Wall clock time and date at job start Tue Mar 31 2020 12:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00595 * 2 1 4 4 C 1.52997 * 109.47729 * 175.39398 * 3 2 1 5 5 C 1.53001 * 109.47313 * 174.44219 * 4 3 2 6 6 N 1.46497 * 112.90610 * 43.69379 * 5 4 3 7 7 S 1.65604 * 120.00043 * 59.67986 * 6 5 4 8 8 O 1.42096 * 106.40159 * 176.23578 * 7 6 5 9 9 O 1.42095 * 106.40041 * 309.15754 * 7 6 5 10 10 N 1.65597 * 107.21746 * 62.69558 * 7 6 5 11 11 C 1.46499 * 120.00377 * 261.88233 * 10 7 6 12 12 C 1.46503 * 120.00088 * 81.88723 * 10 7 6 13 13 H 1.09004 * 109.47142 * 359.97438 * 12 10 7 14 14 C 1.53002 * 109.47138 * 239.99806 * 12 10 7 15 15 C 1.50696 * 109.47232 * 119.99764 * 12 10 7 16 16 H 1.07994 * 120.00190 * 0.02562 * 15 12 10 17 17 C 1.37881 * 120.00000 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00035 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00014 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47051 * 90.00047 * 19 17 15 21 21 H 1.48500 * 109.47223 * 209.99704 * 19 17 15 22 22 H 1.48495 * 109.47155 * 329.99983 * 19 17 15 23 23 C 1.53783 * 113.61346 * 174.94594 * 5 4 3 24 24 C 1.53784 * 87.07924 * 139.97917 * 23 5 4 25 25 C 1.53780 * 87.08387 * 334.56957 * 24 23 5 26 26 H 1.09003 * 109.47030 * 184.62568 * 1 2 3 27 27 H 1.08998 * 109.47254 * 304.62706 * 1 2 3 28 28 H 1.09000 * 109.46786 * 64.62551 * 1 2 3 29 29 H 1.09003 * 109.46941 * 55.38628 * 3 2 1 30 30 H 1.09006 * 109.46609 * 295.39659 * 3 2 1 31 31 H 1.09000 * 109.46908 * 54.43813 * 4 3 2 32 32 H 1.09000 * 109.47048 * 294.44122 * 4 3 2 33 33 H 0.96999 * 120.00253 * 239.67969 * 6 5 4 34 34 H 1.09010 * 109.46899 * 94.82928 * 11 10 7 35 35 H 1.08991 * 109.47358 * 214.83273 * 11 10 7 36 36 H 1.08995 * 109.46860 * 334.83689 * 11 10 7 37 37 H 1.08997 * 109.47055 * 299.99742 * 14 12 10 38 38 H 1.09003 * 109.46861 * 59.99872 * 14 12 10 39 39 H 1.09005 * 109.46985 * 179.97438 * 14 12 10 40 40 H 0.96994 * 120.00513 * 179.97438 * 18 17 15 41 41 H 1.08996 * 113.61386 * 25.43007 * 23 5 4 42 42 H 1.09000 * 113.68827 * 254.54015 * 23 5 4 43 43 H 1.09006 * 113.61037 * 89.11519 * 24 23 5 44 44 H 1.08996 * 113.61189 * 220.01921 * 24 23 5 45 45 H 1.08991 * 113.61853 * 139.97999 * 25 24 23 46 46 H 1.09004 * 113.61135 * 270.88778 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5313 1.1865 0.1158 5 6 4.1633 2.5729 -0.0232 6 7 3.4518 3.6029 0.7376 7 16 3.2947 3.4589 2.3799 8 8 2.6449 4.6412 2.8260 9 8 2.7861 2.1542 2.6214 10 7 4.8203 3.4926 3.0230 11 6 5.4972 2.2403 3.3692 12 6 5.4931 4.7747 3.2460 13 1 4.8394 5.5879 2.9303 14 6 6.7892 4.8185 2.4341 15 6 5.8126 4.9264 4.7109 16 1 5.5419 4.1457 5.4062 17 6 6.4504 6.0619 5.1634 18 7 6.7804 7.0125 4.3166 19 14 6.8470 6.2496 6.9791 20 1 8.1930 5.6851 7.2527 21 1 6.8308 7.6892 7.3432 22 1 5.8327 5.5237 7.7850 23 6 5.6846 2.5816 0.2014 24 6 5.7720 3.5794 -0.9655 25 6 4.4551 2.9736 -1.4790 26 1 -0.3633 -1.0243 0.0829 27 1 -0.3633 0.5839 0.8456 28 1 -0.3633 0.4404 -0.9285 29 1 1.6249 1.8748 0.8458 30 1 1.7555 1.8165 -0.9284 31 1 3.9060 0.5354 -0.6740 32 1 3.7898 0.7651 1.0873 33 1 3.0726 4.3692 0.2795 34 1 6.1323 1.9293 2.5397 35 1 6.1090 2.3918 4.2584 36 1 4.7538 1.4682 3.5669 37 1 7.4431 4.0054 2.7495 38 1 6.5581 4.7088 1.3746 39 1 7.2896 5.7727 2.5997 40 1 7.2288 7.8115 4.6349 41 1 6.1622 1.6241 -0.0062 42 1 5.9832 3.0044 1.1607 43 1 5.6824 4.6210 -0.6569 44 1 6.6204 3.4043 -1.6271 45 1 3.7598 3.7131 -1.8760 46 1 4.5966 2.1231 -2.1460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337764814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:50 Heat of formation + Delta-G solvation = -92.580466 kcal Electronic energy + Delta-G solvation = -28033.936172 eV Core-core repulsion = 24279.875329 eV Total energy + Delta-G solvation = -3754.060843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.81101 -37.58657 -36.64201 -36.21158 -35.24937 -32.75501 -32.56962 -30.92408 -29.11615 -26.68524 -26.17022 -25.30216 -25.09088 -24.36209 -21.55148 -20.78158 -19.75692 -18.41683 -17.38975 -16.96372 -16.40918 -16.20947 -15.87831 -15.75671 -15.33118 -14.88507 -14.73873 -14.36090 -13.83268 -13.49955 -13.31900 -13.11051 -12.73335 -12.58421 -12.35401 -12.03020 -11.85049 -11.75330 -11.58821 -11.46773 -11.32690 -11.23794 -11.10525 -10.93206 -10.88888 -10.83312 -10.75809 -10.56438 -10.44023 -10.25124 -10.06174 -9.88080 -9.48985 -9.30683 -9.13621 -8.46714 -7.97359 -6.08521 -4.14760 1.22002 3.27625 3.34836 3.38154 3.43614 3.79722 4.07275 4.39384 4.45520 4.63568 4.88416 4.91809 5.00667 5.20217 5.23288 5.27296 5.30666 5.39325 5.51135 5.63243 5.67573 5.70475 5.71424 5.74807 5.86988 5.97527 6.07199 6.11219 6.22317 6.30619 6.32102 6.41555 6.56380 6.67907 6.79121 6.83294 7.00662 7.18139 7.25454 7.48931 7.60717 7.77427 8.04486 8.26396 8.87038 9.51005 10.97004 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019840 B = 0.004676 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.922816 B = 5986.913078 C = 6708.333540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.069 3.931 4 C -0.120 4.120 5 C 0.161 3.839 6 N -1.113 6.113 7 S 2.777 3.223 8 O -0.978 6.978 9 O -0.988 6.988 10 N -0.987 5.987 11 C 0.089 3.911 12 C 0.272 3.728 13 H 0.052 0.948 14 C -0.153 4.153 15 C -0.519 4.519 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.177 4.177 24 C -0.134 4.134 25 C -0.132 4.132 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.412 0.588 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.020 0.980 39 H 0.091 0.909 40 H 0.263 0.737 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -9.629 -12.497 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.008 4.008 4 C -0.159 4.159 5 C 0.071 3.929 6 N -0.870 5.870 7 S 2.786 3.214 8 O -0.961 6.961 9 O -0.971 6.971 10 N -0.830 5.830 11 C -0.057 4.057 12 C 0.169 3.831 13 H 0.069 0.931 14 C -0.212 4.212 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.215 4.215 24 C -0.172 4.172 25 C -0.171 4.171 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.246 0.754 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.129 0.871 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.819 -9.853 -11.912 16.193 hybrid contribution 0.249 0.886 0.539 1.067 sum -4.570 -8.967 -11.373 15.187 Atomic orbital electron populations 1.22692 0.81597 1.02364 0.99767 1.87814 1.19266 1.28592 1.95396 1.22523 0.94028 0.84377 0.99866 1.21897 0.93858 0.95609 1.04538 1.20933 0.91588 0.86705 0.93705 1.55980 1.70781 1.32665 1.27555 1.02017 0.73759 0.73119 0.72484 1.93624 1.74094 1.49304 1.79125 1.93545 1.78352 1.40659 1.84591 1.57622 1.35610 1.13754 1.76035 1.21461 0.97974 0.84895 1.01382 1.18650 0.90598 0.77823 0.96001 0.93051 1.22241 0.99854 1.03458 0.95654 1.21330 1.38148 1.03911 0.92482 0.91912 1.24894 0.95467 0.95542 0.97933 1.69849 1.40982 1.08056 1.34030 0.86507 0.78621 0.77329 0.85027 1.20665 1.21162 1.19846 1.23967 0.94381 1.00579 1.02590 1.22763 0.97062 0.99714 0.97640 1.23235 0.98210 1.01122 0.94547 0.89977 0.93961 0.94577 0.92275 0.94227 0.90229 0.89180 0.75445 0.93782 0.90129 0.91560 0.94774 0.96141 0.89025 0.92736 0.89271 0.87051 0.89608 0.91455 0.91130 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.69 10.70 -35.23 -0.38 -6.07 16 3 C 0.07 0.96 5.24 37.16 0.19 1.15 16 4 C -0.12 -1.58 4.45 -26.73 -0.12 -1.69 16 5 C 0.16 2.01 0.94 -131.01 -0.12 1.89 16 6 N -1.11 -16.11 4.80 1.19 0.01 -16.11 16 7 S 2.78 52.73 5.81 -107.50 -0.62 52.11 16 8 O -0.98 -22.61 16.98 -57.17 -0.97 -23.58 16 9 O -0.99 -19.17 12.12 -57.17 -0.69 -19.86 16 10 N -0.99 -19.59 1.96 -115.85 -0.23 -19.82 16 11 C 0.09 1.53 9.13 59.85 0.55 2.08 16 12 C 0.27 6.40 2.59 -69.08 -0.18 6.22 16 13 H 0.05 1.35 7.14 -51.93 -0.37 0.98 16 14 C -0.15 -3.27 7.88 37.16 0.29 -2.98 16 15 C -0.52 -13.68 8.03 -34.44 -0.28 -13.96 16 16 H 0.06 1.65 7.25 -52.49 -0.38 1.27 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 19 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.18 -2.21 6.21 -25.92 -0.16 -2.37 16 24 C -0.13 -1.51 7.60 -25.92 -0.20 -1.71 16 25 C -0.13 -1.33 7.35 -25.92 -0.19 -1.52 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.93 5.54 -51.93 -0.29 0.64 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 32 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 33 H 0.41 5.23 8.76 -34.47 -0.30 4.92 16 34 H 0.04 0.65 5.91 -51.92 -0.31 0.34 16 35 H 0.08 1.46 6.97 -51.93 -0.36 1.10 16 36 H 0.07 1.08 6.87 -51.93 -0.36 0.72 16 37 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 38 H 0.02 0.37 5.56 -51.93 -0.29 0.08 16 39 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.11 1.64 1.75 -51.93 -0.09 1.55 16 43 H 0.09 1.08 7.61 -51.93 -0.40 0.68 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 46 H 0.09 0.78 7.90 -51.93 -0.41 0.37 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -31.36 355.28 -8.24 -39.60 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.12 Total: 5.97 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 0.81 Total: -9.82 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.41 Total: -59.63 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -2.04 Total: -49.51 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 52.73 SS G_CDS: -0.62 Total: 52.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.36 -8.24 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337764814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.975 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds