Wall clock time and date at job start Tue Mar 31 2020 12:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00321 * 2 1 4 4 H 1.09005 * 109.47424 * 29.99654 * 3 2 1 5 5 C 1.53008 * 109.47019 * 269.99718 * 3 2 1 6 6 C 1.52996 * 109.46993 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47273 * 60.00411 * 6 5 3 8 8 C 1.53008 * 109.46775 * 299.99723 * 7 6 5 9 9 C 1.52996 * 109.46993 * 60.00106 * 8 7 6 10 10 H 1.09008 * 109.47077 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47213 * 59.99881 * 9 8 7 12 12 S 1.65597 * 119.99926 * 95.27634 * 11 9 8 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 9 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 9 15 15 N 1.65605 * 107.21939 * 64.71969 * 12 11 9 16 16 C 1.46494 * 120.00164 * 270.00117 * 15 12 11 17 17 C 1.46505 * 119.99527 * 90.00151 * 15 12 11 18 18 H 1.09000 * 109.47373 * 0.02562 * 17 15 12 19 19 C 1.52995 * 109.47228 * 239.99942 * 17 15 12 20 20 C 1.50699 * 109.46858 * 120.00063 * 17 15 12 21 21 H 1.08001 * 120.00121 * 359.97438 * 20 17 15 22 22 C 1.37883 * 119.99804 * 180.02562 * 20 17 15 23 23 N 1.31511 * 119.99947 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 119.99773 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47444 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47096 * 119.99922 * 24 22 20 27 27 H 1.48504 * 109.46750 * 239.99769 * 24 22 20 28 28 H 1.08998 * 109.46697 * 300.00613 * 1 2 3 29 29 H 1.09007 * 109.46635 * 59.99916 * 1 2 3 30 30 H 1.08999 * 109.47571 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.46806 * 300.00130 * 5 3 2 32 32 H 1.09003 * 109.46860 * 60.00190 * 5 3 2 33 33 H 1.08997 * 109.47009 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.47504 * 299.99969 * 6 5 3 35 35 H 1.08991 * 109.47367 * 59.99273 * 7 6 5 36 36 H 1.08996 * 109.46986 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.46970 * 299.99810 * 8 7 6 38 38 H 1.08996 * 109.46900 * 180.02562 * 8 7 6 39 39 H 0.97001 * 119.99790 * 274.99423 * 11 9 8 40 40 H 1.09000 * 109.47247 * 90.00131 * 16 15 12 41 41 H 1.09005 * 109.46794 * 210.00078 * 16 15 12 42 42 H 1.08998 * 109.47246 * 330.00180 * 16 15 12 43 43 H 1.09002 * 109.47103 * 59.99601 * 19 17 15 44 44 H 1.08997 * 109.47761 * 180.02562 * 19 17 15 45 45 H 1.09000 * 109.47317 * 300.00492 * 19 17 15 46 46 H 0.97000 * 119.99601 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2178 1.7712 -1.4426 6 6 2.8396 3.1692 -1.4426 7 6 4.1883 3.1275 -0.7212 8 6 3.9807 2.6617 0.7214 9 6 3.3590 1.2637 0.7214 10 1 3.2107 0.9320 1.7492 11 7 4.2535 0.3314 0.0310 12 16 5.3260 -0.5838 0.8997 13 8 6.0087 -1.4019 -0.0403 14 8 5.9926 0.3087 1.7820 15 7 4.4382 -1.6069 1.8524 16 6 4.0374 -1.1912 3.1987 17 6 4.0538 -2.9279 1.3487 18 1 4.4392 -3.0575 0.3374 19 6 2.5283 -3.0433 1.3323 20 6 4.6286 -3.9941 2.2453 21 1 5.2213 -3.7156 3.1041 22 6 4.3986 -5.3251 1.9686 23 7 3.6773 -5.6642 0.9225 24 14 5.1105 -6.6467 3.0804 25 1 5.8773 -6.0083 4.1801 26 1 4.0072 -7.4594 3.6525 27 1 6.0135 -7.5232 2.2918 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 2.8830 1.0773 -1.9563 32 1 1.2570 1.8014 -1.9564 33 1 2.9870 3.5012 -2.4702 34 1 2.1740 3.8629 -0.9289 35 1 4.8538 2.4338 -1.2347 36 1 4.6310 4.1235 -0.7208 37 1 3.3151 3.3554 1.2351 38 1 4.9414 2.6324 1.2355 39 1 4.2148 0.2471 -0.9345 40 1 3.0705 -0.6902 3.1515 41 1 3.9615 -2.0678 3.8421 42 1 4.7820 -0.5062 3.6042 43 1 2.1125 -2.2720 0.6839 44 1 2.2422 -4.0262 0.9580 45 1 2.1432 -2.9138 2.3437 46 1 3.5158 -6.6006 0.7277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337740493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:46 Heat of formation + Delta-G solvation = -131.841529 kcal Electronic energy + Delta-G solvation = -28031.620378 eV Core-core repulsion = 24275.857048 eV Total energy + Delta-G solvation = -3755.763330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.66445 -36.70880 -36.42118 -36.01027 -35.10759 -33.42313 -32.47913 -30.26553 -29.05144 -28.82755 -26.34931 -25.36931 -25.05493 -22.70818 -22.27974 -20.68425 -19.96709 -18.44777 -17.38911 -16.82792 -16.61313 -16.26953 -15.81201 -15.48441 -15.06640 -14.68966 -14.65231 -14.26004 -13.76689 -13.38645 -13.24948 -13.11990 -12.73606 -12.49410 -12.48629 -12.29908 -11.90498 -11.72066 -11.65898 -11.39402 -11.24125 -11.19597 -11.14654 -11.10901 -10.82505 -10.76628 -10.74719 -10.70688 -10.41010 -10.29503 -10.07873 -9.97475 -9.44863 -9.17755 -9.07512 -8.36880 -7.82638 -5.98789 -4.04824 1.36565 3.32030 3.40002 3.44119 3.55350 3.76914 4.23867 4.46530 4.55095 4.63222 4.84843 5.03338 5.04601 5.09538 5.18020 5.26706 5.32624 5.34513 5.36025 5.39849 5.48422 5.64491 5.76164 5.79664 5.84077 5.91632 5.92582 6.03710 6.15192 6.19524 6.23700 6.34771 6.47762 6.79034 7.00172 7.09179 7.22830 7.24923 7.35598 7.65080 7.76231 7.92300 8.18717 8.39807 8.97376 9.60113 11.06598 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.004867 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.698605 B = 5751.694840 C = 6541.333823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.084 3.916 4 H 0.067 0.933 5 C -0.141 4.141 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.136 4.136 9 C 0.166 3.834 10 H 0.088 0.912 11 N -1.117 6.117 12 S 2.779 3.221 13 O -0.978 6.978 14 O -1.000 7.000 15 N -0.985 5.985 16 C 0.097 3.903 17 C 0.272 3.728 18 H 0.056 0.944 19 C -0.146 4.146 20 C -0.518 4.518 21 H 0.061 0.939 22 C 0.063 3.937 23 N -0.889 5.889 24 Si 0.896 3.104 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.284 1.284 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.410 0.590 40 H 0.035 0.965 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.027 0.973 44 H 0.086 0.914 45 H 0.026 0.974 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 17.524 -2.601 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.025 3.975 4 H 0.085 0.915 5 C -0.179 4.179 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.176 4.176 9 C 0.057 3.943 10 H 0.106 0.894 11 N -0.875 5.875 12 S 2.788 3.212 13 O -0.962 6.962 14 O -0.983 6.983 15 N -0.827 5.827 16 C -0.050 4.050 17 C 0.169 3.831 18 H 0.074 0.926 19 C -0.205 4.205 20 C -0.558 4.558 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.210 1.210 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.244 0.756 40 H 0.054 0.946 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.046 0.954 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.190 17.269 -2.532 18.519 hybrid contribution -0.465 -0.703 0.151 0.856 sum -6.655 16.566 -2.381 18.010 Atomic orbital electron populations 1.22777 0.81640 1.02951 0.99145 1.88119 1.18924 1.26222 1.94830 1.22358 0.94152 0.85452 0.95570 0.91544 1.22012 1.01477 0.97172 0.97288 1.21511 0.96906 0.96348 1.00617 1.21514 0.97182 1.01281 0.95806 1.22066 1.02504 0.95476 0.97521 1.20691 0.87911 0.89623 0.96036 0.89424 1.56166 1.56173 1.55820 1.19368 1.01903 0.73652 0.72500 0.73127 1.93604 1.71709 1.67734 1.63186 1.93516 1.72538 1.66023 1.66227 1.57571 1.72483 1.28578 1.24099 1.21300 0.97986 1.00875 0.84797 1.18671 0.92546 0.76398 0.95506 0.92639 1.22073 0.97555 1.02181 0.98724 1.21419 1.32206 0.90502 1.11703 0.92040 1.24896 0.95146 0.98473 0.95380 1.69891 1.38902 1.17234 1.26773 0.86484 0.78821 0.81678 0.80653 1.19783 1.21084 1.20981 0.94412 0.94622 0.89433 0.90799 0.91768 0.91782 0.92048 0.91442 0.91852 0.91142 0.89714 0.75567 0.94613 0.89986 0.92126 0.95401 0.89583 0.95467 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.36 -4.97 9.17 -35.23 -0.32 -5.29 16 3 C 0.08 0.94 2.37 -26.73 -0.06 0.88 16 4 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 5 C -0.14 -1.39 5.35 -26.73 -0.14 -1.54 16 6 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 7 C -0.12 -1.16 5.77 -26.73 -0.15 -1.31 16 8 C -0.14 -1.48 5.64 -26.73 -0.15 -1.63 16 9 C 0.17 2.11 2.70 -67.93 -0.18 1.93 16 10 H 0.09 1.16 6.59 -51.92 -0.34 0.82 16 11 N -1.12 -17.10 4.66 -4.89 -0.02 -17.13 16 12 S 2.78 55.64 6.04 -107.50 -0.65 54.99 16 13 O -0.98 -23.53 16.70 -57.17 -0.95 -24.48 16 14 O -1.00 -20.59 16.04 -57.17 -0.92 -21.51 16 15 N -0.98 -20.89 3.12 -115.86 -0.36 -21.26 16 16 C 0.10 1.76 9.06 59.84 0.54 2.31 16 17 C 0.27 6.82 2.62 -69.08 -0.18 6.64 16 18 H 0.06 1.56 6.91 -51.93 -0.36 1.21 16 19 C -0.15 -3.41 8.97 37.15 0.33 -3.07 16 20 C -0.52 -14.25 7.99 -34.44 -0.28 -14.52 16 21 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 24 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.04 0.32 7.87 -51.92 -0.41 -0.09 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 32 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.72 7.44 -51.93 -0.39 0.33 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.06 7.67 -51.93 -0.40 0.66 16 39 H 0.41 5.83 6.82 -34.47 -0.23 5.59 16 40 H 0.04 0.56 7.40 -51.93 -0.38 0.17 16 41 H 0.08 1.57 7.02 -51.93 -0.36 1.21 16 42 H 0.06 1.03 7.02 -51.93 -0.36 0.66 16 43 H 0.03 0.58 7.07 -51.93 -0.37 0.22 16 44 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 45 H 0.03 0.60 7.67 -51.93 -0.40 0.20 16 46 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -32.81 362.58 -9.12 -41.93 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.53 Total: 3.81 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.57 Total: -8.36 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.24 Total: -63.01 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -2.19 Total: -51.28 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 55.64 SS G_CDS: -0.65 Total: 54.99 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.81 -9.12 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337740493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.914 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds