Wall clock time and date at job start Tue Mar 31 2020 13:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.47248 * 2 1 4 4 C 1.46494 * 120.00169 * 274.94274 * 3 2 1 5 5 C 1.50698 * 109.47200 * 283.63367 * 4 3 2 6 6 H 1.08010 * 119.99909 * 4.86993 * 5 4 3 7 7 C 1.37877 * 120.00498 * 184.87060 * 5 4 3 8 8 N 1.31518 * 119.99800 * 4.81852 * 7 5 4 9 9 Si 1.86800 * 120.00397 * 184.82307 * 7 5 4 10 10 H 1.48504 * 109.47252 * 85.62422 * 9 7 5 11 11 H 1.48497 * 109.47232 * 205.62250 * 9 7 5 12 12 H 1.48498 * 109.47076 * 325.62638 * 9 7 5 13 13 S 1.65599 * 119.99662 * 94.94343 * 3 2 1 14 14 O 1.42098 * 106.40400 * 329.90210 * 13 3 2 15 15 O 1.42100 * 106.40028 * 196.98165 * 13 3 2 16 16 N 1.65601 * 107.21930 * 83.44206 * 13 3 2 17 17 C 1.46495 * 119.99929 * 66.04609 * 16 13 3 18 18 H 1.08999 * 109.47423 * 336.59256 * 17 16 13 19 19 C 1.53002 * 109.47326 * 96.59578 * 17 16 13 20 20 C 1.52998 * 109.47332 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47158 * 300.00078 * 20 19 17 22 22 C 1.52998 * 109.47571 * 59.99803 * 21 20 19 23 23 C 1.53005 * 109.47072 * 216.59357 * 17 16 13 24 24 H 1.08996 * 109.47299 * 299.99865 * 23 17 16 25 25 O 1.42901 * 109.47032 * 60.00379 * 23 17 16 26 26 C 1.42901 * 113.99635 * 210.00299 * 25 23 17 27 27 H 1.09001 * 109.47692 * 185.06553 * 1 2 3 28 28 H 1.09008 * 109.46535 * 305.06597 * 1 2 3 29 29 H 1.08996 * 109.47147 * 65.06037 * 1 2 3 30 30 H 1.09000 * 109.46866 * 240.00035 * 2 1 3 31 31 H 1.09000 * 109.46993 * 120.00456 * 2 1 3 32 32 H 1.08997 * 109.47036 * 43.63472 * 4 3 2 33 33 H 1.08998 * 109.47081 * 163.63510 * 4 3 2 34 34 H 0.96994 * 120.00049 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00081 * 245.77265 * 16 13 3 36 36 H 1.09008 * 109.46831 * 299.99962 * 19 17 16 37 37 H 1.08999 * 109.47133 * 59.99500 * 19 17 16 38 38 H 1.09009 * 109.47307 * 59.99749 * 20 19 17 39 39 H 1.09003 * 109.47225 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47218 * 180.02562 * 21 20 19 41 41 H 1.09006 * 109.47127 * 299.99671 * 21 20 19 42 42 H 1.09006 * 109.47003 * 59.99792 * 22 21 20 43 43 H 1.08991 * 109.47344 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.47485 * 59.99290 * 26 25 23 45 45 H 1.09002 * 109.47065 * 179.97438 * 26 25 23 46 46 H 1.09005 * 109.46441 * 299.99327 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1595 2.1082 -1.2639 5 6 3.3946 1.6303 -1.9832 6 1 3.9690 0.8083 -1.5821 7 6 3.7914 2.2424 -3.1532 8 7 3.1482 3.3026 -3.5915 9 14 5.2423 1.5659 -4.1158 10 1 4.7750 0.4861 -5.0219 11 1 5.8549 2.6549 -4.9183 12 1 6.2503 1.0189 -3.1725 13 16 2.4109 2.1205 1.4288 14 8 1.5714 1.5468 2.4214 15 8 2.4555 3.5151 1.1599 16 7 3.9583 1.6674 1.8064 17 6 5.0742 2.0956 0.9594 18 1 4.7051 2.3224 -0.0408 19 6 5.7202 3.3457 1.5602 20 6 6.8852 3.7933 0.6752 21 6 7.9232 2.6722 0.5930 22 6 7.2774 1.4221 -0.0078 23 6 6.1121 0.9744 0.8778 24 1 6.4814 0.7476 1.8780 25 8 5.5089 -0.1932 0.3166 26 6 6.0766 -1.4203 0.7794 27 1 -0.3634 -1.0236 0.0907 28 1 -0.3633 0.5905 0.8412 29 1 -0.3633 0.4333 -0.9318 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.2835 1.9275 -1.8868 33 1 2.2473 3.1756 -1.0613 34 1 3.4271 3.7330 -4.4148 35 1 4.1263 1.1218 2.5906 36 1 4.9807 4.1445 1.6183 37 1 6.0894 3.1189 2.5604 38 1 6.5156 4.0202 -0.3249 39 1 7.3451 4.6841 1.1030 40 1 8.7535 2.9913 -0.0371 41 1 8.2929 2.4453 1.5930 42 1 6.9077 1.6490 -1.0078 43 1 8.0167 0.6234 -0.0659 44 1 5.9630 -1.4879 1.8613 45 1 5.5640 -2.2585 0.3074 46 1 7.1355 -1.4502 0.5225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337095121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:22 Heat of formation + Delta-G solvation = -164.880029 kcal Electronic energy + Delta-G solvation = -28492.430828 eV Core-core repulsion = 24735.234841 eV Total energy + Delta-G solvation = -3757.195987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.36292 -38.26230 -37.61587 -37.32500 -36.83647 -35.09969 -34.59775 -31.46573 -30.99766 -29.57552 -28.41934 -27.10882 -24.88439 -23.40665 -23.22203 -23.05004 -21.11667 -20.16875 -18.68022 -18.41559 -18.27868 -17.66656 -17.23890 -16.85895 -16.23266 -15.99026 -15.68860 -15.41979 -14.87825 -14.79398 -14.59242 -14.56313 -14.29365 -13.88586 -13.74228 -13.58157 -13.56750 -13.34143 -13.11971 -13.00106 -12.95969 -12.70917 -12.68054 -12.48550 -12.27673 -12.11898 -12.07257 -11.94188 -11.67765 -11.64601 -11.52346 -11.49128 -11.12577 -10.53091 -10.48007 -10.13335 -9.69437 -8.08886 -6.18177 -0.21295 1.43965 1.45107 1.56039 2.04440 2.48171 2.66792 2.91871 3.22395 3.51230 3.76473 3.90070 4.03468 4.10462 4.23907 4.27529 4.33776 4.40963 4.48434 4.53426 4.55500 4.60346 4.65788 4.69268 4.77255 4.89219 4.95283 5.01361 5.03042 5.15999 5.18671 5.20808 5.26421 5.31684 5.34697 5.41568 5.45674 5.57564 5.61875 5.86928 5.97993 6.23156 6.30006 6.49273 6.97358 7.50098 8.99493 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.008378 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.090935 B = 3341.406549 C = 4462.464610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.129 3.871 3 N -0.992 5.992 4 C 0.258 3.742 5 C -0.521 4.521 6 H 0.081 0.919 7 C 0.014 3.986 8 N -0.931 5.931 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.253 1.253 13 S 2.796 3.204 14 O -1.010 7.010 15 O -1.016 7.016 16 N -1.103 6.103 17 C 0.145 3.855 18 H 0.084 0.916 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.145 4.145 23 C 0.097 3.903 24 H 0.088 0.912 25 O -0.394 6.394 26 C 0.024 3.976 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.011 0.989 33 H 0.022 0.978 34 H 0.261 0.739 35 H 0.419 0.581 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 -8.074 11.087 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.135 3.865 5 C -0.561 4.561 6 H 0.099 0.901 7 C -0.185 4.185 8 N -0.571 5.571 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.177 1.177 13 S 2.805 3.195 14 O -0.994 6.994 15 O -1.000 7.000 16 N -0.863 5.863 17 C 0.038 3.962 18 H 0.103 0.897 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.145 4.145 22 C -0.184 4.184 23 C 0.038 3.962 24 H 0.106 0.894 25 O -0.313 6.313 26 C -0.072 4.072 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.870 -7.255 11.171 16.003 hybrid contribution 0.687 -0.386 -0.893 1.191 sum 9.557 -7.641 10.277 15.980 Atomic orbital electron populations 1.22200 0.96114 1.03027 1.01252 1.21119 0.94177 0.81373 1.02945 1.57528 1.79275 1.23926 1.22515 1.18752 0.96322 0.91157 0.80306 1.21839 1.10074 1.17012 1.07146 0.90051 1.25699 0.99341 0.94773 0.98662 1.70092 1.43025 1.21073 1.22944 0.85757 0.80410 0.77736 0.78964 1.20519 1.21816 1.17664 1.01229 0.73182 0.72909 0.72222 1.93519 1.66300 1.79804 1.59772 1.93533 1.87326 1.33517 1.85638 1.55545 1.23407 1.69058 1.38292 1.21112 0.86788 0.93752 0.94583 0.89750 1.22006 0.98049 0.96315 1.00570 1.21567 0.95712 0.99446 0.99363 1.21486 0.97442 0.93288 1.02289 1.22105 0.97512 0.99233 0.99517 1.22331 0.91699 0.85163 0.97002 0.89385 1.88078 1.60302 1.14080 1.68814 1.22938 0.98516 0.86259 0.99485 0.89191 0.93602 0.93406 0.90432 0.90124 0.97117 0.96002 0.92973 0.74596 0.92718 0.88960 0.94043 0.89568 0.90607 0.89362 0.93719 0.90061 0.92708 0.89567 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 10.24 71.98 0.74 -4.63 16 2 C 0.13 4.57 6.00 86.38 0.52 5.09 16 3 N -0.99 -42.11 2.86 -519.87 -1.49 -43.59 16 4 C 0.26 13.34 5.44 85.63 0.47 13.80 16 5 C -0.52 -27.30 7.25 25.60 0.19 -27.11 16 6 H 0.08 4.13 7.43 -2.91 -0.02 4.11 16 7 C 0.01 0.77 5.45 84.65 0.46 1.23 16 8 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 9 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.25 -10.73 6.91 99.48 0.69 -10.04 16 13 S 2.80 113.70 5.97 -56.49 -0.34 113.36 16 14 O -1.01 -41.39 17.16 -128.00 -2.20 -43.59 16 15 O -1.02 -49.36 15.93 -128.00 -2.04 -51.40 16 16 N -1.10 -35.39 5.38 -169.39 -0.91 -36.30 16 17 C 0.15 4.82 2.36 44.99 0.11 4.93 16 18 H 0.08 3.63 5.80 -2.39 -0.01 3.62 16 19 C -0.13 -3.78 5.53 30.59 0.17 -3.61 16 20 C -0.12 -3.24 5.92 30.59 0.18 -3.06 16 21 C -0.11 -2.30 5.92 30.59 0.18 -2.12 16 22 C -0.15 -3.82 5.54 30.61 0.17 -3.66 16 23 C 0.10 2.64 2.20 30.62 0.07 2.70 16 24 H 0.09 1.79 7.79 -2.39 -0.02 1.77 16 25 O -0.39 -11.87 9.88 -148.98 -1.47 -13.35 16 26 C 0.02 0.50 10.82 113.37 1.23 1.73 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.04 1.55 7.95 -2.38 -0.02 1.53 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 2.79 7.95 -2.39 -0.02 2.77 16 31 H 0.08 2.48 7.79 -2.39 -0.02 2.46 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.02 1.28 6.71 -2.39 -0.02 1.27 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.42 10.47 8.86 -96.74 -0.86 9.62 16 36 H 0.05 1.88 7.82 -2.38 -0.02 1.86 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.04 1.52 7.95 -2.38 -0.02 1.50 16 43 H 0.08 1.79 7.87 -2.39 -0.02 1.77 16 44 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 45 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 0.85 7.87 -2.38 -0.02 0.83 16 Total: -1.00 -69.99 375.27 -1.58 -71.58 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.08 Total: 27.71 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.47 Total: -14.71 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -2.11 Total: -134.38 kcal Atomic # 8 Polarization: -102.62 SS G_CDS: -5.71 Total: -108.33 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 113.70 SS G_CDS: -0.34 Total: 113.36 kcal Total: -69.99 -1.58 -71.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337095121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.303 kcal (2) G-P(sol) polarization free energy of solvation -69.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds