Wall clock time and date at job start Tue Mar 31 2020 12:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46706 * 2 1 4 4 C 1.52999 * 109.46921 * 240.00028 * 2 1 3 5 5 C 1.53001 * 109.46710 * 174.99798 * 4 2 1 6 6 H 1.09001 * 110.33214 * 305.70278 * 5 4 2 7 7 C 1.54484 * 110.37116 * 183.45106 * 5 4 2 8 8 C 1.54514 * 104.06030 * 217.19282 * 7 5 4 9 9 C 1.54481 * 104.06403 * 359.97438 * 8 7 5 10 10 O 1.44428 * 110.37262 * 67.95088 * 5 4 2 11 11 N 1.46500 * 109.46979 * 119.99796 * 2 1 3 12 12 S 1.65593 * 119.99925 * 265.00018 * 11 2 1 13 13 O 1.42096 * 106.40460 * 311.46213 * 12 11 2 14 14 O 1.42108 * 106.40218 * 178.54273 * 12 11 2 15 15 N 1.65606 * 107.21842 * 65.00539 * 12 11 2 16 16 C 1.46497 * 119.99739 * 269.99739 * 15 12 11 17 17 C 1.46497 * 120.00188 * 89.99816 * 15 12 11 18 18 H 1.09007 * 109.47078 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.47021 * 240.00233 * 17 15 12 20 20 C 1.50694 * 109.47115 * 120.00014 * 17 15 12 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 15 22 22 C 1.37885 * 119.99902 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99913 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99766 * 179.97438 * 22 20 17 25 25 H 1.48506 * 109.46985 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47276 * 299.99832 * 24 22 20 27 27 H 1.48498 * 109.47150 * 60.00043 * 24 22 20 28 28 H 1.09005 * 109.47058 * 60.00061 * 1 2 3 29 29 H 1.09001 * 109.46665 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47381 * 299.99685 * 1 2 3 31 31 H 1.08997 * 109.47238 * 294.99891 * 4 2 1 32 32 H 1.08994 * 109.47385 * 55.00050 * 4 2 1 33 33 H 1.08995 * 110.50895 * 335.83062 * 7 5 4 34 34 H 1.08994 * 110.50956 * 98.54691 * 7 5 4 35 35 H 1.08994 * 110.51372 * 118.64893 * 8 7 5 36 36 H 1.09008 * 110.50708 * 241.21514 * 8 7 5 37 37 H 1.09003 * 110.36853 * 142.81081 * 9 8 7 38 38 H 1.08999 * 110.37628 * 265.03835 * 9 8 7 39 39 H 0.97005 * 119.99538 * 85.00779 * 11 2 1 40 40 H 1.09001 * 109.46905 * 270.00036 * 16 15 12 41 41 H 1.09005 * 109.47144 * 29.99977 * 16 15 12 42 42 H 1.08993 * 109.47302 * 150.00165 * 16 15 12 43 43 H 1.08995 * 109.47131 * 179.97438 * 19 17 15 44 44 H 1.09002 * 109.47106 * 299.99878 * 19 17 15 45 45 H 1.08998 * 109.47089 * 59.99825 * 19 17 15 46 46 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.8733 0.4307 -1.2562 7 6 4.0954 -1.2602 -2.6123 8 6 5.4158 -1.9375 -2.1820 9 6 5.5271 -1.6191 -0.6745 10 8 4.1684 -1.3753 -0.2456 11 7 2.0183 -0.6906 1.1962 12 16 2.4121 0.1772 2.5504 13 8 3.2436 1.2444 2.1155 14 8 2.8124 -0.7697 3.5315 15 7 1.0167 0.8704 3.1115 16 6 0.6184 2.1993 2.6409 17 6 0.1806 0.1546 4.0784 18 1 0.6343 -0.8097 4.3074 19 6 -1.2118 -0.0659 3.4838 20 6 0.0644 0.9684 5.3414 21 1 0.5638 1.9230 5.4166 22 6 -0.6786 0.4937 6.4015 23 7 -1.2863 -0.6691 6.3101 24 14 -0.8220 1.5021 7.9673 25 1 -1.6696 0.7766 8.9474 26 1 0.5297 1.7159 8.5439 27 1 -1.4406 2.8155 7.6553 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.3895 -2.0022 -2.9853 34 1 4.2856 -0.4984 -3.3684 35 1 5.3627 -3.0143 -2.3424 36 1 6.2585 -1.5123 -2.7272 37 1 5.9479 -2.4691 -0.1372 38 1 6.1399 -0.7313 -0.5183 39 1 2.1111 -1.6562 1.1948 40 1 1.0438 2.9593 3.2962 41 1 0.9837 2.3496 1.6250 42 1 -0.4687 2.2777 2.6514 43 1 -1.8337 -0.5988 4.2030 44 1 -1.6658 0.8982 3.2544 45 1 -1.1277 -0.6544 2.5702 46 1 -1.8087 -1.0032 7.0560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337828087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:39 Heat of formation + Delta-G solvation = -130.966208 kcal Electronic energy + Delta-G solvation = -27415.004221 eV Core-core repulsion = 23659.278847 eV Total energy + Delta-G solvation = -3755.725374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.58893 -36.78094 -36.34233 -35.93426 -35.01738 -32.51520 -32.28489 -31.12046 -29.31274 -29.01065 -25.97698 -25.46231 -25.05766 -22.40469 -21.12939 -21.03567 -20.66836 -18.72482 -17.21916 -16.80055 -16.58294 -16.18269 -15.89540 -15.58675 -15.22782 -14.96587 -14.28426 -13.89713 -13.59890 -13.41639 -13.32868 -13.23806 -12.73614 -12.43257 -12.21073 -12.14160 -11.88961 -11.84039 -11.63598 -11.37665 -11.37174 -11.24360 -11.15756 -11.08420 -11.05027 -10.88426 -10.79262 -10.73658 -10.57082 -10.37082 -10.19789 -9.93674 -9.76768 -9.21803 -9.03367 -8.39368 -7.87102 -6.01329 -4.07439 1.42028 3.34062 3.38126 3.41820 3.66789 3.86368 4.30364 4.40545 4.45944 4.47710 4.75607 4.83693 5.00395 5.07611 5.16742 5.21847 5.29618 5.31054 5.45162 5.51108 5.54197 5.63493 5.64931 5.70247 5.75118 5.78365 5.84205 5.97597 6.02951 6.18977 6.34691 6.37476 6.53739 6.70536 6.84045 6.86073 6.87251 7.09954 7.41186 7.63464 7.72162 7.87077 8.11851 8.35195 8.94623 9.57915 11.04228 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.003806 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.924546 B = 7354.442469 C = 7709.887147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.154 3.846 3 H 0.084 0.916 4 C -0.116 4.116 5 C 0.074 3.926 6 H 0.071 0.929 7 C -0.151 4.151 8 C -0.155 4.155 9 C 0.040 3.960 10 O -0.358 6.358 11 N -1.114 6.114 12 S 2.784 3.216 13 O -1.000 7.000 14 O -0.979 6.979 15 N -0.993 5.993 16 C 0.109 3.891 17 C 0.270 3.730 18 H 0.058 0.942 19 C -0.148 4.148 20 C -0.519 4.519 21 H 0.061 0.939 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.897 3.103 25 H -0.287 1.287 26 H -0.276 1.276 27 H -0.277 1.277 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.014 0.986 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -0.855 -19.686 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.046 3.954 3 H 0.102 0.898 4 C -0.155 4.155 5 C 0.016 3.984 6 H 0.089 0.911 7 C -0.189 4.189 8 C -0.192 4.192 9 C -0.038 4.038 10 O -0.277 6.277 11 N -0.873 5.873 12 S 2.793 3.207 13 O -0.984 6.984 14 O -0.963 6.963 15 N -0.835 5.835 16 C -0.037 4.037 17 C 0.167 3.833 18 H 0.076 0.924 19 C -0.208 4.208 20 C -0.559 4.559 21 H 0.079 0.921 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.725 3.275 25 H -0.213 1.213 26 H -0.202 1.202 27 H -0.203 1.203 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.051 0.949 45 H 0.033 0.967 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.664 -0.759 -18.995 20.144 hybrid contribution -0.351 0.121 0.493 0.618 sum 6.313 -0.638 -18.501 19.559 Atomic orbital electron populations 1.22472 0.95262 1.03016 1.02949 1.20627 0.93701 0.96125 0.84951 0.89821 1.21984 0.93157 1.02362 0.98017 1.23036 0.93839 0.95742 0.85759 0.91132 1.23006 0.97200 1.00424 0.98259 1.22926 0.97915 1.01525 0.96875 1.23428 0.85588 1.00984 0.93757 1.89251 1.23533 1.73826 1.41096 1.56030 1.83572 1.19838 1.27847 1.01755 0.73492 0.73056 0.72419 1.93507 1.65603 1.56356 1.82891 1.93592 1.81510 1.63112 1.58061 1.57742 1.43688 1.25997 1.56096 1.21144 1.01496 0.84382 0.96694 1.18673 0.87091 0.92407 0.85137 0.92435 1.22142 1.00601 0.99383 0.98628 1.21324 1.30871 1.05498 0.98168 0.92086 1.24904 0.95360 0.95101 0.98533 1.69855 1.32829 1.18421 1.31870 0.86572 0.78113 0.80015 0.82769 1.21279 1.20198 1.20298 0.92134 0.92009 0.90616 0.90340 0.89569 0.90635 0.90735 0.90864 0.90848 0.89197 0.92326 0.75276 0.93455 0.93510 0.91071 0.89056 0.94907 0.96730 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.51 37.16 0.35 -1.72 16 2 C 0.15 1.93 2.93 -67.93 -0.20 1.73 16 3 H 0.08 1.08 7.06 -51.93 -0.37 0.72 16 4 C -0.12 -1.14 4.52 -26.73 -0.12 -1.26 16 5 C 0.07 0.80 3.25 -25.95 -0.08 0.72 16 6 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.15 -1.22 6.63 -25.16 -0.17 -1.39 16 8 C -0.15 -1.25 7.09 -25.16 -0.18 -1.43 16 9 C 0.04 0.42 7.63 37.93 0.29 0.71 16 10 O -0.36 -4.82 9.66 -35.23 -0.34 -5.16 16 11 N -1.11 -17.48 4.19 -4.89 -0.02 -17.50 16 12 S 2.78 57.31 6.07 -107.50 -0.65 56.65 16 13 O -1.00 -21.65 16.55 -57.17 -0.95 -22.60 16 14 O -0.98 -24.21 16.70 -57.17 -0.95 -25.17 16 15 N -0.99 -20.89 2.79 -115.86 -0.32 -21.21 16 16 C 0.11 1.97 8.39 59.85 0.50 2.47 16 17 C 0.27 6.68 2.62 -69.09 -0.18 6.50 16 18 H 0.06 1.60 6.91 -51.92 -0.36 1.24 16 19 C -0.15 -3.33 8.66 37.16 0.32 -3.01 16 20 C -0.52 -14.21 8.37 -34.44 -0.29 -14.50 16 21 H 0.06 1.67 7.65 -52.49 -0.40 1.26 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 23 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 24 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.03 5.56 -51.93 -0.29 0.74 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.41 6.16 8.48 -34.47 -0.29 5.87 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 42 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 43 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 44 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 45 H 0.01 0.27 7.41 -51.93 -0.38 -0.11 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -33.30 368.37 -9.59 -42.89 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.66 Total: 4.11 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 0.15 Total: -9.54 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.28 Total: -63.18 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -2.24 Total: -52.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 57.31 SS G_CDS: -0.65 Total: 56.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.30 -9.59 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337828087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.077 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds