Wall clock time and date at job start Tue Mar 31 2020 12:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00374 * 2 1 4 4 H 1.09005 * 109.46916 * 30.00038 * 3 2 1 5 5 C 1.53002 * 109.46949 * 270.00176 * 3 2 1 6 6 C 1.53003 * 109.46793 * 179.97438 * 5 3 2 7 7 C 1.52991 * 109.47314 * 60.00248 * 6 5 3 8 8 C 1.53002 * 109.46988 * 299.99632 * 7 6 5 9 9 C 1.52991 * 109.47474 * 150.00231 * 3 2 1 10 10 H 1.08999 * 109.47629 * 59.99956 * 9 3 2 11 11 N 1.46504 * 109.47168 * 299.99833 * 9 3 2 12 12 S 1.65600 * 119.99939 * 145.00695 * 11 9 3 13 13 O 1.42097 * 106.40067 * 48.88198 * 12 11 9 14 14 O 1.42105 * 106.40207 * 181.80316 * 12 11 9 15 15 N 1.65603 * 107.22116 * 295.33996 * 12 11 9 16 16 C 1.46500 * 119.99817 * 95.92442 * 15 12 11 17 17 C 1.46504 * 120.00023 * 275.92454 * 15 12 11 18 18 H 1.08999 * 109.47316 * 358.35191 * 17 15 12 19 19 C 1.53002 * 109.46974 * 238.34812 * 17 15 12 20 20 C 1.50702 * 109.46918 * 118.34668 * 17 15 12 21 21 H 1.08007 * 119.99907 * 30.31302 * 20 17 15 22 22 C 1.37875 * 120.00080 * 210.30684 * 20 17 15 23 23 N 1.31511 * 120.00306 * 182.08458 * 22 20 17 24 24 Si 1.86797 * 119.99818 * 2.08751 * 22 20 17 25 25 H 1.48497 * 109.47073 * 89.34993 * 24 22 20 26 26 H 1.48500 * 109.47017 * 209.34940 * 24 22 20 27 27 H 1.48500 * 109.47678 * 329.35040 * 24 22 20 28 28 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46779 * 299.99613 * 1 2 3 30 30 H 1.08996 * 109.47197 * 59.99768 * 1 2 3 31 31 H 1.09005 * 109.46992 * 60.00135 * 5 3 2 32 32 H 1.08997 * 109.47471 * 299.99881 * 5 3 2 33 33 H 1.08999 * 109.47044 * 299.99557 * 6 5 3 34 34 H 1.09000 * 109.46749 * 180.02562 * 6 5 3 35 35 H 1.08994 * 109.47527 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47206 * 59.99697 * 7 6 5 37 37 H 1.08997 * 109.47471 * 299.99876 * 8 7 6 38 38 H 1.09005 * 109.46992 * 179.97438 * 8 7 6 39 39 H 0.97004 * 119.99934 * 325.01986 * 11 9 3 40 40 H 1.08996 * 109.47142 * 90.00043 * 16 15 12 41 41 H 1.09001 * 109.46938 * 210.00340 * 16 15 12 42 42 H 1.09003 * 109.47129 * 329.99766 * 16 15 12 43 43 H 1.09003 * 109.47083 * 303.05717 * 19 17 15 44 44 H 1.09000 * 109.46818 * 63.05806 * 19 17 15 45 45 H 1.08996 * 109.46750 * 183.05757 * 19 17 15 46 46 H 0.96998 * 120.00434 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 2.8396 3.1692 -1.4425 7 6 4.1881 3.1276 -0.7212 8 6 3.9807 2.6617 0.7213 9 6 3.3589 1.2632 0.7211 10 1 4.0242 0.5693 0.2074 11 7 3.1604 0.8171 2.1024 12 16 4.3055 -0.1236 2.8414 13 8 5.5551 0.5144 2.6164 14 8 3.8060 -0.4190 4.1386 15 7 4.3609 -1.5622 2.0230 16 6 5.3619 -1.7699 0.9737 17 6 3.4088 -2.6272 2.3482 18 1 2.7664 -2.3027 3.1669 19 6 4.1735 -3.8844 2.7673 20 6 2.5643 -2.9328 1.1380 21 1 2.9732 -2.8013 0.1470 22 6 1.2699 -3.3805 1.2959 23 7 0.5466 -3.6863 0.2410 24 14 0.5434 -3.5525 3.0082 25 1 -0.0995 -2.2737 3.4038 26 1 -0.4706 -4.6374 3.0089 27 1 1.6227 -3.8831 3.9730 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.2568 1.8014 -1.9563 32 1 2.8829 1.0774 -1.9564 33 1 2.1739 3.8629 -0.9288 34 1 2.9869 3.5013 -2.4702 35 1 4.6313 4.1233 -0.7215 36 1 4.8537 2.4338 -1.2349 37 1 3.3152 3.3554 1.2351 38 1 4.9416 2.6316 1.2351 39 1 2.3581 1.0727 2.5840 40 1 6.2653 -2.1937 1.4122 41 1 4.9658 -2.4551 0.2242 42 1 5.5993 -0.8154 0.5039 43 1 4.8558 -4.1776 1.9694 44 1 4.7420 -3.6783 3.6742 45 1 3.4673 -4.6927 2.9569 46 1 -0.3640 -4.0016 0.3520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337740495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:49 Heat of formation + Delta-G solvation = -130.554018 kcal Electronic energy + Delta-G solvation = -28512.767205 eV Core-core repulsion = 24757.059705 eV Total energy + Delta-G solvation = -3755.707500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.22682 -36.69407 -36.22114 -36.02192 -35.25426 -33.92885 -32.36320 -29.95764 -29.84463 -28.41880 -25.81484 -25.61668 -25.00757 -22.33872 -21.97576 -20.66960 -20.01875 -18.63938 -17.39841 -17.06188 -16.53354 -16.27789 -15.92065 -15.19876 -14.85295 -14.47149 -14.28504 -13.86086 -13.61252 -13.52231 -13.25452 -13.01282 -12.72786 -12.60444 -12.42591 -12.38097 -11.91859 -11.78969 -11.68620 -11.53382 -11.36202 -11.32302 -11.14422 -11.11228 -10.96547 -10.75267 -10.65387 -10.56836 -10.48777 -10.32115 -10.07447 -9.73867 -9.36184 -9.13786 -8.85312 -8.52092 -7.95566 -6.06105 -4.02707 1.28785 3.26431 3.35798 3.44538 3.49105 4.11618 4.18369 4.41494 4.77823 4.84580 5.01385 5.01901 5.22675 5.26351 5.27100 5.38097 5.42318 5.51785 5.61502 5.70612 5.76588 5.87143 5.90426 5.96255 6.07638 6.11315 6.15217 6.15601 6.20180 6.28115 6.37654 6.41944 6.51729 6.52560 6.58393 6.64841 6.75754 7.02361 7.26784 7.36730 7.58395 7.76429 7.82681 8.53685 9.01840 9.56469 11.05764 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012798 B = 0.007426 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.275247 B = 3769.608756 C = 5017.903713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.335 6.335 3 C 0.080 3.920 4 H 0.055 0.945 5 C -0.140 4.140 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.137 4.137 9 C 0.169 3.831 10 H 0.090 0.910 11 N -1.115 6.115 12 S 2.779 3.221 13 O -0.997 6.997 14 O -0.992 6.992 15 N -0.982 5.982 16 C 0.106 3.894 17 C 0.238 3.762 18 H 0.049 0.951 19 C -0.145 4.145 20 C -0.496 4.496 21 H 0.084 0.916 22 C 0.086 3.914 23 N -0.888 5.888 24 Si 0.848 3.152 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.260 1.260 28 H 0.098 0.902 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.409 0.591 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 11.752 -2.831 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.252 6.252 3 C 0.020 3.980 4 H 0.073 0.927 5 C -0.178 4.178 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.176 4.176 9 C 0.061 3.939 10 H 0.108 0.892 11 N -0.871 5.871 12 S 2.789 3.211 13 O -0.981 6.981 14 O -0.976 6.976 15 N -0.824 5.824 16 C -0.041 4.041 17 C 0.134 3.866 18 H 0.067 0.933 19 C -0.205 4.205 20 C -0.536 4.536 21 H 0.102 0.898 22 C -0.117 4.117 23 N -0.526 5.526 24 Si 0.675 3.325 25 H -0.201 1.201 26 H -0.214 1.214 27 H -0.184 1.184 28 H 0.116 0.884 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.241 0.759 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.780 11.700 -2.208 12.492 hybrid contribution -1.539 0.082 0.720 1.701 sum 2.241 11.782 -1.489 12.086 Atomic orbital electron populations 1.22750 0.81842 1.03697 0.97569 1.88329 1.18634 1.23786 1.94448 1.22318 0.94246 0.86871 0.94576 0.92659 1.22042 1.01629 0.96750 0.97408 1.21533 0.96753 0.96829 1.00418 1.21528 0.97347 1.01382 0.95391 1.22115 1.02120 0.96141 0.97231 1.20697 0.96391 0.95561 0.81210 0.89196 1.55887 1.38847 1.69031 1.23333 1.01901 0.73061 0.72912 0.73234 1.93535 1.42320 1.75640 1.86582 1.93567 1.81389 1.84613 1.38035 1.57718 1.43520 1.29984 1.51194 1.21229 0.90189 1.01363 0.91275 1.19045 0.86871 0.83812 0.96867 0.93291 1.22221 1.00043 0.99521 0.98744 1.21079 0.96481 1.43040 0.92953 0.89798 1.24779 0.96642 0.94823 0.95444 1.69896 1.09381 1.44889 1.28471 0.87338 0.79946 0.78325 0.86869 1.20134 1.21368 1.18437 0.88355 0.95569 0.95595 0.91697 0.90676 0.92157 0.91813 0.91710 0.91467 0.91606 0.90049 0.75868 0.94050 0.90040 0.92895 0.92997 0.95573 0.92642 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.82 101.05 1.09 1.75 16 2 O -0.33 -6.30 10.21 -35.23 -0.36 -6.66 16 3 C 0.08 1.18 2.18 -26.73 -0.06 1.12 16 4 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 5 C -0.14 -1.74 5.54 -26.73 -0.15 -1.89 16 6 C -0.12 -1.18 5.92 -26.73 -0.16 -1.33 16 7 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 8 C -0.14 -1.71 5.53 -26.70 -0.15 -1.85 16 9 C 0.17 2.55 2.38 -67.91 -0.16 2.39 16 10 H 0.09 1.44 6.80 -51.93 -0.35 1.09 16 11 N -1.11 -18.71 5.39 -4.87 -0.03 -18.74 16 12 S 2.78 54.68 5.99 -107.50 -0.64 54.04 16 13 O -1.00 -19.95 16.29 -57.17 -0.93 -20.88 16 14 O -0.99 -22.40 16.88 -57.17 -0.97 -23.36 16 15 N -0.98 -19.96 3.12 -115.85 -0.36 -20.32 16 16 C 0.11 1.85 9.06 59.85 0.54 2.40 16 17 C 0.24 5.47 2.16 -69.08 -0.15 5.32 16 18 H 0.05 1.21 4.53 -51.93 -0.24 0.98 16 19 C -0.15 -3.08 8.93 37.16 0.33 -2.75 16 20 C -0.50 -12.55 8.73 -34.44 -0.30 -12.85 16 21 H 0.08 2.30 6.95 -52.48 -0.36 1.93 16 22 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 23 N -0.89 -24.45 13.96 55.43 0.77 -23.68 16 24 Si 0.85 20.56 26.45 -169.99 -4.50 16.07 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.26 -6.22 6.24 56.52 0.35 -5.87 16 28 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 29 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.03 0.38 7.87 -51.93 -0.41 -0.03 16 31 H 0.06 0.78 7.87 -51.93 -0.41 0.37 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.11 7.64 -51.93 -0.40 0.71 16 39 H 0.41 6.33 8.84 -34.47 -0.30 6.02 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.47 6.70 -51.93 -0.35 1.12 16 42 H 0.05 0.83 6.63 -51.93 -0.34 0.49 16 43 H 0.05 1.02 7.53 -51.93 -0.39 0.63 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 1.19 7.18 -51.93 -0.37 0.82 16 46 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -30.50 367.37 -8.63 -39.12 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.74 Total: 5.81 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 0.59 Total: -6.93 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.39 Total: -62.74 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -2.26 Total: -50.91 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.50 Total: 16.07 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.64 Total: 54.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.50 -8.63 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337740495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.430 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds