1 3 31 31 H 1.08998 * 109.46891 * 119.99184 * 2 1 3 32 32 H 1.09000 * 109.46609 * 155.00330 * 4 3 2 33 33 H 1.09000 * 109.47175 * 35.00125 * 4 3 2 34 34 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00018 * 244.99682 * 16 13 3 36 36 H 1.08998 * 109.46586 * 179.97438 * 19 17 16 37 37 H 1.08993 * 109.47311 * 300.00073 * 19 17 16 38 38 H 1.08995 * 109.47079 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46929 * 299.99690 * 20 19 17 40 40 H 1.09002 * 109.47134 * 60.00204 * 21 20 19 41 41 H 1.08998 * 109.47082 * 179.97438 * 21 20 19 42 42 H 1.09007 * 109.46983 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47225 * 300.00068 * 22 21 20 44 44 H 1.08995 * 109.47280 * 60.00533 * 26 25 23 45 45 H 1.09002 * 109.46984 * 180.02562 * 26 25 23 46 46 H 1.08992 * 109.47188 * 299.99778 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1088 1.2639 5 6 0.8359 2.7289 1.6355 6 1 -0.0229 2.5942 0.9945 7 6 0.7226 3.4683 2.7937 8 7 1.7682 3.6319 3.5745 9 14 -0.9167 4.2363 3.2547 10 1 -1.9272 3.9058 2.2180 11 1 -1.3612 3.7035 4.5676 12 1 -0.7645 5.7107 3.3448 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3057 3.5185 -1.2000 16 7 4.0144 1.8137 -1.7137 17 6 4.4658 0.4412 -1.9568 18 1 3.7683 -0.2577 -1.4953 19 6 4.5244 0.1830 -3.4637 20 6 5.5035 1.1642 -4.1116 21 6 6.8952 0.9703 -3.5063 22 6 6.8366 1.2285 -1.9994 23 6 5.8575 0.2473 -1.3516 24 1 6.1931 -0.7738 -1.5320 25 8 5.8027 0.4886 0.0558 26 6 6.7540 -0.2635 0.8119 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.9080 2.8919 1.1512 33 1 2.4689 1.4184 2.0481 34 1 1.6882 4.1517 4.3895 35 1 4.6541 2.5429 -1.7197 36 1 4.8606 -0.8379 -3.6445 37 1 3.5329 0.3212 -3.8948 38 1 5.5456 0.9800 -5.1850 39 1 5.1677 2.1853 -3.9307 40 1 7.2311 -0.0508 -3.6872 41 1 7.5928 1.6689 -3.9682 42 1 7.8282 1.0908 -1.5683 43 1 6.5008 2.2496 -1.8185 44 1 7.7616 -0.0117 0.4814 45 1 6.6479 -0.0244 1.8700 46 1 6.5776 -1.3285 0.6610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337095120.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:20 Heat of formation + Delta-G solvation = -135.726267 kcal Electronic energy + Delta-G solvation = -27785.957239 eV Core-core repulsion = 24030.025454 eV Total energy + Delta-G solvation = -3755.931785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.68944 -36.71946 -36.40199 -35.92267 -35.03029 -33.43368 -32.50328 -30.28295 -29.71583 -28.93114 -26.64912 -26.38408 -22.85635 -22.58815 -22.28180 -21.75891 -20.02353 -18.61183 -17.26252 -16.75787 -16.63795 -16.32117 -15.88929 -15.49542 -15.09348 -14.71772 -14.66043 -14.24819 -13.77721 -13.61733 -13.26735 -13.02911 -12.91996 -12.66631 -12.48474 -12.33483 -12.12814 -11.72070 -11.69592 -11.39470 -11.35044 -11.24216 -11.14492 -11.10274 -10.93861 -10.88576 -10.78017 -10.72551 -10.45405 -10.34931 -10.28853 -9.82193 -9.56465 -9.43861 -9.14250 -8.35165 -7.95365 -5.97092 -3.99580 1.38380 3.35713 3.43414 3.48370 3.56012 3.75323 4.25637 4.51564 4.52836 4.62098 4.83372 5.01156 5.02760 5.07783 5.15988 5.23552 5.29911 5.32565 5.37172 5.37918 5.47460 5.53085 5.65260 5.74525 5.80621 5.89335 5.91136 5.93132 6.01525 6.03188 6.16380 6.22547 6.24886 6.35493 6.50793 6.79669 7.05846 7.20533 7.28928 7.43398 7.58268 7.78027 8.01294 8.32738 9.02915 9.64419 11.11549 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.004767 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.327104 B = 5871.945154 C = 6412.947474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 N -0.988 5.988 4 C 0.263 3.737 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.283 1.283 13 S 2.780 3.220 14 O -0.998 6.998 15 O -0.968 6.968 16 N -1.119 6.119 17 C 0.165 3.835 18 H 0.087 0.913 19 C -0.137 4.137 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.142 4.142 23 C 0.084 3.916 24 H 0.067 0.933 25 O -0.367 6.367 26 C 0.031 3.969 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.087 0.913 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.960 -10.885 -11.323 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.831 5.831 4 C 0.141 3.859 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.209 1.209 13 S 2.788 3.212 14 O -0.982 6.982 15 O -0.952 6.952 16 N -0.877 5.877 17 C 0.056 3.944 18 H 0.105 0.895 19 C -0.176 4.176 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.180 4.180 23 C 0.025 3.975 24 H 0.085 0.915 25 O -0.285 6.285 26 C -0.066 4.066 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.245 0.755 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.106 0.894 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.173 -10.310 -11.616 19.133 hybrid contribution -0.031 0.384 0.661 0.765 sum 11.142 -9.926 -10.955 18.512 Atomic orbital electron populations 1.22265 0.96484 1.00692 1.03674 1.20956 0.94703 0.82586 1.00757 1.57676 1.78325 1.22716 1.24338 1.18981 0.97135 0.90897 0.78911 1.21610 0.96465 1.31501 1.06602 0.91969 1.24924 0.96684 0.96141 0.96347 1.69940 1.29136 1.40845 1.13648 0.86525 0.84075 0.79200 0.78133 1.19686 1.21103 1.20937 1.01963 0.72790 0.73318 0.73108 1.93527 1.70657 1.76493 1.57503 1.93630 1.85294 1.30645 1.85658 1.56223 1.29456 1.13612 1.88423 1.20708 0.95182 0.83759 0.94743 0.89545 1.22071 1.01439 0.99479 0.94619 1.21518 0.94454 1.00450 0.99400 1.21512 0.97418 1.01650 0.94810 1.22016 0.99363 1.01071 0.95549 1.22368 0.95124 0.98057 0.81979 0.91459 1.88106 1.57416 1.66125 1.16822 1.22791 0.91834 0.94840 0.97100 0.93238 0.90291 0.92855 0.92531 0.91180 0.94532 0.94826 0.92937 0.75517 0.91107 0.89635 0.91796 0.91417 0.92020 0.91728 0.91719 0.90761 0.94519 0.89407 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.83 37.16 0.37 -2.74 16 2 C 0.14 2.43 5.79 -4.04 -0.02 2.40 16 3 N -0.99 -20.84 2.86 -115.66 -0.33 -21.17 16 4 C 0.26 6.70 5.12 -5.19 -0.03 6.68 16 5 C -0.52 -14.74 8.41 -34.44 -0.29 -15.03 16 6 H 0.06 1.76 6.89 -52.49 -0.36 1.40 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 S 2.78 56.34 5.95 -107.50 -0.64 55.70 16 14 O -1.00 -20.60 16.37 -57.17 -0.94 -21.54 16 15 O -0.97 -23.90 17.11 -57.17 -0.98 -24.88 16 16 N -1.12 -17.30 4.66 -4.89 -0.02 -17.33 16 17 C 0.16 2.09 2.70 -67.93 -0.18 1.90 16 18 H 0.09 1.12 6.22 -51.93 -0.32 0.80 16 19 C -0.14 -1.47 5.64 -26.73 -0.15 -1.62 16 20 C -0.12 -1.16 5.77 -26.73 -0.15 -1.32 16 21 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 22 C -0.14 -1.40 5.35 -26.73 -0.14 -1.54 16 23 C 0.08 0.94 2.37 -26.73 -0.06 0.87 16 24 H 0.07 0.61 7.78 -51.93 -0.40 0.21 16 25 O -0.37 -5.02 10.21 -35.23 -0.36 -5.38 16 26 C 0.03 0.32 10.82 101.05 1.09 1.42 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.60 6.59 -51.93 -0.34 1.26 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16 31 H 0.07 1.17 8.00 -51.93 -0.42 0.75 16 32 H 0.04 1.01 7.61 -51.93 -0.40 0.62 16 33 H 0.03 0.88 8.00 -51.93 -0.42 0.46 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.41 5.94 6.81 -34.47 -0.23 5.70 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.07 7.64 -51.93 -0.40 0.67 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.58 7.87 -51.92 -0.41 0.17 16 43 H 0.07 0.82 6.51 -51.93 -0.34 0.48 16 44 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -34.09 369.32 -9.48 -43.57 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.67 Total: 2.58 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 0.17 Total: -8.46 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.38 Total: -64.31 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -2.27 Total: -51.80 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 56.34 SS G_CDS: -0.64 Total: 55.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.09 -9.48 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337095120.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.152 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds