Wall clock time and date at job start Tue Mar 31 2020 12:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46981 * 2 1 4 4 C 1.53005 * 109.47057 * 119.99796 * 2 1 3 5 5 C 1.52995 * 117.50194 * 300.00212 * 4 2 1 6 6 C 1.53000 * 117.49666 * 231.37649 * 4 2 1 7 7 N 1.46498 * 109.47087 * 240.00038 * 2 1 3 8 8 C 1.35228 * 125.99431 * 324.71715 * 7 2 1 9 9 C 1.35855 * 107.63816 * 179.89782 * 8 7 2 10 10 N 1.40486 * 126.10866 * 180.13792 * 9 8 7 11 11 C 1.34774 * 119.99357 * 180.29110 * 10 9 8 12 12 O 1.21395 * 120.00612 * 359.97438 * 11 10 9 13 13 C 1.49332 * 119.99525 * 180.02562 * 11 10 9 14 14 O 1.21360 * 120.00406 * 354.16254 * 13 11 10 15 15 N 1.34777 * 120.00137 * 174.16935 * 13 11 10 16 16 C 1.46502 * 119.99826 * 3.61776 * 15 13 11 17 17 C 1.46491 * 120.00458 * 183.62613 * 15 13 11 18 18 C 1.50703 * 109.47624 * 89.99121 * 17 15 13 19 19 H 1.07998 * 119.99690 * 0.02562 * 18 17 15 20 20 C 1.37876 * 120.00338 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00189 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99627 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46989 * 90.00351 * 22 20 18 24 24 H 1.48507 * 109.47088 * 209.99599 * 22 20 18 25 25 H 1.48499 * 109.47764 * 329.99867 * 22 20 18 26 26 C 1.40334 * 107.77146 * 0.36017 * 9 8 7 27 27 N 1.30821 * 108.21311 * 359.77754 * 26 9 8 28 28 H 1.08996 * 109.47595 * 59.99908 * 1 2 3 29 29 H 1.08998 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 299.99764 * 1 2 3 31 31 H 1.09003 * 115.55649 * 85.69546 * 4 2 1 32 32 H 1.08995 * 117.49982 * 145.01906 * 5 4 2 33 33 H 1.09001 * 117.49825 * 0.02562 * 5 4 2 34 34 H 1.08998 * 117.49999 * 0.02562 * 6 4 2 35 35 H 1.09003 * 117.49598 * 214.98068 * 6 4 2 36 36 H 1.08001 * 126.17863 * 0.03090 * 8 7 2 37 37 H 0.97001 * 119.99903 * 0.28085 * 10 9 8 38 38 H 1.08996 * 109.47070 * 84.00013 * 16 15 13 39 39 H 1.08999 * 109.47247 * 204.00060 * 16 15 13 40 40 H 1.09007 * 109.47353 * 324.00021 * 16 15 13 41 41 H 1.09000 * 109.47407 * 209.99609 * 17 15 13 42 42 H 1.09004 * 109.46953 * 329.99255 * 17 15 13 43 43 H 0.96997 * 120.00204 * 180.02562 * 21 20 18 44 44 H 1.07999 * 125.88926 * 179.77207 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6357 -0.1496 2.6096 6 6 3.0741 0.0052 2.1117 7 7 2.0183 -0.6906 -1.1962 8 6 1.4412 -1.7614 -1.7869 9 6 2.1990 -2.0956 -2.8638 10 7 1.9497 -3.1519 -3.7558 11 6 2.7904 -3.3773 -4.7848 12 8 3.7627 -2.6674 -4.9412 13 6 2.5252 -4.4997 -5.7334 14 8 1.6149 -5.2732 -5.5191 15 7 3.2968 -4.6539 -6.8276 16 6 4.4441 -3.7693 -7.0454 17 6 2.9882 -5.7059 -7.7993 18 6 2.0502 -5.1632 -8.8465 19 1 1.7175 -4.1371 -8.7938 20 6 1.6167 -5.9766 -9.8719 21 7 0.7985 -5.5028 -10.7861 22 14 2.1916 -7.7516 -9.9627 23 1 1.2477 -8.6166 -9.2103 24 1 2.2363 -8.1855 -11.3823 25 1 3.5476 -7.8639 -9.3678 26 6 3.2780 -1.2002 -2.9227 27 7 3.1681 -0.3613 -1.9250 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.1271 -1.8044 1.1643 32 1 1.4568 -0.8566 3.4196 33 1 1.0060 0.7402 2.6146 34 1 3.3909 0.9971 1.7893 35 1 3.8416 -0.6001 2.5941 36 1 0.5394 -2.2594 -1.4625 37 1 1.1727 -3.7189 -3.6310 38 1 5.3048 -4.1482 -6.4943 39 1 4.6800 -3.7354 -8.1091 40 1 4.2012 -2.7661 -6.6950 41 1 3.9092 -6.0421 -8.2756 42 1 2.5161 -6.5451 -7.2885 43 1 0.4932 -6.0751 -11.5073 44 1 4.0636 -1.2034 -3.6638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338833665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:25 Heat of formation + Delta-G solvation = 59.835012 kcal Electronic energy + Delta-G solvation = -26302.937426 eV Core-core repulsion = 22452.334614 eV Total energy + Delta-G solvation = -3850.602812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60621 -40.20304 -38.44206 -37.85948 -35.67228 -34.45428 -33.54476 -32.51601 -29.91442 -29.17915 -28.62042 -26.27841 -25.17694 -24.16115 -22.77467 -22.31816 -22.07318 -20.69454 -20.29639 -19.09951 -17.91675 -17.15469 -17.02812 -16.36272 -15.98323 -15.64147 -15.49047 -15.33898 -14.86252 -14.45948 -14.27420 -14.15753 -13.67081 -13.57013 -13.18360 -13.03081 -12.82040 -12.49493 -12.42521 -12.37488 -12.02786 -11.92836 -11.67730 -11.59546 -11.10318 -11.00769 -10.92936 -10.80468 -10.63675 -10.54302 -10.52971 -10.15816 -9.57674 -9.50543 -8.85388 -8.63548 -7.91451 -7.73428 -6.13101 -4.13456 1.47596 1.95757 2.12234 2.78467 2.86336 3.26484 3.27214 3.33357 3.34702 3.75024 3.98780 4.07540 4.26803 4.35593 4.41621 4.55145 4.57225 4.64522 4.74606 4.82977 4.97092 5.08573 5.16588 5.19556 5.32817 5.40495 5.46437 5.51170 5.59069 5.63125 5.70814 5.89512 6.02745 6.10302 6.51560 6.54893 6.75061 6.81539 6.86571 7.10288 7.26182 7.51705 7.60131 7.89036 8.11227 8.37163 8.60302 8.89801 9.45383 10.99877 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.002315 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.216713 B =12089.647933 C =12339.813658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.197 3.803 3 H 0.102 0.898 4 C -0.172 4.172 5 C -0.169 4.169 6 C -0.171 4.171 7 N -0.362 5.362 8 C 0.022 3.978 9 C 0.002 3.998 10 N -0.619 5.619 11 C 0.512 3.488 12 O -0.510 6.510 13 C 0.501 3.499 14 O -0.527 6.527 15 N -0.557 5.557 16 C 0.068 3.932 17 C 0.212 3.788 18 C -0.534 4.534 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.894 5.894 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.265 1.265 26 C 0.054 3.946 27 N -0.286 5.286 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.176 0.824 37 H 0.421 0.579 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.266 0.734 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 10.468 25.275 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.095 3.905 3 H 0.120 0.880 4 C -0.191 4.191 5 C -0.206 4.206 6 C -0.208 4.208 7 N -0.146 5.146 8 C -0.126 4.126 9 C -0.102 4.102 10 N -0.265 5.265 11 C 0.296 3.704 12 O -0.386 6.386 13 C 0.282 3.718 14 O -0.405 6.405 15 N -0.288 5.288 16 C -0.075 4.075 17 C 0.092 3.908 18 C -0.572 4.572 19 H 0.094 0.906 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 C -0.134 4.134 27 N -0.107 5.107 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.193 0.807 37 H 0.258 0.742 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.470 11.536 25.709 28.287 hybrid contribution -0.590 -1.993 -0.617 2.168 sum 1.880 9.544 25.092 26.911 Atomic orbital electron populations 1.22168 0.92523 1.03734 1.03660 1.20721 0.94394 0.95871 0.79504 0.87965 1.22685 1.05380 1.00018 0.91040 1.22984 0.98396 1.03208 0.96045 1.23046 0.92537 1.02136 1.03086 1.48278 1.19832 1.23886 1.22602 1.21701 1.01021 0.93899 0.95976 1.17764 1.00046 0.96483 0.95926 1.42510 1.28477 1.30066 1.25466 1.20650 0.82624 0.85573 0.81597 1.90516 1.28231 1.48435 1.71393 1.19486 0.83853 0.85465 0.82999 1.90729 1.30534 1.44669 1.74540 1.47752 1.27179 1.33343 1.20551 1.22266 0.87311 0.95821 1.02068 1.19884 0.97144 0.86563 0.87257 1.21273 1.27753 1.00280 1.07899 0.90557 1.24846 0.94454 0.98430 0.95160 1.69889 1.32869 1.36571 1.13865 0.86843 0.79889 0.85366 0.77567 1.19807 1.20960 1.18957 1.24560 0.99121 0.92195 0.97475 1.77398 1.02484 1.23622 1.07158 0.91202 0.91241 0.89939 0.87216 0.88329 0.88352 0.88350 0.88566 0.80734 0.74159 0.93156 0.91034 0.88507 0.94401 0.94051 0.92429 0.77619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.68 37.16 0.32 -0.52 16 2 C 0.20 1.46 3.55 -67.93 -0.24 1.22 16 3 H 0.10 0.76 7.90 -51.93 -0.41 0.35 16 4 C -0.17 -1.15 5.45 -90.62 -0.49 -1.64 16 5 C -0.17 -0.80 9.74 -26.73 -0.26 -1.06 16 6 C -0.17 -1.06 10.18 -26.73 -0.27 -1.34 16 7 N -0.36 -3.89 3.53 -54.65 -0.19 -4.08 16 8 C 0.02 0.23 10.63 -16.91 -0.18 0.05 16 9 C 0.00 0.03 6.90 -83.95 -0.58 -0.55 16 10 N -0.62 -8.81 5.45 -10.48 -0.06 -8.87 16 11 C 0.51 8.74 7.74 -11.64 -0.09 8.65 16 12 O -0.51 -8.72 10.29 5.46 0.06 -8.66 16 13 C 0.50 10.27 7.73 -11.64 -0.09 10.18 16 14 O -0.53 -11.97 16.05 5.49 0.09 -11.88 16 15 N -0.56 -11.85 2.86 -183.51 -0.52 -12.38 16 16 C 0.07 1.19 9.55 59.85 0.57 1.77 16 17 C 0.21 5.12 4.23 -5.20 -0.02 5.10 16 18 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 19 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 22 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 26 C 0.05 0.77 10.84 -17.19 -0.19 0.58 16 27 N -0.29 -3.90 12.56 30.72 0.39 -3.52 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.33 7.16 -51.93 -0.37 -0.04 16 30 H 0.08 0.28 7.29 -51.93 -0.38 -0.09 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.36 7.61 -51.93 -0.39 -0.04 16 34 H 0.10 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.18 1.26 7.27 -52.49 -0.38 0.88 16 37 H 0.42 5.35 8.31 -40.82 -0.34 5.01 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 40 H 0.10 1.67 5.35 -51.93 -0.28 1.39 16 41 H 0.04 0.87 7.13 -51.93 -0.37 0.50 16 42 H 0.04 1.04 6.80 -51.93 -0.35 0.69 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.21 3.04 5.92 -52.49 -0.31 2.73 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -33.82 367.43 -6.69 -40.51 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.13 Total: 4.32 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -1.96 Total: 8.98 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.39 Total: -55.27 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.14 Total: -20.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.82 -6.69 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338833665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.345 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds