Wall clock time and date at job start Tue Mar 31 2020 12:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47008 * 2 1 4 4 C 1.50693 * 109.47296 * 240.00112 * 2 1 3 5 5 H 1.08008 * 120.00141 * 239.99747 * 4 2 1 6 6 C 1.37875 * 120.00357 * 59.99805 * 4 2 1 7 7 N 1.31517 * 119.99945 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46985 * 59.99816 * 8 6 4 10 10 H 1.48499 * 109.47029 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46955 * 299.99731 * 8 6 4 12 12 N 1.46504 * 109.47126 * 119.99718 * 2 1 3 13 13 C 1.46489 * 120.00051 * 60.00277 * 12 2 1 14 14 S 1.65606 * 119.99819 * 240.00030 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 N 1.65595 * 107.22013 * 269.99910 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 H 1.08998 * 109.46801 * 334.99545 * 18 17 14 20 20 C 1.52999 * 109.47194 * 94.99693 * 18 17 14 21 21 C 1.53005 * 109.47092 * 215.00097 * 18 17 14 22 22 H 1.09002 * 109.47958 * 55.02122 * 21 18 17 23 23 C 1.53085 * 109.47684 * 175.05427 * 21 18 17 24 24 C 1.53180 * 109.15923 * 177.58837 * 23 21 18 25 25 C 1.53178 * 109.03810 * 303.02208 * 24 23 21 26 26 C 1.53094 * 109.16104 * 56.98309 * 25 24 23 27 27 O 1.42895 * 109.47626 * 294.99952 * 21 18 17 28 28 H 1.08995 * 109.46580 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47051 * 299.99860 * 1 2 3 30 30 H 1.08991 * 109.47105 * 60.00326 * 1 2 3 31 31 H 0.96992 * 119.99961 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 33 33 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 34 34 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 35 35 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 36 36 H 1.08996 * 109.47096 * 179.97438 * 20 18 17 37 37 H 1.08998 * 109.47567 * 300.00288 * 20 18 17 38 38 H 1.09004 * 109.46687 * 60.00192 * 20 18 17 39 39 H 1.09000 * 109.52847 * 297.49309 * 23 21 18 40 40 H 1.08998 * 109.52374 * 57.68965 * 23 21 18 41 41 H 1.09003 * 109.54518 * 183.15359 * 24 23 21 42 42 H 1.08998 * 109.61510 * 62.93322 * 24 23 21 43 43 H 1.09001 * 109.52276 * 297.07082 * 25 24 23 44 44 H 1.09004 * 109.52012 * 176.88567 * 25 24 23 45 45 H 1.09003 * 109.47769 * 182.40865 * 26 25 24 46 46 H 1.08992 * 109.48178 * 62.37559 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8261 -0.4207 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0930 1.4281 14 16 2.9705 0.1144 2.2863 15 8 2.8228 -0.5644 3.5260 16 8 2.6904 1.4974 2.1193 17 7 4.5438 -0.1040 1.8181 18 6 5.0140 0.4532 0.5473 19 1 4.1701 0.5699 -0.1326 20 6 5.6604 1.8173 0.7967 21 6 6.0431 -0.4929 -0.0747 22 1 5.6100 -1.4886 -0.1709 23 6 6.4427 0.0261 -1.4584 24 6 7.5168 -0.8925 -2.0489 25 6 8.7060 -0.9547 -1.0854 26 6 8.2188 -1.4359 0.2838 27 8 7.1999 -0.5551 0.7618 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 0.7090 1.1613 -3.4844 32 1 0.7377 -2.1443 1.9994 33 1 1.5296 -2.5968 0.4709 34 1 2.4630 -2.5817 1.9865 35 1 5.1540 -0.6009 2.3852 36 1 6.0106 2.2316 -0.1486 37 1 4.9274 2.4913 1.2399 38 1 6.5044 1.7005 1.4767 39 1 5.5699 0.0326 -2.1112 40 1 6.8384 1.0377 -1.3676 41 1 7.8464 -0.4975 -3.0099 42 1 7.1069 -1.8930 -2.1872 43 1 9.1474 0.0371 -0.9872 44 1 9.4517 -1.6497 -1.4716 45 1 9.0531 -1.4412 0.9852 46 1 7.8144 -2.4438 0.1921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337780538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:23 Heat of formation + Delta-G solvation = -138.037013 kcal Electronic energy + Delta-G solvation = -28017.339827 eV Core-core repulsion = 24261.307840 eV Total energy + Delta-G solvation = -3756.031987 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.53741 -36.69001 -36.14932 -35.60216 -35.16499 -33.55252 -32.64142 -31.13598 -29.09906 -28.54501 -25.53005 -25.23668 -25.15897 -23.76436 -21.25760 -20.73338 -19.89637 -18.78647 -17.17627 -16.78826 -16.52077 -16.13861 -15.98380 -15.45620 -14.97372 -14.55147 -14.50324 -14.30164 -13.51120 -13.29609 -13.25716 -13.02083 -12.74055 -12.62864 -12.53922 -12.00141 -11.82737 -11.76367 -11.55085 -11.42114 -11.37096 -11.23642 -11.12754 -11.08865 -10.97374 -10.90214 -10.74847 -10.52104 -10.36194 -10.24346 -10.23529 -10.07801 -9.37579 -9.31148 -9.00460 -8.54077 -7.96984 -6.15316 -4.24711 1.32303 3.18086 3.25836 3.26544 3.57160 3.83145 4.24318 4.28550 4.77075 4.83428 4.90514 5.00970 5.12628 5.14018 5.21549 5.28573 5.47392 5.53801 5.64757 5.72683 5.74808 5.78054 5.88389 5.93674 6.01003 6.08006 6.19466 6.21864 6.26342 6.33314 6.37020 6.60956 6.67243 6.71282 6.87965 6.88780 7.10946 7.34401 7.35857 7.55532 7.61099 7.74303 8.01439 8.21394 8.79107 9.41902 10.89239 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.007434 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.724054 B = 3765.398597 C = 5665.810637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.059 0.941 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.993 5.993 13 C 0.109 3.891 14 S 2.780 3.220 15 O -1.002 7.002 16 O -0.980 6.980 17 N -1.122 6.122 18 C 0.161 3.839 19 H 0.118 0.882 20 C -0.166 4.166 21 C 0.092 3.908 22 H 0.067 0.933 23 C -0.154 4.154 24 C -0.122 4.122 25 C -0.155 4.155 26 C 0.062 3.938 27 O -0.376 6.376 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.092 0.908 31 H 0.265 0.735 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.410 0.590 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.824 -4.066 2.206 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.077 0.923 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.835 5.835 13 C -0.038 4.038 14 S 2.789 3.211 15 O -0.986 6.986 16 O -0.964 6.964 17 N -0.880 5.880 18 C 0.054 3.946 19 H 0.136 0.864 20 C -0.225 4.225 21 C 0.033 3.967 22 H 0.084 0.916 23 C -0.192 4.192 24 C -0.159 4.159 25 C -0.193 4.193 26 C -0.015 4.015 27 O -0.295 6.295 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.243 0.757 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.307 -3.214 2.883 12.103 hybrid contribution 0.710 -1.197 -1.384 1.963 sum 12.018 -4.411 1.499 12.889 Atomic orbital electron populations 1.22045 0.98019 0.99642 1.00725 1.18753 0.92032 0.92677 0.80261 0.92315 1.21339 1.32208 1.13202 0.90096 0.91908 1.24904 0.94922 0.94887 0.98830 1.69868 1.35822 1.22404 1.23969 0.86688 0.79257 0.79823 0.82399 1.20310 1.21260 1.20029 1.57734 1.64596 1.21393 1.39801 1.21150 0.98929 0.82000 1.01716 1.01876 0.72697 0.73792 0.72711 1.93540 1.86043 1.76192 1.42819 1.93579 1.83999 1.32361 1.86442 1.56051 1.30187 1.70621 1.31146 1.20872 0.96998 0.92014 0.84710 0.86401 1.22244 1.01536 0.96509 1.02179 1.22347 0.85647 0.99157 0.89581 0.91555 1.22258 1.00046 1.00082 0.96826 1.21573 0.95605 1.00261 0.98480 1.22187 0.98320 1.02297 0.96471 1.22503 0.91050 0.92862 0.95110 1.87899 1.27367 1.65590 1.48664 0.94905 0.96894 0.88974 0.92507 0.93990 0.90291 0.93241 0.75694 0.91879 0.91422 0.91912 0.89596 0.90609 0.91621 0.91892 0.91184 0.91408 0.89324 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.27 6.20 1.92 -69.08 -0.13 6.07 16 3 H 0.06 1.52 6.74 -51.93 -0.35 1.17 16 4 C -0.53 -12.63 7.33 -34.44 -0.25 -12.89 16 5 H 0.06 1.45 7.33 -52.48 -0.38 1.07 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -23.10 11.32 55.43 0.63 -22.48 16 8 Si 0.89 19.22 29.54 -169.99 -5.02 14.20 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 N -0.99 -20.15 3.12 -115.86 -0.36 -20.51 16 13 C 0.11 1.92 9.28 59.84 0.56 2.48 16 14 S 2.78 54.94 6.00 -107.50 -0.65 54.30 16 15 O -1.00 -21.00 17.21 -57.17 -0.98 -21.98 16 16 O -0.98 -22.22 15.96 -57.17 -0.91 -23.14 16 17 N -1.12 -18.58 5.52 -4.89 -0.03 -18.61 16 18 C 0.16 2.67 2.67 -67.92 -0.18 2.49 16 19 H 0.12 2.25 6.39 -51.93 -0.33 1.91 16 20 C -0.17 -2.58 9.08 37.16 0.34 -2.24 16 21 C 0.09 1.34 2.53 -26.68 -0.07 1.27 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 C -0.15 -2.11 5.22 -26.59 -0.14 -2.25 16 24 C -0.12 -1.41 6.03 -26.55 -0.16 -1.57 16 25 C -0.15 -1.55 6.14 -26.59 -0.16 -1.71 16 26 C 0.06 0.66 6.84 37.21 0.25 0.92 16 27 O -0.38 -5.09 9.24 -35.23 -0.33 -5.42 16 28 H 0.03 0.71 7.67 -51.93 -0.40 0.32 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 34 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 35 H 0.41 6.01 8.58 -34.47 -0.30 5.72 16 36 H 0.06 0.89 6.51 -51.93 -0.34 0.55 16 37 H 0.07 1.15 7.64 -51.93 -0.40 0.75 16 38 H 0.06 0.92 7.56 -51.93 -0.39 0.52 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 0.99 6.46 -51.93 -0.34 0.66 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -28.85 366.05 -9.51 -38.37 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.67 Total: 8.66 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.29 Total: -8.91 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.24 Total: -61.59 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -2.22 Total: -50.53 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.65 Total: 54.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.85 -9.51 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337780538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.672 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds