Wall clock time and date at job start Tue Mar 31 2020 13:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47143 * 2 1 4 4 C 1.46500 * 120.00011 * 295.19552 * 3 2 1 5 5 C 1.50700 * 109.47087 * 274.99687 * 4 3 2 6 6 H 1.08004 * 119.99760 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00225 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99655 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00204 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46797 * 60.00267 * 9 7 5 11 11 H 1.48495 * 109.47126 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46774 * 300.00257 * 9 7 5 13 13 S 1.65601 * 120.00021 * 115.18916 * 3 2 1 14 14 O 1.42104 * 106.40235 * 148.05597 * 13 3 2 15 15 O 1.42103 * 106.39902 * 15.13877 * 13 3 2 16 16 N 1.65595 * 107.21984 * 261.60025 * 13 3 2 17 17 C 1.46498 * 120.00128 * 62.68707 * 16 13 3 18 18 H 1.08993 * 109.47041 * 332.07163 * 17 16 13 19 19 C 1.52999 * 109.47334 * 92.07322 * 17 16 13 20 20 C 1.53004 * 109.47262 * 212.06976 * 17 16 13 21 21 C 1.53001 * 109.46634 * 64.99639 * 20 17 16 22 22 H 1.09002 * 110.33543 * 305.70223 * 21 20 17 23 23 C 1.54482 * 110.37083 * 183.44937 * 21 20 17 24 24 C 1.54506 * 104.06422 * 217.18954 * 23 21 20 25 25 C 1.54481 * 104.06313 * 0.02562 * 24 23 21 26 26 O 1.44422 * 110.37149 * 67.95526 * 21 20 17 27 27 H 1.08998 * 109.47658 * 300.76009 * 1 2 3 28 28 H 1.09006 * 109.47041 * 60.76254 * 1 2 3 29 29 H 1.09000 * 109.47026 * 180.75860 * 1 2 3 30 30 H 1.08992 * 109.47349 * 239.99890 * 2 1 3 31 31 H 1.09004 * 109.46801 * 119.99734 * 2 1 3 32 32 H 1.08997 * 109.47146 * 34.99952 * 4 3 2 33 33 H 1.09000 * 109.46930 * 154.99726 * 4 3 2 34 34 H 0.97004 * 119.99864 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00006 * 242.95895 * 16 13 3 36 36 H 1.09006 * 109.47504 * 59.99383 * 19 17 16 37 37 H 1.09002 * 109.47305 * 180.02562 * 19 17 16 38 38 H 1.09007 * 109.47234 * 299.99897 * 19 17 16 39 39 H 1.08991 * 109.47590 * 184.99854 * 20 17 16 40 40 H 1.09004 * 109.46948 * 305.00286 * 20 17 16 41 41 H 1.08993 * 110.51203 * 335.84174 * 23 21 20 42 42 H 1.09007 * 110.50932 * 98.54998 * 23 21 20 43 43 H 1.09007 * 110.50693 * 118.64227 * 24 23 21 44 44 H 1.08993 * 110.51473 * 241.21676 * 24 23 21 45 45 H 1.08993 * 110.37476 * 142.80966 * 25 24 23 46 46 H 1.09003 * 110.36453 * 265.14209 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7533 2.2519 -1.1480 5 6 2.8094 2.0312 -2.2002 6 1 3.5992 1.3144 -2.0305 7 6 2.7673 2.7443 -3.3795 8 7 1.8057 3.6175 -3.5858 9 14 4.0759 2.4703 -4.6840 10 1 4.0490 1.0515 -5.1216 11 1 3.8073 3.3529 -5.8476 12 1 5.4119 2.7891 -4.1194 13 16 2.8698 1.9584 1.2978 14 8 3.7934 2.9073 0.7819 15 8 3.2640 0.8231 2.0560 16 7 1.8073 2.8063 2.2434 17 6 0.6694 2.1214 2.8617 18 1 0.3843 1.2656 2.2499 19 6 1.0621 1.6404 4.2601 20 6 -0.5115 3.0884 2.9681 21 6 -0.9842 3.4724 1.5645 22 1 -0.1523 3.8627 0.9782 23 6 -2.1207 4.5155 1.6463 24 6 -3.0756 4.1213 0.4975 25 6 -2.4035 2.8862 -0.1422 26 8 -1.5739 2.3319 0.9031 27 1 -0.3634 0.5256 0.8830 28 1 -0.3633 0.5020 -0.8968 29 1 -0.3633 -1.0276 0.0136 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.7728 2.0180 -1.5627 33 1 1.7728 3.2932 -0.8264 34 1 1.7759 4.1190 -4.4156 35 1 1.9360 3.7573 2.3847 36 1 1.3474 2.4963 4.8720 37 1 0.2157 1.1304 4.7200 38 1 1.9035 0.9515 4.1844 39 1 -1.3275 2.6075 3.5074 40 1 -0.2000 3.9848 3.5044 41 1 -2.6312 4.4495 2.6071 42 1 -1.7287 5.5204 1.4892 43 1 -4.0583 3.8602 0.8904 44 1 -3.1578 4.9321 -0.2262 45 1 -3.1570 2.1628 -0.4535 46 1 -1.7899 3.1857 -0.9919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337099107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:56 Heat of formation + Delta-G solvation = -135.554362 kcal Electronic energy + Delta-G solvation = -28101.871598 eV Core-core repulsion = 24345.947267 eV Total energy + Delta-G solvation = -3755.924331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.40948 -36.83552 -36.25885 -35.92380 -35.07191 -32.58145 -32.02975 -31.05626 -29.75003 -29.30227 -26.62240 -25.77944 -23.15796 -22.33863 -21.40720 -20.94595 -20.82260 -18.79124 -17.38396 -16.66195 -16.36996 -16.11956 -16.02645 -15.60533 -15.23727 -14.93049 -14.29514 -13.76359 -13.66102 -13.56574 -13.34268 -13.12765 -12.73253 -12.46288 -12.17258 -12.07668 -11.96609 -11.95896 -11.67848 -11.48557 -11.34760 -11.23270 -11.19863 -11.09107 -10.96072 -10.85668 -10.75610 -10.57014 -10.49474 -10.37727 -10.17657 -9.90185 -9.67324 -9.51914 -9.18233 -8.39037 -7.95304 -6.02197 -4.04332 1.35946 3.36515 3.39337 3.44789 3.59909 4.03377 4.21940 4.48970 4.54810 4.68236 4.95066 5.02592 5.09040 5.13751 5.18008 5.33291 5.39834 5.47864 5.57707 5.58557 5.65488 5.73812 5.75464 5.79570 5.90232 5.92491 5.96104 5.98326 6.03152 6.11911 6.19634 6.29379 6.35391 6.39787 6.52695 6.80253 6.96024 7.02801 7.26500 7.34597 7.54677 7.73542 7.97084 8.28201 8.97735 9.60064 11.06219 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.006184 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.264199 B = 4526.473132 C = 5845.393191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.987 5.987 4 C 0.266 3.734 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.778 3.222 14 O -0.969 6.969 15 O -1.000 7.000 16 N -1.129 6.129 17 C 0.149 3.851 18 H 0.094 0.906 19 C -0.172 4.172 20 C -0.115 4.115 21 C 0.071 3.929 22 H 0.077 0.923 23 C -0.150 4.150 24 C -0.154 4.154 25 C 0.045 3.955 26 O -0.361 6.361 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.409 0.591 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 -0.373 12.786 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.830 5.830 4 C 0.144 3.856 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 S 2.786 3.214 14 O -0.953 6.953 15 O -0.984 6.984 16 N -0.887 5.887 17 C 0.042 3.958 18 H 0.112 0.888 19 C -0.231 4.231 20 C -0.154 4.154 21 C 0.014 3.986 22 H 0.095 0.905 23 C -0.188 4.188 24 C -0.192 4.192 25 C -0.032 4.032 26 O -0.280 6.280 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.962 -0.801 12.846 16.276 hybrid contribution 0.214 0.768 -1.003 1.282 sum -9.748 -0.033 11.843 15.339 Atomic orbital electron populations 1.22264 0.96034 1.00639 1.03626 1.21146 0.94399 0.82853 1.02478 1.57602 1.73272 1.19636 1.32461 1.18892 0.97252 0.87587 0.81904 1.21500 1.11154 1.22726 1.00922 0.92320 1.24893 0.95889 0.94960 0.98237 1.69903 1.32445 1.25431 1.26020 0.86614 0.82389 0.78016 0.80765 1.20245 1.21291 1.20072 1.01992 0.73558 0.73155 0.72653 1.93639 1.59737 1.63049 1.78879 1.93509 1.81335 1.52106 1.71437 1.56323 1.43463 1.21886 1.67020 1.20769 0.85204 0.95314 0.94494 0.88801 1.22355 1.02472 1.01822 0.96460 1.21941 0.97779 1.00002 0.95642 1.23033 0.95523 0.86268 0.93823 0.90475 1.22970 0.96829 0.99818 0.99149 1.22910 0.99269 0.98954 0.98051 1.23390 0.93664 0.94650 0.91504 1.89124 1.63203 1.28194 1.47463 0.91243 0.91826 0.93239 0.91155 0.90617 0.94417 0.95354 0.92839 0.75852 0.92480 0.91955 0.90963 0.90124 0.90264 0.91047 0.90770 0.91276 0.90749 0.89582 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.49 37.16 0.35 -2.26 16 2 C 0.12 2.12 6.38 -4.04 -0.03 2.10 16 3 N -0.99 -20.47 2.93 -115.66 -0.34 -20.81 16 4 C 0.27 6.52 4.99 -5.19 -0.03 6.50 16 5 C -0.52 -14.71 9.38 -34.44 -0.32 -15.03 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 S 2.78 55.66 5.95 -107.50 -0.64 55.02 16 14 O -0.97 -23.54 17.43 -57.17 -1.00 -24.54 16 15 O -1.00 -20.81 15.49 -57.17 -0.89 -21.69 16 16 N -1.13 -16.91 4.94 -4.89 -0.02 -16.94 16 17 C 0.15 1.92 2.78 -67.93 -0.19 1.73 16 18 H 0.09 1.32 4.96 -51.93 -0.26 1.06 16 19 C -0.17 -1.98 9.52 37.16 0.35 -1.62 16 20 C -0.11 -1.21 4.43 -26.73 -0.12 -1.33 16 21 C 0.07 0.89 3.19 -25.95 -0.08 0.80 16 22 H 0.08 1.13 7.66 -51.93 -0.40 0.74 16 23 C -0.15 -1.54 6.63 -25.16 -0.17 -1.71 16 24 C -0.15 -1.60 7.09 -25.16 -0.18 -1.78 16 25 C 0.04 0.56 7.63 37.93 0.29 0.85 16 26 O -0.36 -4.95 8.55 -35.23 -0.30 -5.25 16 27 H 0.07 1.04 3.55 -51.93 -0.18 0.85 16 28 H 0.06 1.10 6.89 -51.93 -0.36 0.74 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.28 6.67 -51.93 -0.35 0.94 16 32 H 0.04 0.94 6.71 -51.93 -0.35 0.60 16 33 H 0.03 0.74 7.84 -51.93 -0.41 0.33 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.41 5.35 8.80 -34.47 -0.30 5.05 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.98 7.33 -51.93 -0.38 0.60 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.63 7.87 -51.93 -0.41 0.23 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -33.09 370.36 -9.69 -42.78 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.59 Total: 4.07 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.21 Total: -10.10 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.37 Total: -62.86 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -2.18 Total: -51.48 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 55.66 SS G_CDS: -0.64 Total: 55.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.09 -9.69 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337099107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.772 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds