Wall clock time and date at job start Tue Mar 31 2020 13:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47417 * 2 1 4 4 C 1.46503 * 120.00386 * 275.67857 * 3 2 1 5 5 C 1.50695 * 109.46802 * 274.99526 * 4 3 2 6 6 H 1.08001 * 120.00179 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00232 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99520 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00391 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47175 * 90.00233 * 9 7 5 11 11 H 1.48500 * 109.47095 * 210.00177 * 9 7 5 12 12 H 1.48499 * 109.47106 * 329.99905 * 9 7 5 13 13 S 1.65607 * 119.99781 * 95.66818 * 3 2 1 14 14 O 1.42100 * 106.40050 * 161.09117 * 13 3 2 15 15 O 1.42097 * 106.39980 * 28.17516 * 13 3 2 16 16 N 1.65598 * 107.22109 * 274.63253 * 13 3 2 17 17 C 1.46500 * 119.99963 * 294.12758 * 16 13 3 18 18 C 1.52999 * 112.85045 * 302.76241 * 17 16 13 19 19 C 1.52997 * 109.46786 * 304.11477 * 18 17 16 20 20 O 1.42906 * 109.46966 * 184.45491 * 19 18 17 21 21 C 1.42900 * 114.00240 * 180.02562 * 20 19 18 22 22 C 1.53780 * 113.61012 * 171.56392 * 17 16 13 23 23 C 1.54053 * 86.98951 * 270.83965 * 22 17 16 24 24 C 1.53778 * 113.61234 * 73.96171 * 17 16 13 25 25 H 1.08996 * 109.47064 * 64.46952 * 1 2 3 26 26 H 1.09005 * 109.46628 * 184.46858 * 1 2 3 27 27 H 1.08997 * 109.47029 * 304.46602 * 1 2 3 28 28 H 1.08998 * 109.47256 * 240.00335 * 2 1 3 29 29 H 1.09002 * 109.47342 * 120.00256 * 2 1 3 30 30 H 1.09003 * 109.46643 * 34.99171 * 4 3 2 31 31 H 1.08998 * 109.47204 * 154.99339 * 4 3 2 32 32 H 0.97005 * 119.99928 * 179.97438 * 8 7 5 33 33 H 0.96994 * 119.99641 * 113.85215 * 16 13 3 34 34 H 1.08995 * 109.46932 * 64.11319 * 18 17 16 35 35 H 1.09004 * 109.46741 * 184.11914 * 18 17 16 36 36 H 1.08995 * 109.47490 * 304.45467 * 19 18 17 37 37 H 1.09001 * 109.47589 * 64.45883 * 19 18 17 38 38 H 1.09001 * 109.47280 * 300.00187 * 21 20 19 39 39 H 1.09009 * 109.47056 * 59.99914 * 21 20 19 40 40 H 1.09000 * 109.47312 * 179.97438 * 21 20 19 41 41 H 1.09000 * 113.61688 * 25.43402 * 22 17 16 42 42 H 1.09004 * 113.61076 * 156.33395 * 22 17 16 43 43 H 1.09003 * 113.61944 * 220.02721 * 23 22 17 44 44 H 1.08997 * 113.61432 * 89.11593 * 23 22 17 45 45 H 1.09000 * 113.61419 * 203.66302 * 24 17 16 46 46 H 1.08997 * 113.61739 * 334.56031 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1443 2.1137 -1.2625 5 6 3.4738 1.7963 -1.8969 6 1 4.1566 1.1166 -1.4088 7 6 3.8183 2.3728 -3.1010 8 7 2.9867 3.2002 -3.6957 9 14 5.4660 1.9789 -3.8878 10 1 5.3202 0.7991 -4.7779 11 1 5.9262 3.1453 -4.6834 12 1 6.4617 1.6791 -2.8276 13 16 2.4280 2.1146 1.4272 14 8 3.2540 3.2199 1.0877 15 8 2.8401 1.0778 2.3072 16 7 1.0392 2.7483 2.0690 17 6 0.3475 3.8420 1.3823 18 6 1.2397 5.0660 1.1657 19 6 1.8012 5.5320 2.5104 20 8 2.5497 6.7349 2.3229 21 6 3.1211 7.2572 3.5241 22 6 -1.0250 4.1795 1.9882 23 6 -1.6165 3.1309 1.0271 24 6 -0.4053 3.3969 0.1175 25 1 -0.3633 0.4429 -0.9273 26 1 -0.3633 -1.0246 0.0801 27 1 -0.3633 0.5816 0.8473 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.3402 1.8173 -1.9361 31 1 2.0803 3.1845 -1.0692 32 1 3.2291 3.6061 -4.5427 33 1 0.6815 2.3926 2.8975 34 1 2.0617 4.8031 0.5001 35 1 0.6529 5.8688 0.7192 36 1 0.9799 5.7193 3.2020 37 1 2.4520 4.7594 2.9199 38 1 2.3274 7.4801 4.2371 39 1 3.7994 6.5201 3.9542 40 1 3.6730 8.1693 3.2972 41 1 -1.1160 3.9099 3.0404 42 1 -1.3554 5.1974 1.7810 43 1 -2.5675 3.4298 0.5863 44 1 -1.6387 2.1228 1.4408 45 1 -0.5667 4.2010 -0.6004 46 1 0.0036 2.4958 -0.3397 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337131298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:41 Heat of formation + Delta-G solvation = -101.814893 kcal Electronic energy + Delta-G solvation = -28103.598198 eV Core-core repulsion = 24349.136920 eV Total energy + Delta-G solvation = -3754.461278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.72028 -37.45804 -36.60626 -36.05780 -35.14513 -32.65248 -32.61439 -30.86686 -29.97608 -26.61395 -26.57068 -25.77100 -24.25384 -23.07397 -21.73040 -21.44352 -19.70910 -18.39490 -17.39133 -16.84472 -16.23277 -16.21003 -15.80954 -15.63864 -15.45591 -14.77379 -14.64109 -14.30452 -13.83524 -13.52202 -13.43369 -13.12280 -12.89140 -12.57400 -12.34520 -12.08113 -11.92899 -11.73422 -11.62686 -11.50402 -11.47010 -11.31727 -11.05095 -10.98439 -10.88616 -10.81729 -10.74812 -10.55572 -10.41371 -10.33736 -9.94570 -9.91444 -9.59754 -9.39283 -9.10653 -8.40666 -8.05708 -6.03477 -4.06793 1.25480 3.33343 3.40264 3.45230 3.49613 3.90979 4.13775 4.47195 4.58129 4.68460 4.92316 4.95130 5.09480 5.28573 5.30300 5.35598 5.38997 5.44437 5.49116 5.59853 5.66645 5.69825 5.71876 5.72630 5.79834 5.84388 5.88516 5.94334 6.07605 6.17429 6.25860 6.38818 6.40316 6.56036 6.59276 6.61210 6.81434 7.16878 7.32373 7.39556 7.47027 7.66849 7.94185 8.24716 8.95243 9.58296 11.04859 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.006099 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.790383 B = 4590.177759 C = 5543.069545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 N -0.990 5.990 4 C 0.258 3.742 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.778 3.222 14 O -0.955 6.955 15 O -1.002 7.002 16 N -1.115 6.115 17 C 0.164 3.836 18 C -0.136 4.136 19 C 0.077 3.923 20 O -0.387 6.387 21 C 0.032 3.968 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.163 4.163 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.408 0.592 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 1.527 12.076 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 N -0.832 5.832 4 C 0.136 3.864 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.786 3.214 14 O -0.938 6.938 15 O -0.986 6.986 16 N -0.872 5.872 17 C 0.074 3.926 18 C -0.174 4.174 19 C 0.000 4.000 20 O -0.306 6.306 21 C -0.064 4.064 22 C -0.172 4.172 23 C -0.174 4.174 24 C -0.201 4.201 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.241 0.759 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.372 1.864 11.944 15.296 hybrid contribution 0.340 -0.462 -0.005 0.573 sum -9.032 1.402 11.938 15.036 Atomic orbital electron populations 1.22348 0.97292 1.01292 1.02285 1.21126 0.93008 0.83359 1.03433 1.57721 1.80934 1.21294 1.23270 1.19093 0.97177 0.91380 0.78767 1.21490 1.02486 1.27452 1.05440 0.92337 1.24893 0.97157 0.94830 0.96950 1.69911 1.35942 1.29966 1.17408 0.86560 0.84205 0.77781 0.79275 1.20714 1.21096 1.19799 1.02088 0.73314 0.73292 0.72715 1.93630 1.64346 1.52484 1.83335 1.93530 1.80710 1.58140 1.66233 1.56048 1.47467 1.47486 1.36151 1.20929 0.91205 0.86298 0.94175 1.22105 1.01214 0.96058 0.98041 1.22347 0.93694 0.86211 0.97725 1.87903 1.69970 1.41439 1.31266 1.22692 0.97110 0.98944 0.87703 1.23270 0.94587 1.00159 0.99155 1.22849 0.97932 0.98996 0.97654 1.23731 0.96012 1.04186 0.96189 0.91856 0.92380 0.92933 0.89742 0.90884 0.94817 0.93829 0.92758 0.75933 0.86963 0.90150 0.94290 0.93516 0.94642 0.94228 0.89901 0.91306 0.89005 0.91453 0.90202 0.88715 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.01 37.16 0.33 -1.98 16 2 C 0.12 1.97 6.41 -4.04 -0.03 1.95 16 3 N -0.99 -19.62 1.85 -115.66 -0.21 -19.83 16 4 C 0.26 6.12 3.36 -5.19 -0.02 6.10 16 5 C -0.53 -14.55 9.38 -34.44 -0.32 -14.87 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 S 2.78 53.88 6.07 -107.50 -0.65 53.22 16 14 O -0.95 -21.99 13.02 -57.17 -0.74 -22.73 16 15 O -1.00 -20.94 16.79 -57.17 -0.96 -21.90 16 16 N -1.11 -15.90 5.07 1.19 0.01 -15.90 16 17 C 0.16 2.24 0.84 -131.01 -0.11 2.13 16 18 C -0.14 -2.19 4.36 -26.73 -0.12 -2.30 16 19 C 0.08 1.18 5.51 37.16 0.20 1.39 16 20 O -0.39 -6.45 10.70 -35.23 -0.38 -6.83 16 21 C 0.03 0.40 11.01 101.05 1.11 1.51 16 22 C -0.13 -1.37 7.04 -25.78 -0.18 -1.55 16 23 C -0.14 -1.45 7.99 -25.77 -0.21 -1.66 16 24 C -0.16 -2.25 6.74 -25.92 -0.17 -2.42 16 25 H 0.06 0.89 7.71 -51.93 -0.40 0.49 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.64 6.83 -51.93 -0.35 0.29 16 28 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 29 H 0.07 1.18 6.97 -51.93 -0.36 0.82 16 30 H 0.03 0.82 7.93 -51.93 -0.41 0.40 16 31 H 0.04 1.10 6.52 -51.93 -0.34 0.76 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.41 4.67 8.76 -34.46 -0.30 4.37 16 34 H 0.11 2.29 5.45 -51.93 -0.28 2.01 16 35 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.04 0.49 7.87 -51.93 -0.41 0.08 16 37 H 0.05 0.77 7.12 -51.93 -0.37 0.40 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.81 6.97 -51.93 -0.36 0.45 16 45 H 0.09 1.31 8.10 -51.93 -0.42 0.89 16 46 H 0.10 1.54 2.97 -51.93 -0.15 1.38 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -32.99 367.15 -8.80 -41.79 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.51 Total: 4.66 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 0.40 Total: -10.00 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.53 Total: -60.55 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -2.08 Total: -51.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 53.88 SS G_CDS: -0.65 Total: 53.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.99 -8.80 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337131298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.023 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds