Wall clock time and date at job start Tue Mar 31 2020 12:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 H 1.09002 * 109.86917 * 53.99702 * 5 4 2 7 7 C 1.54103 * 109.87582 * 174.99978 * 5 4 2 8 8 C 1.54817 * 104.18572 * 121.45905 * 7 5 4 9 9 C 1.54995 * 102.09274 * 20.87504 * 8 7 5 10 10 O 1.43741 * 109.88114 * 292.83199 * 5 4 2 11 11 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 12 12 S 1.65605 * 119.99928 * 264.99900 * 11 2 1 13 13 O 1.42100 * 106.39989 * 178.54255 * 12 11 2 14 14 O 1.42093 * 106.40417 * 311.46301 * 12 11 2 15 15 N 1.65595 * 107.21495 * 65.00459 * 12 11 2 16 16 C 1.46502 * 120.00091 * 269.99711 * 15 12 11 17 17 C 1.46499 * 120.00344 * 89.99960 * 15 12 11 18 18 H 1.08999 * 109.46866 * 359.97438 * 17 15 12 19 19 C 1.52999 * 109.47507 * 239.99862 * 17 15 12 20 20 C 1.50706 * 109.47448 * 119.99860 * 17 15 12 21 21 H 1.08000 * 119.99616 * 359.97438 * 20 17 15 22 22 C 1.37875 * 120.00241 * 180.02562 * 20 17 15 23 23 N 1.31520 * 119.99921 * 359.97438 * 22 20 17 24 24 Si 1.86795 * 119.99983 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47363 * 89.99611 * 24 22 20 26 26 H 1.48504 * 109.46898 * 209.99706 * 24 22 20 27 27 H 1.48504 * 109.47042 * 329.99139 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 32 32 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 33 33 H 1.08999 * 110.48478 * 240.13041 * 7 5 4 34 34 H 1.08994 * 110.49053 * 2.64763 * 7 5 4 35 35 H 1.08994 * 110.90725 * 139.07660 * 8 7 5 36 36 H 1.09001 * 110.90406 * 262.68147 * 8 7 5 37 37 H 1.08996 * 110.61674 * 81.48244 * 9 8 7 38 38 H 1.08993 * 110.62012 * 204.31885 * 9 8 7 39 39 H 0.97000 * 120.00201 * 85.00286 * 11 2 1 40 40 H 1.08996 * 109.47113 * 89.99977 * 16 15 12 41 41 H 1.08997 * 109.47274 * 210.00238 * 16 15 12 42 42 H 1.09002 * 109.46848 * 330.00251 * 16 15 12 43 43 H 1.08991 * 109.47451 * 179.97438 * 19 17 15 44 44 H 1.08999 * 109.47081 * 299.99897 * 19 17 15 45 45 H 1.09004 * 109.46944 * 59.99743 * 19 17 15 46 46 H 0.96994 * 120.00035 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 1 4.0016 -0.9741 -0.3825 7 6 4.0992 -1.4411 -2.4985 8 6 4.8580 -0.4106 -3.3699 9 6 5.1396 0.7273 -2.3559 10 8 3.9490 0.7535 -1.5397 11 7 2.0184 -0.6906 1.1961 12 16 2.4122 0.1771 2.5505 13 8 2.8124 -0.7699 3.5314 14 8 3.2436 1.2442 2.1157 15 7 1.0168 0.8702 3.1115 16 6 0.6184 2.1991 2.6410 17 6 0.1807 0.1544 4.0783 18 1 0.6344 -0.8098 4.3073 19 6 -1.2118 -0.0660 3.4838 20 6 0.0644 0.9681 5.3415 21 1 0.5638 1.9227 5.4167 22 6 -0.6786 0.4934 6.4015 23 7 -1.2863 -0.6694 6.3100 24 14 -0.8232 1.5023 7.9668 25 1 -1.9992 2.4036 7.8680 26 1 -0.9930 0.5925 9.1282 27 1 0.4078 2.3128 8.1488 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -1.7715 -1.2057 32 1 1.6055 -0.2616 -2.1370 33 1 4.7791 -2.2167 -2.1460 34 1 3.2747 -1.8831 -3.0577 35 1 5.7885 -0.8325 -3.7495 36 1 4.2308 -0.0563 -4.1879 37 1 6.0151 0.4937 -1.7502 38 1 5.2745 1.6773 -2.8728 39 1 2.1110 -1.6562 1.1948 40 1 -0.0045 2.0983 1.7523 41 1 0.0555 2.7079 3.4235 42 1 1.5080 2.7800 2.3972 43 1 -1.8337 -0.5989 4.2030 44 1 -1.6657 0.8980 3.2545 45 1 -1.1277 -0.6546 2.5702 46 1 -1.8093 -1.0032 7.0556 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337828083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:35 Heat of formation + Delta-G solvation = -131.452478 kcal Electronic energy + Delta-G solvation = -27209.907341 eV Core-core repulsion = 23454.160881 eV Total energy + Delta-G solvation = -3755.746460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.66847 -36.84103 -36.40914 -35.98913 -35.11271 -32.53971 -32.30373 -31.15612 -29.41406 -29.02993 -25.96165 -25.38341 -25.11885 -22.52166 -21.21495 -20.93910 -20.73350 -18.83655 -17.32372 -16.85055 -16.52126 -16.27655 -16.04739 -15.58422 -15.23340 -15.01446 -14.33114 -13.79341 -13.74360 -13.45624 -13.38057 -13.26444 -12.62434 -12.51784 -12.23705 -12.12289 -11.90131 -11.85856 -11.73892 -11.45382 -11.35710 -11.28990 -11.22981 -11.14889 -11.03153 -10.87402 -10.84975 -10.76703 -10.47604 -10.39874 -10.17173 -10.01860 -9.74964 -9.27236 -9.11915 -8.42239 -7.90390 -6.04243 -4.10403 1.34061 3.30337 3.37306 3.41789 3.59692 3.77763 4.21498 4.36989 4.42928 4.47386 4.71438 4.82452 4.95794 5.06680 5.12983 5.16461 5.27471 5.37595 5.47848 5.50384 5.52128 5.58195 5.67563 5.73475 5.76642 5.82370 5.84348 5.95574 6.04311 6.10448 6.35371 6.42352 6.53918 6.74321 6.84229 6.86519 6.89316 7.08785 7.27094 7.56785 7.67966 7.84062 8.09695 8.32037 8.91819 9.55086 11.01395 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.003575 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.944626 B = 7831.009598 C = 8088.720601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.152 3.848 3 H 0.095 0.905 4 C -0.118 4.118 5 C 0.074 3.926 6 H 0.071 0.929 7 C -0.154 4.154 8 C -0.155 4.155 9 C 0.044 3.956 10 O -0.364 6.364 11 N -1.128 6.128 12 S 2.778 3.222 13 O -0.980 6.980 14 O -0.992 6.992 15 N -0.988 5.988 16 C 0.093 3.907 17 C 0.270 3.730 18 H 0.057 0.943 19 C -0.147 4.147 20 C -0.519 4.519 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.408 0.592 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.032 0.968 45 H 0.013 0.987 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -1.059 -19.606 20.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.045 3.955 3 H 0.113 0.887 4 C -0.157 4.157 5 C 0.016 3.984 6 H 0.089 0.911 7 C -0.191 4.191 8 C -0.193 4.193 9 C -0.032 4.032 10 O -0.283 6.283 11 N -0.886 5.886 12 S 2.786 3.214 13 O -0.964 6.964 14 O -0.975 6.975 15 N -0.831 5.831 16 C -0.054 4.054 17 C 0.167 3.833 18 H 0.075 0.925 19 C -0.206 4.206 20 C -0.559 4.559 21 H 0.081 0.919 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.241 0.759 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.051 0.949 45 H 0.032 0.968 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.655 -0.704 -19.035 20.177 hybrid contribution -0.438 -0.236 0.626 0.799 sum 6.218 -0.940 -18.409 19.454 Atomic orbital electron populations 1.22501 0.95309 1.02850 1.03125 1.20672 0.93710 0.96990 0.84147 0.88691 1.22056 0.93840 1.01432 0.98396 1.22785 0.95475 0.82582 0.97565 0.91125 1.23036 1.00641 0.98630 0.96839 1.23131 1.00847 0.96545 0.98782 1.23524 0.88997 0.99205 0.91516 1.88958 1.43136 1.24657 1.71516 1.56307 1.83912 1.19457 1.28927 1.01968 0.73769 0.73232 0.72396 1.93604 1.81653 1.63231 1.57865 1.93547 1.65461 1.55803 1.82688 1.57637 1.43456 1.26101 1.55880 1.21376 1.00261 0.84355 0.99363 1.18685 0.87129 0.92407 0.85116 0.92506 1.22134 1.00499 0.99487 0.98519 1.21362 1.30881 1.05533 0.98126 0.91933 1.24903 0.95336 0.95093 0.98566 1.69863 1.32783 1.18423 1.31871 0.86506 0.78413 0.79889 0.82653 1.20695 1.21178 1.19841 0.92178 0.90431 0.92046 0.90192 0.90084 0.90745 0.90342 0.90487 0.90595 0.92306 0.89108 0.75922 0.94291 0.89937 0.91904 0.89115 0.94925 0.96828 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.51 37.16 0.35 -1.82 16 2 C 0.15 1.98 2.90 -67.93 -0.20 1.78 16 3 H 0.10 1.40 7.15 -51.93 -0.37 1.03 16 4 C -0.12 -1.22 4.30 -26.73 -0.11 -1.33 16 5 C 0.07 0.83 3.35 -26.15 -0.09 0.75 16 6 H 0.07 0.89 7.62 -51.93 -0.40 0.49 16 7 C -0.15 -1.27 6.64 -25.20 -0.17 -1.44 16 8 C -0.16 -1.19 7.15 -24.72 -0.18 -1.36 16 9 C 0.04 0.44 7.72 38.21 0.29 0.73 16 10 O -0.36 -4.87 10.76 -35.23 -0.38 -5.25 16 11 N -1.13 -16.87 4.90 -4.89 -0.02 -16.89 16 12 S 2.78 55.62 6.12 -107.50 -0.66 54.97 16 13 O -0.98 -23.30 16.70 -57.17 -0.95 -24.25 16 14 O -0.99 -21.31 16.08 -57.17 -0.92 -22.23 16 15 N -0.99 -20.56 2.79 -115.85 -0.32 -20.89 16 16 C 0.09 1.67 9.41 59.85 0.56 2.24 16 17 C 0.27 6.59 2.62 -69.08 -0.18 6.41 16 18 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 19 C -0.15 -3.29 8.68 37.16 0.32 -2.97 16 20 C -0.52 -14.05 7.99 -34.44 -0.28 -14.32 16 21 H 0.06 1.69 7.33 -52.49 -0.38 1.30 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 24 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.09 4.49 -51.93 -0.23 0.86 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.41 5.27 8.84 -34.47 -0.30 4.96 16 40 H 0.04 0.60 6.22 -51.93 -0.32 0.27 16 41 H 0.08 1.55 7.02 -51.93 -0.36 1.19 16 42 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 43 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 44 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 45 H 0.01 0.25 7.41 -51.93 -0.38 -0.13 16 46 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -33.11 368.12 -9.40 -42.51 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.54 Total: 4.22 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 0.24 Total: -9.72 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.28 Total: -62.04 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -2.25 Total: -51.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -0.66 Total: 54.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.11 -9.40 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337828083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.941 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds