Wall clock time and date at job start Tue Mar 31 2020 12:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46811 * 60.00153 * 8 6 4 10 10 H 1.48499 * 109.46951 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47123 * 299.99953 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 S 1.65606 * 119.99935 * 239.99645 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.46500 * 120.00079 * 64.99962 * 17 14 12 19 19 H 1.08994 * 109.47331 * 335.00017 * 18 17 14 20 20 C 1.53002 * 109.47024 * 94.99721 * 18 17 14 21 21 C 1.53002 * 109.47206 * 214.99947 * 18 17 14 22 22 H 1.08996 * 109.47974 * 180.02562 * 21 18 17 23 23 C 1.53095 * 109.47847 * 59.97548 * 21 18 17 24 24 C 1.53174 * 109.15888 * 182.42109 * 23 21 18 25 25 C 1.53180 * 109.04880 * 56.96576 * 24 23 21 26 26 C 1.53097 * 109.16186 * 303.02628 * 25 24 23 27 27 O 1.42902 * 109.41592 * 57.60424 * 26 25 24 28 28 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 29 29 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 31 31 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 33 33 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 34 34 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 35 35 H 0.97004 * 119.99793 * 244.99782 * 17 14 12 36 36 H 1.08996 * 109.47443 * 300.00236 * 20 18 17 37 37 H 1.09007 * 109.46861 * 60.00396 * 20 18 17 38 38 H 1.08993 * 109.47182 * 179.97438 * 20 18 17 39 39 H 1.08994 * 109.52381 * 302.31641 * 23 21 18 40 40 H 1.09000 * 109.52127 * 62.50392 * 23 21 18 41 41 H 1.08998 * 109.53723 * 297.09777 * 24 23 21 42 42 H 1.09006 * 109.54636 * 176.83568 * 24 23 21 43 43 H 1.08994 * 109.52627 * 183.12076 * 25 24 23 44 44 H 1.09000 * 109.51922 * 62.92809 * 25 24 23 45 45 H 1.08995 * 109.47789 * 297.62392 * 26 25 24 46 46 H 1.09000 * 109.47787 * 177.58926 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 1.8279 -2.5194 -4.0084 10 1 1.8268 -0.4194 -5.2205 11 1 3.8074 -1.1185 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 2.6904 1.4970 2.1194 16 8 2.8229 -0.5649 3.5257 17 7 4.5438 -0.1044 1.8179 18 6 5.0139 0.4530 0.5472 19 1 4.1700 0.5698 -0.1327 20 6 5.6604 1.8171 0.7967 21 6 6.0429 -0.4930 -0.0751 22 1 6.3931 -0.0782 -1.0202 23 6 5.3963 -1.8581 -0.3242 24 6 6.4482 -2.8168 -0.8906 25 6 7.6256 -2.9005 0.0857 26 6 8.1860 -1.4950 0.3188 27 8 7.1492 -0.6467 0.8164 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.7080 1.1612 -3.4843 32 1 2.4158 -2.7378 0.9713 33 1 0.6905 -2.3003 0.9844 34 1 1.6239 -2.2855 2.5000 35 1 5.1541 -0.6013 2.3849 36 1 4.9274 2.4910 1.2400 37 1 6.5044 1.7002 1.4766 38 1 6.0106 2.2315 -0.1486 39 1 5.0100 -2.2550 0.6145 40 1 4.5800 -1.7496 -1.0383 41 1 6.7988 -2.4455 -1.8536 42 1 6.0090 -3.8063 -1.0178 43 1 8.4034 -3.5374 -0.3354 44 1 7.2844 -3.3183 1.0328 45 1 8.5639 -1.0938 -0.6215 46 1 8.9967 -1.5429 1.0458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337780541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:33 Heat of formation + Delta-G solvation = -137.003218 kcal Electronic energy + Delta-G solvation = -28354.845742 eV Core-core repulsion = 24598.858584 eV Total energy + Delta-G solvation = -3755.987158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.48837 -36.68858 -36.15898 -35.57680 -35.16402 -33.49081 -32.63175 -30.71276 -29.13571 -28.99202 -25.59021 -25.20506 -25.11425 -23.43350 -21.06801 -20.69754 -20.06552 -18.84352 -17.19518 -16.84026 -16.55570 -16.28332 -15.89913 -15.24171 -14.67349 -14.53491 -14.45903 -14.03512 -13.73448 -13.52217 -13.23841 -12.99410 -12.85007 -12.50720 -12.46673 -11.92447 -11.78756 -11.70392 -11.53647 -11.38526 -11.33944 -11.21473 -11.10195 -11.04011 -10.97688 -10.93358 -10.82224 -10.51980 -10.36871 -10.26181 -10.16047 -9.95000 -9.32070 -9.29103 -8.93849 -8.53293 -7.95266 -6.14375 -4.23341 1.34026 3.18988 3.26154 3.27345 3.58772 3.85549 4.25467 4.29412 4.79235 4.88013 4.96543 5.06589 5.11481 5.15178 5.25260 5.38350 5.52477 5.60780 5.70388 5.73323 5.77438 5.82363 5.89191 5.99104 6.05118 6.15293 6.20407 6.26641 6.34666 6.37598 6.52696 6.56834 6.68759 6.69183 6.84668 6.88314 7.10799 7.35496 7.39845 7.57760 7.64500 7.75646 8.01951 8.22893 8.80869 9.43153 10.90203 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010316 B = 0.007662 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.498430 B = 3653.383668 C = 5171.074243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.066 0.934 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.991 5.991 13 C 0.102 3.898 14 S 2.781 3.219 15 O -0.981 6.981 16 O -1.003 7.003 17 N -1.118 6.118 18 C 0.162 3.838 19 H 0.118 0.882 20 C -0.166 4.166 21 C 0.092 3.908 22 H 0.065 0.935 23 C -0.154 4.154 24 C -0.123 4.123 25 C -0.156 4.156 26 C 0.063 3.937 27 O -0.377 6.377 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.012 0.988 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 -5.282 3.193 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.076 0.924 4 C -0.566 4.566 5 H 0.084 0.916 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.717 3.283 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.834 5.834 13 C -0.045 4.045 14 S 2.790 3.210 15 O -0.965 6.965 16 O -0.987 6.987 17 N -0.877 5.877 18 C 0.054 3.946 19 H 0.136 0.864 20 C -0.225 4.225 21 C 0.033 3.967 22 H 0.083 0.917 23 C -0.192 4.192 24 C -0.160 4.160 25 C -0.193 4.193 26 C -0.014 4.014 27 O -0.296 6.296 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.320 -4.445 3.870 11.884 hybrid contribution 0.725 -1.215 -1.420 2.005 sum 11.044 -5.660 2.450 12.650 Atomic orbital electron populations 1.22060 0.98155 0.99578 1.00769 1.18742 0.91922 0.92646 0.80347 0.92352 1.21391 1.32090 1.13166 0.89983 0.91580 1.24909 0.94972 0.94892 0.98830 1.69871 1.35889 1.22469 1.23920 0.86707 0.79239 0.79828 0.82526 1.20297 1.21307 1.20102 1.57680 1.64635 1.21358 1.39724 1.21220 1.01655 0.81797 0.99780 1.01824 0.72743 0.73774 0.72691 1.93580 1.84036 1.32397 1.86467 1.93525 1.86069 1.76220 1.42929 1.55979 1.30107 1.70543 1.31066 1.20891 0.97089 0.91641 0.84930 0.86422 1.22231 1.01586 0.96619 1.02088 1.22361 0.86486 0.95360 0.92480 0.91708 1.22295 0.98977 0.94822 1.03099 1.21599 0.95968 1.00178 0.98289 1.22191 0.98663 0.97892 1.00583 1.22488 0.90138 0.89577 0.99174 1.87881 1.29642 1.67563 1.44506 0.88939 0.94855 0.96887 0.92553 0.93950 0.90759 0.92237 0.75561 0.91274 0.91983 0.92126 0.90848 0.88676 0.92165 0.91686 0.91545 0.91190 0.93601 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.95 37.16 0.33 -3.02 16 2 C 0.27 6.10 1.92 -69.08 -0.13 5.97 16 3 H 0.06 1.49 6.74 -51.93 -0.35 1.14 16 4 C -0.53 -12.32 7.68 -34.44 -0.26 -12.59 16 5 H 0.07 1.48 5.92 -52.49 -0.31 1.17 16 6 C 0.07 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.88 -23.04 11.32 55.43 0.63 -22.41 16 8 Si 0.89 19.20 29.54 -169.99 -5.02 14.18 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 N -0.99 -19.66 3.12 -115.85 -0.36 -20.02 16 13 C 0.10 1.77 9.90 59.85 0.59 2.36 16 14 S 2.78 54.15 6.05 -107.50 -0.65 53.50 16 15 O -0.98 -22.06 15.96 -57.18 -0.91 -22.98 16 16 O -1.00 -20.76 16.74 -57.18 -0.96 -21.72 16 17 N -1.12 -18.23 4.71 -4.89 -0.02 -18.26 16 18 C 0.16 2.64 2.64 -67.93 -0.18 2.46 16 19 H 0.12 2.21 6.39 -51.93 -0.33 1.88 16 20 C -0.17 -2.56 9.37 37.16 0.35 -2.21 16 21 C 0.09 1.33 2.44 -26.68 -0.07 1.26 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 23 C -0.15 -2.23 5.29 -26.59 -0.14 -2.37 16 24 C -0.12 -1.49 6.03 -26.55 -0.16 -1.65 16 25 C -0.16 -1.62 6.14 -26.59 -0.16 -1.79 16 26 C 0.06 0.68 6.84 37.21 0.25 0.94 16 27 O -0.38 -5.09 9.23 -35.23 -0.33 -5.41 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 34 H 0.06 0.97 7.02 -51.93 -0.36 0.60 16 35 H 0.41 6.03 8.40 -34.47 -0.29 5.74 16 36 H 0.07 1.16 7.64 -51.93 -0.40 0.77 16 37 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.07 7.54 -51.93 -0.39 0.68 16 40 H 0.09 1.58 6.37 -51.93 -0.33 1.25 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -28.39 363.07 -9.35 -37.73 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.52 Total: 9.00 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 0.33 Total: -9.08 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.24 Total: -60.69 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -2.19 Total: -50.11 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.65 Total: 53.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.39 -9.35 -37.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337780541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.270 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds