Wall clock time and date at job start Tue Mar 31 2020 13:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99999 * 85.00441 * 3 2 1 5 5 C 1.50700 * 109.47099 * 84.99452 * 4 3 2 6 6 H 1.07992 * 120.00396 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99695 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99754 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00194 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46668 * 90.00094 * 9 7 5 11 11 H 1.48496 * 109.47387 * 210.00050 * 9 7 5 12 12 H 1.48500 * 109.47094 * 330.00171 * 9 7 5 13 13 S 1.65593 * 120.00395 * 265.00156 * 3 2 1 14 14 O 1.42100 * 106.40784 * 203.54110 * 13 3 2 15 15 O 1.42105 * 106.40278 * 336.46109 * 13 3 2 16 16 N 1.65598 * 107.21993 * 90.00069 * 13 3 2 17 17 C 1.46502 * 120.00204 * 65.00171 * 16 13 3 18 18 H 1.09003 * 109.46768 * 24.99914 * 17 16 13 19 19 C 1.53004 * 109.47043 * 265.00312 * 17 16 13 20 20 C 1.52994 * 109.47161 * 145.00282 * 17 16 13 21 21 C 1.53000 * 109.47262 * 294.99772 * 20 17 16 22 22 H 1.08999 * 110.33349 * 307.25874 * 21 20 17 23 23 C 1.54481 * 110.37553 * 185.00452 * 21 20 17 24 24 C 1.54514 * 104.06210 * 217.19456 * 23 21 20 25 25 C 1.54481 * 104.06393 * 359.97438 * 24 23 21 26 26 O 1.44423 * 110.37228 * 69.62191 * 21 20 17 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08995 * 109.47474 * 205.00200 * 4 3 2 33 33 H 1.09003 * 109.46943 * 324.99971 * 4 3 2 34 34 H 0.96994 * 119.99602 * 179.97438 * 8 7 5 35 35 H 0.97004 * 119.99875 * 245.00508 * 16 13 3 36 36 H 1.09002 * 109.47046 * 179.97438 * 19 17 16 37 37 H 1.08990 * 109.47049 * 299.99733 * 19 17 16 38 38 H 1.09003 * 109.46890 * 60.00008 * 19 17 16 39 39 H 1.08993 * 109.47432 * 55.00428 * 20 17 16 40 40 H 1.09002 * 109.47159 * 175.00631 * 20 17 16 41 41 H 1.08997 * 110.50660 * 335.83528 * 23 21 20 42 42 H 1.08989 * 110.51100 * 98.54605 * 23 21 20 43 43 H 1.08997 * 110.50956 * 118.64349 * 24 23 21 44 44 H 1.09002 * 110.50823 * 241.21547 * 24 23 21 45 45 H 1.08994 * 110.37280 * 142.80934 * 25 24 23 46 46 H 1.08996 * 110.37579 * 265.04350 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7887 1.8823 6 1 4.1723 1.1117 1.3836 7 6 3.8525 2.3605 3.0849 8 7 5.0191 2.0817 3.6244 9 14 2.6802 3.5311 3.9480 10 1 1.7958 2.7625 4.8603 11 1 3.4591 4.5226 4.7326 12 1 1.8539 4.2388 2.9372 13 16 2.4120 2.1203 -1.4286 14 8 3.3282 3.1572 -1.1049 15 8 2.7094 1.0801 -2.3499 16 7 1.0430 2.8643 -1.9893 17 6 0.4512 3.9731 -1.2366 18 1 1.2206 4.4535 -0.6322 19 6 -0.6538 3.4375 -0.3238 20 6 -0.1420 4.9922 -2.2114 21 6 0.9813 5.6193 -3.0397 22 1 1.7602 6.0117 -2.3859 23 6 0.4218 6.7407 -3.9429 24 6 1.2333 6.6090 -5.2512 25 6 2.1875 5.4240 -4.9834 26 8 1.5328 4.6484 -3.9556 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0921 3.1802 1.0757 33 1 1.3618 1.8096 1.9454 34 1 5.2709 2.4842 4.4702 35 1 0.6329 2.5659 -2.8162 36 1 -1.0939 4.2624 0.2366 37 1 -1.4232 2.9571 -0.9281 38 1 -0.2312 2.7114 0.3708 39 1 -0.8472 4.4922 -2.8752 40 1 -0.6594 5.7716 -1.6521 41 1 -0.6396 6.5830 -4.1343 42 1 0.5878 7.7167 -3.4871 43 1 0.5730 6.3863 -6.0893 44 1 1.7986 7.5209 -5.4434 45 1 2.3137 4.8269 -5.8864 46 1 3.1531 5.7865 -4.6310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337099105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:49 Heat of formation + Delta-G solvation = -132.208103 kcal Electronic energy + Delta-G solvation = -27612.783078 eV Core-core repulsion = 23857.003852 eV Total energy + Delta-G solvation = -3755.779226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.57566 -36.81308 -36.41048 -35.94512 -35.02054 -32.55181 -32.26556 -31.13691 -30.21623 -29.33262 -27.07239 -25.93321 -22.88403 -22.36925 -21.48000 -21.13487 -21.00687 -18.81802 -17.34954 -16.91228 -16.63108 -16.41752 -15.95053 -15.62538 -15.41846 -14.97096 -14.22755 -13.92850 -13.85279 -13.60900 -13.36097 -13.26319 -12.82823 -12.51119 -12.39184 -12.24308 -12.16431 -12.00297 -11.89188 -11.80422 -11.42202 -11.33237 -11.26649 -11.18434 -11.04268 -11.00291 -10.90754 -10.76827 -10.62956 -10.40433 -10.24627 -10.13928 -9.74484 -9.51802 -9.11358 -8.56460 -8.05765 -6.04969 -4.03417 1.34455 3.26407 3.33361 3.34549 3.61306 3.86391 4.26160 4.40186 4.42257 4.49239 4.77768 4.86118 5.00012 5.09814 5.15805 5.23025 5.25869 5.31516 5.43164 5.49805 5.52237 5.56662 5.63589 5.66297 5.71165 5.72796 5.75342 5.80994 5.85924 5.94527 5.99990 6.04905 6.23427 6.36805 6.40329 6.55668 6.59294 6.76254 6.86417 7.16247 7.34073 7.59155 7.64445 8.53483 9.01234 9.54338 11.08880 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.004931 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.956990 B = 5676.590631 C = 6133.575751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.989 5.989 4 C 0.229 3.771 5 C -0.528 4.528 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.264 1.264 13 S 2.786 3.214 14 O -0.966 6.966 15 O -0.998 6.998 16 N -1.116 6.116 17 C 0.150 3.850 18 H 0.090 0.910 19 C -0.177 4.177 20 C -0.114 4.114 21 C 0.073 3.927 22 H 0.074 0.926 23 C -0.151 4.151 24 C -0.154 4.154 25 C 0.040 3.960 26 O -0.360 6.360 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 7.096 -13.689 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.829 5.829 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.188 1.188 13 S 2.793 3.207 14 O -0.949 6.949 15 O -0.982 6.982 16 N -0.874 5.874 17 C 0.043 3.957 18 H 0.108 0.892 19 C -0.236 4.236 20 C -0.153 4.153 21 C 0.015 3.985 22 H 0.092 0.908 23 C -0.189 4.189 24 C -0.192 4.192 25 C -0.037 4.037 26 O -0.279 6.279 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.861 6.978 -13.748 20.732 hybrid contribution -0.996 0.792 0.422 1.341 sum -14.857 7.771 -13.326 21.417 Atomic orbital electron populations 1.22292 0.97318 1.01469 1.01872 1.21145 0.92880 0.83069 1.03820 1.57553 1.81328 1.21525 1.22507 1.19387 0.97781 0.91100 0.81180 1.21404 1.00962 1.28658 1.05725 0.90468 1.24876 0.95090 0.96072 0.96979 1.69902 1.20631 1.44094 1.18836 0.86925 0.81446 0.81603 0.80181 1.20109 1.20969 1.18845 1.01800 0.73357 0.73119 0.72389 1.93605 1.59714 1.57632 1.83923 1.93520 1.83540 1.57695 1.63483 1.56060 1.49415 1.46522 1.35420 1.20688 0.96043 0.86873 0.92141 0.89195 1.22452 0.98930 1.02158 1.00021 1.21962 0.97022 0.98686 0.97659 1.23061 0.95449 0.88248 0.91712 0.90807 1.23004 1.00649 0.99543 0.95693 1.22924 0.98756 0.99315 0.98230 1.23408 0.95687 0.92506 0.92112 1.89189 1.72672 1.29211 1.36841 0.92238 0.92237 0.93043 0.89640 0.90401 0.95086 0.95512 0.92609 0.75577 0.91900 0.92232 0.90884 0.90472 0.89507 0.90723 0.90662 0.90955 0.90811 0.89283 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.68 37.16 0.36 -1.93 16 2 C 0.12 2.03 6.40 -4.04 -0.03 2.00 16 3 N -0.99 -20.03 2.49 -115.66 -0.29 -20.32 16 4 C 0.23 5.29 3.03 -5.19 -0.02 5.28 16 5 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.09 5.47 -17.81 -0.10 1.99 16 8 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 9 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 13 S 2.79 56.64 6.08 -107.50 -0.65 55.99 16 14 O -0.97 -23.54 16.45 -57.17 -0.94 -24.48 16 15 O -1.00 -21.92 16.69 -57.17 -0.95 -22.87 16 16 N -1.12 -16.73 4.26 -4.89 -0.02 -16.76 16 17 C 0.15 2.00 2.93 -67.93 -0.20 1.80 16 18 H 0.09 1.40 7.13 -51.93 -0.37 1.03 16 19 C -0.18 -2.07 9.52 37.16 0.35 -1.72 16 20 C -0.11 -1.17 4.51 -26.73 -0.12 -1.29 16 21 C 0.07 0.84 3.23 -25.95 -0.08 0.76 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 23 C -0.15 -1.30 6.63 -25.16 -0.17 -1.47 16 24 C -0.15 -1.29 7.09 -25.16 -0.18 -1.47 16 25 C 0.04 0.43 7.63 37.93 0.29 0.72 16 26 O -0.36 -4.88 9.74 -35.23 -0.34 -5.22 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.80 7.74 -51.93 -0.40 0.40 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 31 H 0.08 1.33 6.91 -51.93 -0.36 0.97 16 32 H 0.03 0.72 6.30 -51.93 -0.33 0.40 16 33 H 0.03 0.58 7.53 -51.93 -0.39 0.19 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.41 5.42 8.49 -34.47 -0.29 5.13 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.00 5.61 -51.93 -0.29 0.71 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -35.33 373.71 -9.62 -44.95 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.93 Total: 4.47 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.23 Total: -10.73 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: 0.46 Total: -63.96 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -2.24 Total: -52.58 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: 56.64 SS G_CDS: -0.65 Total: 55.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.33 -9.62 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337099105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.263 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds