Wall clock time and date at job start Tue Mar 31 2020 12:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00094 * 2 1 4 4 H 1.09002 * 109.47002 * 29.99905 * 3 2 1 5 5 C 1.52999 * 109.47616 * 270.00173 * 3 2 1 6 6 C 1.52997 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47294 * 60.00190 * 9 8 7 12 12 S 1.65601 * 120.00134 * 94.99688 * 11 9 8 13 13 O 1.42097 * 106.40279 * 178.54388 * 12 11 9 14 14 O 1.42098 * 106.40154 * 311.46098 * 12 11 9 15 15 N 1.65604 * 107.21615 * 65.00212 * 12 11 9 16 16 C 1.46503 * 119.99847 * 90.00418 * 15 12 11 17 17 C 1.46493 * 120.00080 * 269.99991 * 15 12 11 18 18 H 1.09007 * 109.46972 * 359.97438 * 17 15 12 19 19 C 1.52993 * 109.47266 * 119.99897 * 17 15 12 20 20 C 1.50703 * 109.47060 * 240.00283 * 17 15 12 21 21 H 1.07990 * 119.99984 * 0.02562 * 20 17 15 22 22 C 1.37878 * 119.99773 * 180.02562 * 20 17 15 23 23 N 1.31520 * 120.00280 * 359.97438 * 22 20 17 24 24 Si 1.86796 * 119.99869 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47345 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47250 * 120.00002 * 24 22 20 27 27 H 1.48505 * 109.47367 * 239.99729 * 24 22 20 28 28 H 1.09005 * 109.47119 * 59.99619 * 1 2 3 29 29 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47707 * 300.00141 * 1 2 3 31 31 H 1.08996 * 109.46929 * 59.99102 * 5 3 2 32 32 H 1.09002 * 109.46716 * 299.99907 * 5 3 2 33 33 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 34 34 H 1.09001 * 109.46832 * 179.97438 * 6 5 3 35 35 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 36 36 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 37 37 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 39 39 H 0.97006 * 119.99718 * 274.99830 * 11 9 8 40 40 H 1.08994 * 109.47070 * 89.99433 * 16 15 12 41 41 H 1.08997 * 109.46700 * 210.00200 * 16 15 12 42 42 H 1.09000 * 109.46819 * 329.99412 * 16 15 12 43 43 H 1.09007 * 109.47088 * 60.00116 * 19 17 15 44 44 H 1.09003 * 109.47426 * 179.97438 * 19 17 15 45 45 H 1.08994 * 109.47445 * 300.00304 * 19 17 15 46 46 H 0.96996 * 119.99637 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4424 6 6 2.8394 3.1694 -1.4424 7 6 4.1880 3.1278 -0.7209 8 6 3.9805 2.6618 0.7216 9 6 3.3588 1.2639 0.7215 10 1 3.2106 0.9321 1.7492 11 7 4.2534 0.3316 0.0311 12 16 5.3307 -0.5786 0.8991 13 8 6.0171 -1.3931 -0.0414 14 8 5.9933 0.3169 1.7812 15 7 4.4483 -1.6063 1.8518 16 6 4.0701 -2.9289 1.3480 17 6 4.0459 -1.1928 3.1984 18 1 4.4159 -0.1865 3.3952 19 6 2.5195 -1.2046 3.3008 20 6 4.6248 -2.1473 4.2109 21 1 5.2319 -2.9783 3.8840 22 6 4.3791 -1.9593 5.5545 23 7 3.6401 -0.9469 5.9526 24 14 5.0960 -3.1427 6.8094 25 1 5.8837 -4.1892 6.1096 26 1 5.9795 -2.3989 7.7431 27 1 3.9943 -3.7813 7.5735 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.2569 1.8014 -1.9563 32 1 2.8829 1.0776 -1.9563 33 1 2.1737 3.8631 -0.9287 34 1 2.9875 3.5012 -2.4700 35 1 4.8535 2.4342 -1.2346 36 1 4.6307 4.1239 -0.7205 37 1 4.9411 2.6326 1.2357 38 1 3.3148 3.3555 1.2353 39 1 4.2147 0.2474 -0.9345 40 1 4.8459 -3.6506 1.6037 41 1 3.1266 -3.2339 1.8006 42 1 3.9564 -2.8862 0.2648 43 1 2.1499 -2.2111 3.1041 44 1 2.2201 -0.8974 4.3028 45 1 2.1008 -0.5144 2.5685 46 1 3.4676 -0.8145 6.8979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337740501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:55 Heat of formation + Delta-G solvation = -131.530917 kcal Electronic energy + Delta-G solvation = -28170.813467 eV Core-core repulsion = 24415.063606 eV Total energy + Delta-G solvation = -3755.749861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.61962 -36.69161 -36.43165 -36.04667 -35.09425 -33.38296 -32.50187 -30.20605 -29.05277 -28.82054 -26.34712 -25.46402 -25.08271 -22.63326 -22.21227 -20.72209 -19.88146 -18.47350 -17.42275 -16.78701 -16.51380 -16.16526 -15.93985 -15.48365 -15.03623 -14.72366 -14.55992 -14.25585 -13.71113 -13.44420 -13.21935 -13.08641 -12.77594 -12.62322 -12.43093 -12.19282 -11.88067 -11.66958 -11.60491 -11.39711 -11.26575 -11.17200 -11.14884 -11.11380 -10.91300 -10.74127 -10.72098 -10.64971 -10.34731 -10.31629 -10.19161 -9.95035 -9.40279 -9.19530 -9.07612 -8.40173 -7.84976 -6.02760 -4.08093 1.36118 3.30657 3.38735 3.43586 3.58271 3.78109 4.25287 4.44694 4.63044 4.67629 4.89939 5.09164 5.10616 5.16013 5.24114 5.28753 5.34023 5.40393 5.41940 5.47590 5.56609 5.67849 5.72312 5.77962 5.89845 5.95223 5.98189 6.09724 6.22412 6.30326 6.37671 6.42362 6.51990 6.74307 6.89677 6.93279 7.09868 7.23614 7.34329 7.60170 7.73263 7.86617 8.11137 8.35082 8.94546 9.57322 11.02896 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.005067 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.985115 B = 5525.037587 C = 5936.033617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.086 3.914 4 H 0.069 0.931 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.138 4.138 9 C 0.161 3.839 10 H 0.100 0.900 11 N -1.118 6.118 12 S 2.779 3.221 13 O -1.001 7.001 14 O -0.976 6.976 15 N -0.987 5.987 16 C 0.116 3.884 17 C 0.268 3.732 18 H 0.057 0.943 19 C -0.148 4.148 20 C -0.516 4.516 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.896 3.104 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.285 1.285 28 H 0.034 0.966 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.407 0.593 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.032 0.968 44 H 0.089 0.911 45 H 0.018 0.982 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 7.031 -13.795 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.027 3.973 4 H 0.087 0.913 5 C -0.178 4.178 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.177 4.177 9 C 0.053 3.947 10 H 0.118 0.882 11 N -0.876 5.876 12 S 2.788 3.212 13 O -0.985 6.985 14 O -0.959 6.959 15 N -0.830 5.830 16 C -0.031 4.031 17 C 0.165 3.835 18 H 0.074 0.926 19 C -0.207 4.207 20 C -0.555 4.555 21 H 0.080 0.920 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.724 3.276 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.211 1.211 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.240 0.760 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.037 0.963 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.276 7.018 -13.468 16.432 hybrid contribution -0.438 -0.526 0.349 0.769 sum -6.714 6.491 -13.119 16.103 Atomic orbital electron populations 1.22764 0.81670 1.02650 0.99431 1.88030 1.18934 1.26808 1.94865 1.22361 0.94368 0.85192 0.95392 0.91312 1.22003 1.01240 0.97241 0.97295 1.21515 0.97080 0.96303 1.00525 1.21517 0.96980 1.01264 0.95954 1.22066 1.02873 0.95514 0.97228 1.20816 0.87445 0.89646 0.96823 0.88210 1.56139 1.56401 1.56088 1.18984 1.01936 0.73625 0.73087 0.72541 1.93533 1.72171 1.68811 1.64027 1.93589 1.71924 1.65032 1.65404 1.57601 1.72889 1.25446 1.27040 1.21065 1.00991 0.84496 0.96522 1.18714 0.92151 0.96640 0.76015 0.92570 1.22133 0.97796 0.98652 1.02158 1.21399 1.31295 1.12115 0.90731 0.91991 1.24892 0.95124 0.95573 0.98313 1.69870 1.38374 1.29178 1.15633 0.86469 0.78858 0.80983 0.81250 1.19766 1.20970 1.21080 0.94698 0.89766 0.94027 0.91899 0.91059 0.91925 0.91872 0.91635 0.91828 0.89486 0.90934 0.75979 0.93709 0.91132 0.93346 0.94899 0.89253 0.96306 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.42 16 2 O -0.37 -4.95 10.15 -35.23 -0.36 -5.30 16 3 C 0.09 1.03 2.37 -26.73 -0.06 0.97 16 4 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 5 C -0.14 -1.38 5.35 -26.73 -0.14 -1.52 16 6 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 7 C -0.12 -1.26 5.77 -26.73 -0.15 -1.41 16 8 C -0.14 -1.77 5.64 -26.73 -0.15 -1.92 16 9 C 0.16 2.32 2.70 -67.93 -0.18 2.14 16 10 H 0.10 1.70 5.50 -51.93 -0.29 1.42 16 11 N -1.12 -17.18 4.66 -4.89 -0.02 -17.21 16 12 S 2.78 55.85 6.00 -107.50 -0.65 55.21 16 13 O -1.00 -21.60 17.21 -57.17 -0.98 -22.58 16 14 O -0.98 -22.68 15.96 -57.17 -0.91 -23.59 16 15 N -0.99 -21.00 3.12 -115.86 -0.36 -21.36 16 16 C 0.12 2.19 9.53 59.85 0.57 2.76 16 17 C 0.27 6.53 1.91 -69.09 -0.13 6.40 16 18 H 0.06 1.51 6.75 -51.93 -0.35 1.16 16 19 C -0.15 -3.32 8.83 37.15 0.33 -3.00 16 20 C -0.52 -14.01 8.37 -34.44 -0.29 -14.30 16 21 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 23 N -0.89 -24.71 11.32 55.43 0.63 -24.09 16 24 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H 0.03 0.30 7.87 -51.93 -0.41 -0.11 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 32 H 0.07 0.73 6.51 -51.93 -0.34 0.40 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.72 7.44 -51.93 -0.39 0.34 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.31 7.64 -51.93 -0.40 0.91 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.41 5.40 6.82 -34.48 -0.23 5.16 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 42 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 43 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 44 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 45 H 0.02 0.36 6.67 -51.93 -0.35 0.02 16 46 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -32.02 362.48 -9.04 -41.07 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.45 Total: 4.13 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 0.62 Total: -8.04 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.24 Total: -62.65 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -2.25 Total: -51.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 55.85 SS G_CDS: -0.65 Total: 55.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.02 -9.04 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337740501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.464 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds