Wall clock time and date at job start Tue Mar 31 2020 12:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99271 * 2 1 4 4 C 1.53001 * 109.46792 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47303 * 184.97070 * 4 3 2 6 6 N 1.46503 * 112.90656 * 310.41581 * 5 4 3 7 7 S 1.65598 * 120.00269 * 295.29490 * 6 5 4 8 8 O 1.42100 * 106.40209 * 46.82549 * 7 6 5 9 9 O 1.42102 * 106.40351 * 179.74540 * 7 6 5 10 10 N 1.65600 * 107.21788 * 293.28874 * 7 6 5 11 11 C 1.46499 * 120.00382 * 97.22698 * 10 7 6 12 12 C 1.46504 * 119.99538 * 277.22233 * 10 7 6 13 13 H 1.08994 * 109.47501 * 4.91354 * 12 10 7 14 14 C 1.53007 * 109.46889 * 124.91140 * 12 10 7 15 15 C 1.50699 * 109.46967 * 244.90760 * 12 10 7 16 16 H 1.07996 * 120.00200 * 0.02562 * 15 12 10 17 17 C 1.37886 * 119.99797 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99873 * 180.02562 * 17 15 12 19 19 Si 1.86799 * 119.99867 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.46861 * 90.00310 * 19 17 15 21 21 H 1.48504 * 109.46955 * 209.99890 * 19 17 15 22 22 H 1.48497 * 109.47431 * 329.99858 * 19 17 15 23 23 C 1.53779 * 113.61658 * 179.16949 * 5 4 3 24 24 C 1.53780 * 87.08110 * 220.02157 * 23 5 4 25 25 C 1.53776 * 87.08205 * 25.43007 * 24 23 5 26 26 H 1.08996 * 109.47476 * 299.99947 * 1 2 3 27 27 H 1.09000 * 109.47230 * 60.00233 * 1 2 3 28 28 H 1.09000 * 109.46749 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47411 * 60.00663 * 3 2 1 30 30 H 1.08998 * 109.47652 * 299.99464 * 3 2 1 31 31 H 1.09004 * 109.47196 * 64.97149 * 4 3 2 32 32 H 1.09005 * 109.47607 * 304.97279 * 4 3 2 33 33 H 0.97005 * 119.99636 * 115.29335 * 6 5 4 34 34 H 1.08994 * 109.47288 * 93.88772 * 11 10 7 35 35 H 1.08999 * 109.46619 * 213.89250 * 11 10 7 36 36 H 1.09005 * 109.46729 * 333.88848 * 11 10 7 37 37 H 1.08993 * 109.46890 * 185.63023 * 14 12 10 38 38 H 1.09004 * 109.46950 * 305.62658 * 14 12 10 39 39 H 1.08996 * 109.46624 * 65.62878 * 14 12 10 40 40 H 0.96996 * 119.99565 * 179.97438 * 18 17 15 41 41 H 1.08993 * 113.62079 * 105.46394 * 23 5 4 42 42 H 1.09009 * 113.61290 * 334.56442 * 23 5 4 43 43 H 1.08996 * 113.61848 * 139.98233 * 24 23 5 44 44 H 1.09005 * 113.60715 * 270.87839 * 24 23 5 45 45 H 1.08992 * 113.61670 * 89.12076 * 25 24 23 46 46 H 1.09005 * 113.61453 * 219.94086 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1571 2.5772 0.1256 6 7 3.5969 3.5394 -0.8265 7 16 3.8190 3.3202 -2.4528 8 8 3.5176 1.9573 -2.7188 9 8 3.1602 4.4019 -3.0972 10 7 5.4358 3.5095 -2.7567 11 6 6.3051 2.3344 -2.8556 12 6 5.9968 4.8521 -2.9267 13 1 5.2239 5.5960 -2.7340 14 6 7.1520 5.0504 -1.9431 15 6 6.5051 5.0093 -4.3366 16 1 6.4185 4.1911 -5.0362 17 6 7.0808 6.1977 -4.7335 18 7 7.5239 6.3351 -5.9641 19 14 7.2312 7.6126 -3.5232 20 1 8.5263 7.5127 -2.8035 21 1 7.1716 8.9014 -4.2585 22 1 6.1154 7.5485 -2.5454 23 6 5.6945 2.5649 0.1562 24 6 5.6036 3.6585 1.2335 25 6 4.2109 3.1004 1.5707 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8465 -0.8900 31 1 3.8636 0.7226 -0.9303 32 1 3.8508 0.5691 0.8430 33 1 3.0959 4.3050 -0.5042 34 1 6.3919 2.0336 -3.8996 35 1 7.2926 2.5791 -2.4646 36 1 5.8773 1.5162 -2.2762 37 1 7.5041 6.0803 -1.9991 38 1 6.8075 4.8387 -0.9308 39 1 7.9670 4.3733 -2.1987 40 1 7.9285 7.1712 -6.2433 41 1 6.1526 2.9040 -0.7728 42 1 6.1165 1.6278 0.5199 43 1 6.3283 3.5395 2.0389 44 1 5.5822 4.6700 0.8280 45 1 4.2271 2.3099 2.3209 46 1 3.4713 3.8721 1.7848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337764815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:54 Heat of formation + Delta-G solvation = -84.790754 kcal Electronic energy + Delta-G solvation = -27991.275044 eV Core-core repulsion = 24237.551988 eV Total energy + Delta-G solvation = -3753.723056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.94504 -37.70814 -36.76053 -36.48091 -35.32506 -32.84466 -32.51870 -31.08428 -30.06979 -26.79910 -26.38424 -25.51869 -24.98451 -24.44922 -21.69586 -20.90706 -19.88991 -18.49880 -17.41053 -17.25989 -16.61805 -16.34914 -16.03549 -15.85174 -15.62146 -15.00024 -14.84148 -14.49141 -13.96804 -13.65628 -13.47011 -13.31507 -12.89121 -12.71555 -12.50569 -12.25519 -12.06603 -11.97262 -11.85824 -11.73855 -11.58340 -11.48297 -11.30049 -11.18253 -11.10564 -11.06064 -10.88801 -10.71162 -10.50612 -10.17882 -10.08143 -9.68428 -9.63228 -9.43665 -9.30296 -8.64317 -8.12597 -6.13043 -4.13235 1.07848 3.19975 3.28161 3.31373 3.34130 3.66203 3.97258 4.32946 4.33679 4.48693 4.73135 4.77345 4.88497 5.07417 5.12988 5.16141 5.19804 5.27507 5.37876 5.45254 5.52192 5.56137 5.57879 5.61777 5.72327 5.83427 5.90850 5.95196 6.05999 6.12004 6.13673 6.19073 6.26417 6.35770 6.43856 6.47210 6.54337 6.76951 7.04907 7.12929 7.25188 7.40703 7.61029 8.46563 8.92110 9.46700 11.00254 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.004800 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.847473 B = 5832.109848 C = 6414.024516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.072 3.928 4 C -0.126 4.126 5 C 0.160 3.840 6 N -1.114 6.114 7 S 2.779 3.221 8 O -0.981 6.981 9 O -0.973 6.973 10 N -0.984 5.984 11 C 0.102 3.898 12 C 0.245 3.755 13 H 0.049 0.951 14 C -0.167 4.167 15 C -0.521 4.521 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.266 1.266 23 C -0.174 4.174 24 C -0.136 4.136 25 C -0.132 4.132 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.413 0.587 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.265 0.735 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 -8.409 17.711 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.004 4.004 4 C -0.165 4.165 5 C 0.070 3.930 6 N -0.871 5.871 7 S 2.788 3.212 8 O -0.965 6.965 9 O -0.957 6.957 10 N -0.826 5.826 11 C -0.044 4.044 12 C 0.141 3.859 13 H 0.066 0.934 14 C -0.225 4.225 15 C -0.560 4.560 16 H 0.100 0.900 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.712 3.288 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.192 1.192 23 C -0.212 4.212 24 C -0.173 4.173 25 C -0.171 4.171 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.246 0.754 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.218 -8.816 16.847 20.338 hybrid contribution 0.050 1.645 0.902 1.877 sum -7.168 -7.171 17.749 20.441 Atomic orbital electron populations 1.22714 0.81459 1.02500 0.99852 1.87853 1.19360 1.28391 1.95390 1.22377 0.94048 0.84270 0.99747 1.21992 0.93729 0.95723 1.05079 1.20949 0.93542 0.87886 0.90639 1.56036 1.69032 1.36047 1.25992 1.02037 0.73349 0.73337 0.72504 1.93562 1.83464 1.35561 1.83900 1.93632 1.73917 1.55993 1.72179 1.57469 1.26546 1.13421 1.85146 1.21319 0.95289 0.85818 1.01989 1.18980 0.92590 0.78108 0.96260 0.93366 1.22576 1.00985 1.00896 0.98073 1.21184 1.39225 1.01045 0.94591 0.90038 1.24905 0.94824 0.98050 0.95117 1.69876 1.40076 1.26293 1.16922 0.86951 0.78690 0.82060 0.81060 1.20393 1.22123 1.19166 1.23887 0.94683 1.00236 1.02434 1.22778 0.96665 0.99194 0.98656 1.23218 0.98200 1.00854 0.94838 0.94397 0.94055 0.89799 0.93836 0.93359 0.88360 0.90116 0.75372 0.92608 0.91106 0.92114 0.93426 0.94166 0.91962 0.92473 0.87953 0.88794 0.91264 0.89694 0.88998 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.26 10.70 -35.23 -0.38 -5.64 16 3 C 0.07 0.91 5.53 37.16 0.21 1.12 16 4 C -0.13 -1.53 4.44 -26.73 -0.12 -1.65 16 5 C 0.16 1.82 0.85 -131.01 -0.11 1.71 16 6 N -1.11 -14.96 4.81 1.19 0.01 -14.96 16 7 S 2.78 51.19 5.95 -107.50 -0.64 50.55 16 8 O -0.98 -18.86 13.68 -57.17 -0.78 -19.64 16 9 O -0.97 -21.93 17.02 -57.17 -0.97 -22.91 16 10 N -0.98 -18.83 2.03 -115.85 -0.24 -19.07 16 11 C 0.10 1.68 7.88 59.85 0.47 2.16 16 12 C 0.25 5.47 2.15 -69.08 -0.15 5.32 16 13 H 0.05 1.14 6.28 -51.93 -0.33 0.81 16 14 C -0.17 -3.20 7.80 37.16 0.29 -2.91 16 15 C -0.52 -14.21 9.03 -34.44 -0.31 -14.52 16 16 H 0.08 2.43 8.04 -52.49 -0.42 2.01 16 17 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 18 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 19 Si 0.88 21.12 24.31 -169.99 -4.13 16.98 16 20 H -0.28 -6.31 6.92 56.52 0.39 -5.91 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 23 C -0.17 -1.91 6.49 -25.92 -0.17 -2.07 16 24 C -0.14 -1.33 7.63 -25.92 -0.20 -1.52 16 25 C -0.13 -1.17 7.34 -25.92 -0.19 -1.36 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.05 0.68 7.20 -51.93 -0.37 0.31 16 31 H 0.10 1.41 6.44 -51.93 -0.33 1.08 16 32 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 33 H 0.41 4.74 8.79 -34.47 -0.30 4.43 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.07 6.10 -51.93 -0.32 0.76 16 36 H 0.06 0.85 6.74 -51.93 -0.35 0.50 16 37 H 0.05 0.97 3.43 -51.93 -0.18 0.79 16 38 H 0.04 0.63 5.79 -51.93 -0.30 0.33 16 39 H 0.06 1.16 6.85 -51.93 -0.36 0.80 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.10 1.31 2.23 -51.93 -0.12 1.19 16 42 H 0.09 0.86 8.10 -51.92 -0.42 0.44 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.92 7.34 -51.93 -0.38 0.54 16 45 H 0.09 0.69 7.97 -51.93 -0.41 0.27 16 46 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -33.75 353.13 -7.44 -41.19 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.14 Total: 4.58 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 0.74 Total: -10.33 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.54 Total: -60.11 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.13 Total: -48.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.13 Total: 16.98 kcal Atomic # 16 Polarization: 51.19 SS G_CDS: -0.64 Total: 50.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.75 -7.44 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337764815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.599 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds