Wall clock time and date at job start Tue Mar 31 2020 13:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47248 * 2 1 4 4 C 1.46494 * 120.00169 * 274.94274 * 3 2 1 5 5 C 1.50698 * 109.47200 * 283.63367 * 4 3 2 6 6 H 1.08010 * 119.99909 * 4.86993 * 5 4 3 7 7 C 1.37877 * 120.00498 * 184.87060 * 5 4 3 8 8 N 1.31518 * 119.99800 * 4.81852 * 7 5 4 9 9 Si 1.86800 * 120.00397 * 184.82307 * 7 5 4 10 10 H 1.48504 * 109.47252 * 85.62422 * 9 7 5 11 11 H 1.48497 * 109.47232 * 205.62250 * 9 7 5 12 12 H 1.48498 * 109.47076 * 325.62638 * 9 7 5 13 13 S 1.65599 * 119.99662 * 94.94343 * 3 2 1 14 14 O 1.42098 * 106.40400 * 329.90210 * 13 3 2 15 15 O 1.42100 * 106.40028 * 196.98165 * 13 3 2 16 16 N 1.65601 * 107.21930 * 83.44206 * 13 3 2 17 17 C 1.46495 * 119.99929 * 66.04609 * 16 13 3 18 18 H 1.08999 * 109.47423 * 336.59256 * 17 16 13 19 19 C 1.53002 * 109.47326 * 96.59578 * 17 16 13 20 20 C 1.52998 * 109.47332 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47158 * 300.00078 * 20 19 17 22 22 C 1.52998 * 109.47571 * 59.99803 * 21 20 19 23 23 C 1.53005 * 109.47072 * 216.59357 * 17 16 13 24 24 H 1.08996 * 109.47299 * 299.99865 * 23 17 16 25 25 O 1.42901 * 109.47032 * 60.00379 * 23 17 16 26 26 C 1.42901 * 113.99635 * 210.00299 * 25 23 17 27 27 H 1.09001 * 109.47692 * 185.06553 * 1 2 3 28 28 H 1.09008 * 109.46535 * 305.06597 * 1 2 3 29 29 H 1.08996 * 109.47147 * 65.06037 * 1 2 3 30 30 H 1.09000 * 109.46866 * 240.00035 * 2 1 3 31 31 H 1.09000 * 109.46993 * 120.00456 * 2 1 3 32 32 H 1.08997 * 109.47036 * 43.63472 * 4 3 2 33 33 H 1.08998 * 109.47081 * 163.63510 * 4 3 2 34 34 H 0.96994 * 120.00049 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00081 * 245.77265 * 16 13 3 36 36 H 1.09008 * 109.46831 * 299.99962 * 19 17 16 37 37 H 1.08999 * 109.47133 * 59.99500 * 19 17 16 38 38 H 1.09009 * 109.47307 * 59.99749 * 20 19 17 39 39 H 1.09003 * 109.47225 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47218 * 180.02562 * 21 20 19 41 41 H 1.09006 * 109.47127 * 299.99671 * 21 20 19 42 42 H 1.09006 * 109.47003 * 59.99792 * 22 21 20 43 43 H 1.08991 * 109.47344 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.47485 * 59.99290 * 26 25 23 45 45 H 1.09002 * 109.47065 * 179.97438 * 26 25 23 46 46 H 1.09005 * 109.46441 * 299.99327 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1595 2.1082 -1.2639 5 6 3.3946 1.6303 -1.9832 6 1 3.9690 0.8083 -1.5821 7 6 3.7914 2.2424 -3.1532 8 7 3.1482 3.3026 -3.5915 9 14 5.2423 1.5659 -4.1158 10 1 4.7750 0.4861 -5.0219 11 1 5.8549 2.6549 -4.9183 12 1 6.2503 1.0189 -3.1725 13 16 2.4109 2.1205 1.4288 14 8 1.5714 1.5468 2.4214 15 8 2.4555 3.5151 1.1599 16 7 3.9583 1.6674 1.8064 17 6 5.0742 2.0956 0.9594 18 1 4.7051 2.3224 -0.0408 19 6 5.7202 3.3457 1.5602 20 6 6.8852 3.7933 0.6752 21 6 7.9232 2.6722 0.5930 22 6 7.2774 1.4221 -0.0078 23 6 6.1121 0.9744 0.8778 24 1 6.4814 0.7476 1.8780 25 8 5.5089 -0.1932 0.3166 26 6 6.0766 -1.4203 0.7794 27 1 -0.3634 -1.0236 0.0907 28 1 -0.3633 0.5905 0.8412 29 1 -0.3633 0.4333 -0.9318 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.2835 1.9275 -1.8868 33 1 2.2473 3.1756 -1.0613 34 1 3.4271 3.7330 -4.4148 35 1 4.1263 1.1218 2.5906 36 1 4.9807 4.1445 1.6183 37 1 6.0894 3.1189 2.5604 38 1 6.5156 4.0202 -0.3249 39 1 7.3451 4.6841 1.1030 40 1 8.7535 2.9913 -0.0371 41 1 8.2929 2.4453 1.5930 42 1 6.9077 1.6490 -1.0078 43 1 8.0167 0.6234 -0.0659 44 1 5.9630 -1.4879 1.8613 45 1 5.5640 -2.2585 0.3074 46 1 7.1355 -1.4502 0.5225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337095121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:24 Heat of formation + Delta-G solvation = -142.293787 kcal Electronic energy + Delta-G solvation = -28491.451415 eV Core-core repulsion = 24735.234841 eV Total energy + Delta-G solvation = -3756.216574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.20101 -36.58766 -36.17608 -35.90302 -35.10157 -33.81017 -32.61118 -29.88763 -29.81434 -28.38540 -26.51579 -26.13074 -23.06038 -22.23074 -21.90967 -21.57195 -19.90101 -18.61586 -17.12636 -16.76790 -16.47697 -16.20796 -15.91551 -15.23802 -14.95727 -14.55417 -14.36970 -13.85827 -13.66089 -13.54504 -13.24698 -13.09967 -12.81129 -12.61279 -12.46662 -11.97030 -11.91353 -11.67420 -11.60916 -11.42425 -11.36530 -11.20141 -11.06701 -10.99745 -10.87253 -10.74080 -10.61255 -10.51764 -10.40053 -10.29759 -9.98643 -9.91870 -9.59475 -9.29210 -8.89109 -8.40722 -7.92790 -6.03016 -4.06691 1.42022 3.29290 3.36776 3.39425 3.61844 3.96353 4.27291 4.43452 4.89659 4.98473 5.16055 5.17542 5.27053 5.30172 5.38715 5.45139 5.50566 5.53537 5.54370 5.67609 5.70475 5.77186 5.80248 5.89005 5.93913 6.02834 6.14715 6.21545 6.23293 6.28505 6.41200 6.44389 6.51543 6.56255 6.74566 6.78186 6.85495 7.38603 7.47021 7.51920 7.59321 7.79500 7.97513 8.28302 9.03617 9.58123 11.04936 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.008378 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.090935 B = 3341.406549 C = 4462.464610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.137 3.863 3 N -0.987 5.987 4 C 0.241 3.759 5 C -0.533 4.533 6 H 0.077 0.923 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.267 1.267 13 S 2.784 3.216 14 O -1.005 7.005 15 O -0.980 6.980 16 N -1.120 6.120 17 C 0.150 3.850 18 H 0.129 0.871 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.145 4.145 23 C 0.094 3.906 24 H 0.054 0.946 25 O -0.360 6.360 26 C 0.031 3.969 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.082 0.918 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 -5.911 9.344 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 N -0.828 5.828 4 C 0.119 3.881 5 C -0.573 4.573 6 H 0.095 0.905 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.192 1.192 13 S 2.792 3.208 14 O -0.989 6.989 15 O -0.963 6.963 16 N -0.875 5.875 17 C 0.042 3.958 18 H 0.147 0.853 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.184 4.184 23 C 0.035 3.965 24 H 0.072 0.928 25 O -0.278 6.278 26 C -0.066 4.066 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.233 0.767 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.547 -5.052 9.398 12.518 hybrid contribution 1.447 -1.025 -0.423 1.822 sum 7.993 -6.076 8.975 13.467 Atomic orbital electron populations 1.22223 0.97274 1.01117 1.02305 1.20877 0.93114 0.82945 1.02038 1.57620 1.78507 1.22872 1.23845 1.19236 0.97205 0.92613 0.79038 1.21696 1.10372 1.17615 1.07570 0.90533 1.24946 0.96780 0.94568 0.97523 1.69957 1.41065 1.19493 1.22363 0.86714 0.83089 0.78553 0.80268 1.20824 1.21548 1.19213 1.01796 0.72580 0.73754 0.72684 1.93536 1.65445 1.79958 1.59933 1.93576 1.86602 1.30962 1.85200 1.55985 1.24820 1.68960 1.37751 1.21104 0.86389 0.91609 0.96657 0.85294 1.22020 0.98282 0.98069 0.98674 1.21553 0.95529 0.97576 1.01352 1.21500 0.98078 0.95185 1.00487 1.22103 0.97169 0.97543 1.01557 1.22327 0.92728 0.86220 0.95274 0.92758 1.88124 1.59179 1.12638 1.67853 1.22738 0.97869 0.87830 0.98190 0.92622 0.92631 0.92254 0.90104 0.92384 0.95252 0.92521 0.92801 0.76677 0.89968 0.92282 0.90680 0.91790 0.91815 0.92393 0.89792 0.92132 0.94711 0.89929 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 10.24 37.16 0.38 -2.42 16 2 C 0.14 2.47 6.00 -4.04 -0.02 2.44 16 3 N -0.99 -20.55 2.86 -115.67 -0.33 -20.88 16 4 C 0.24 5.94 5.44 -5.20 -0.03 5.91 16 5 C -0.53 -13.56 7.25 -34.44 -0.25 -13.81 16 6 H 0.08 1.92 7.43 -52.48 -0.39 1.53 16 7 C 0.06 1.71 5.45 -17.82 -0.10 1.62 16 8 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -5.93 6.91 56.52 0.39 -5.54 16 13 S 2.78 56.07 5.97 -107.50 -0.64 55.43 16 14 O -1.00 -20.97 17.16 -57.17 -0.98 -21.95 16 15 O -0.98 -22.82 15.93 -57.17 -0.91 -23.73 16 16 N -1.12 -18.57 5.38 -4.89 -0.03 -18.60 16 17 C 0.15 2.54 2.36 -67.93 -0.16 2.38 16 18 H 0.13 2.69 5.80 -51.93 -0.30 2.39 16 19 C -0.13 -1.98 5.53 -26.73 -0.15 -2.12 16 20 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 21 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 22 C -0.15 -2.09 5.54 -26.70 -0.15 -2.24 16 23 C 0.09 1.40 2.20 -26.70 -0.06 1.34 16 24 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 25 O -0.36 -5.84 9.88 -35.23 -0.35 -6.19 16 26 C 0.03 0.37 10.82 101.05 1.09 1.46 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.96 7.95 -51.92 -0.41 0.54 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.48 7.95 -51.93 -0.41 1.06 16 31 H 0.06 0.95 7.79 -51.93 -0.40 0.54 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.55 6.71 -51.93 -0.35 1.20 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.40 5.53 8.86 -34.47 -0.31 5.23 16 36 H 0.08 1.38 7.82 -51.92 -0.41 0.98 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.46 7.95 -51.93 -0.41 1.05 16 43 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 44 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.37 7.87 -51.93 -0.41 -0.03 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -31.03 375.27 -9.61 -40.64 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.99 Total: 7.45 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 0.24 Total: -8.85 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: 0.38 Total: -63.89 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -2.24 Total: -51.86 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 56.07 SS G_CDS: -0.64 Total: 55.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.03 -9.61 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337095121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.651 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds