Wall clock time and date at job start Tue Mar 31 2020 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46921 * 2 1 4 4 C 1.52998 * 109.47311 * 240.00260 * 2 1 3 5 5 C 1.52999 * 117.50004 * 128.62168 * 4 2 1 6 6 C 1.52996 * 117.49880 * 59.99528 * 4 2 1 7 7 N 1.46498 * 109.47265 * 119.99716 * 2 1 3 8 8 C 1.35229 * 125.99457 * 35.00577 * 7 2 1 9 9 C 1.35852 * 107.64148 * 179.97438 * 8 7 2 10 10 N 1.40481 * 126.11160 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99848 * 180.02562 * 10 9 8 12 12 O 1.21400 * 120.00168 * 359.97438 * 11 10 9 13 13 C 1.49323 * 119.99852 * 180.02562 * 11 10 9 14 14 O 1.21360 * 120.00378 * 354.15280 * 13 11 10 15 15 N 1.34780 * 119.99952 * 173.88013 * 13 11 10 16 16 C 1.46503 * 119.99804 * 3.88665 * 15 13 11 17 17 C 1.46501 * 119.99932 * 183.88043 * 15 13 11 18 18 C 1.50700 * 109.46990 * 90.00560 * 17 15 13 19 19 H 1.08006 * 119.99708 * 359.97438 * 18 17 15 20 20 C 1.37873 * 120.00123 * 180.02562 * 18 17 15 21 21 N 1.31512 * 119.99735 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99988 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46791 * 90.00164 * 22 20 18 24 24 H 1.48504 * 109.47003 * 209.99735 * 22 20 18 25 25 H 1.48494 * 109.47249 * 329.99720 * 22 20 18 26 26 C 1.40338 * 107.76946 * 0.24354 * 9 8 7 27 27 N 1.30819 * 108.21398 * 359.58962 * 26 9 8 28 28 H 1.08994 * 109.47319 * 60.00248 * 1 2 3 29 29 H 1.09001 * 109.46545 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46831 * 299.99820 * 1 2 3 31 31 H 1.09001 * 115.55018 * 274.32589 * 4 2 1 32 32 H 1.08999 * 117.49784 * 359.97438 * 5 4 2 33 33 H 1.08995 * 117.50232 * 145.02020 * 5 4 2 34 34 H 1.09000 * 117.49516 * 214.97744 * 6 4 2 35 35 H 1.08997 * 117.50279 * 359.97438 * 6 4 2 36 36 H 1.07998 * 126.17457 * 0.02925 * 8 7 2 37 37 H 0.96995 * 120.00165 * 359.97438 * 10 9 8 38 38 H 1.09002 * 109.47258 * 83.98906 * 16 15 13 39 39 H 1.09004 * 109.46790 * 203.98803 * 16 15 13 40 40 H 1.08997 * 109.46923 * 323.98248 * 16 15 13 41 41 H 1.08998 * 109.46775 * 209.99998 * 17 15 13 42 42 H 1.08988 * 109.47233 * 330.00292 * 17 15 13 43 43 H 0.97002 * 119.99856 * 179.97438 * 21 20 18 44 44 H 1.08006 * 125.88768 * 179.76075 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.0742 0.0053 -2.1116 6 6 1.6357 -0.1495 -2.6095 7 7 2.0184 -0.6905 1.1962 8 6 1.4384 -1.7581 1.7900 9 6 2.1989 -2.0953 2.8641 10 7 1.9493 -3.1511 3.7566 11 6 2.7894 -3.3759 4.7863 12 8 3.7620 -2.6663 4.9422 13 6 2.5244 -4.4984 5.7346 14 8 1.4992 -5.1413 5.6426 15 7 3.4263 -4.8012 6.6893 16 6 4.6262 -3.9764 6.8514 17 6 3.2067 -5.9550 7.5649 18 6 3.8264 -7.1810 6.9453 19 1 4.3329 -7.1080 5.9942 20 6 3.7460 -8.3959 7.5921 21 7 3.1289 -8.4848 8.7501 22 14 4.5137 -9.9158 6.8237 23 1 5.9201 -10.0456 7.2823 24 1 3.7462 -11.1192 7.2339 25 1 4.4848 -9.7908 5.3443 26 6 3.2750 -1.1965 2.9261 27 7 3.1682 -0.3612 1.9250 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.1269 -1.8044 -1.1642 32 1 3.3909 0.9972 -1.7892 33 1 3.8416 -0.5999 -2.5941 34 1 1.4569 -0.8566 -3.4196 35 1 1.0060 0.7402 -2.6146 36 1 0.5345 -2.2536 1.4680 37 1 1.1720 -3.7177 3.6322 38 1 4.3916 -3.1117 7.4722 39 1 5.4097 -4.5648 7.3291 40 1 4.9701 -3.6393 5.8736 41 1 3.6656 -5.7670 8.5356 42 1 2.1363 -6.1147 7.6939 43 1 3.0720 -9.3396 9.2050 44 1 4.0578 -1.1965 3.6702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338833675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:28 Heat of formation + Delta-G solvation = 54.988252 kcal Electronic energy + Delta-G solvation = -26293.194783 eV Core-core repulsion = 22442.381800 eV Total energy + Delta-G solvation = -3850.812983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58664 -40.13169 -38.40521 -37.77696 -35.58191 -34.38882 -33.52922 -32.56748 -29.90123 -29.10949 -28.00304 -26.19139 -25.13155 -24.19438 -22.76093 -22.46280 -22.10768 -20.73736 -20.28767 -19.08138 -17.89523 -17.06760 -16.63117 -16.29355 -15.90401 -15.65426 -15.41744 -15.24441 -14.84995 -14.40507 -14.30190 -14.21771 -13.65239 -13.51379 -13.08840 -13.00212 -12.82130 -12.48446 -12.36091 -12.10702 -11.91865 -11.90023 -11.65863 -11.28825 -11.00829 -10.98673 -10.91268 -10.76045 -10.69839 -10.53307 -10.44617 -10.20957 -9.66773 -9.49439 -8.74902 -8.48299 -7.86357 -7.68975 -6.09574 -4.15078 1.50864 1.99960 2.13629 2.84670 2.90126 3.27922 3.28878 3.35093 3.39792 3.82209 4.03147 4.13036 4.27968 4.41244 4.43573 4.55793 4.58747 4.65703 4.81854 4.85085 4.98530 5.09202 5.17574 5.25202 5.33312 5.42024 5.47346 5.52518 5.59698 5.64698 5.72028 5.96118 6.08162 6.18561 6.55957 6.76572 6.83900 6.89719 7.27515 7.30783 7.39447 7.62070 7.84710 8.01017 8.13944 8.24696 8.65539 8.90335 9.49975 10.98571 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.002404 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.531416 B =11644.705470 C =12030.724572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.197 3.803 3 H 0.102 0.898 4 C -0.172 4.172 5 C -0.171 4.171 6 C -0.169 4.169 7 N -0.362 5.362 8 C 0.021 3.979 9 C 0.003 3.997 10 N -0.620 5.620 11 C 0.510 3.490 12 O -0.512 6.512 13 C 0.498 3.502 14 O -0.528 6.528 15 N -0.561 5.561 16 C 0.068 3.932 17 C 0.241 3.759 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.053 3.947 27 N -0.286 5.286 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.175 0.825 37 H 0.421 0.579 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.265 0.735 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 18.220 -19.307 26.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.095 3.905 3 H 0.120 0.880 4 C -0.192 4.192 5 C -0.208 4.208 6 C -0.206 4.206 7 N -0.146 5.146 8 C -0.127 4.127 9 C -0.101 4.101 10 N -0.266 5.266 11 C 0.294 3.706 12 O -0.387 6.387 13 C 0.278 3.722 14 O -0.406 6.406 15 N -0.292 5.292 16 C -0.075 4.075 17 C 0.122 3.878 18 C -0.569 4.569 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.134 4.134 27 N -0.107 5.107 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.192 0.808 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.922 19.266 -19.700 27.832 hybrid contribution -0.289 -2.043 0.021 2.064 sum -4.211 17.223 -19.679 26.488 Atomic orbital electron populations 1.22165 0.92558 1.03728 1.03597 1.20714 0.94358 0.95845 0.79549 0.88003 1.22686 1.05381 1.00066 0.91018 1.23044 0.92544 1.02117 1.03081 1.22983 0.98401 1.03189 0.96068 1.48272 1.19678 1.24146 1.22553 1.21697 1.01006 0.93981 0.96031 1.17777 0.99986 0.96346 0.96026 1.42542 1.28386 1.30109 1.25612 1.20809 0.82429 0.85703 0.81658 1.90510 1.27365 1.47839 1.73012 1.19472 0.85303 0.84502 0.82896 1.90730 1.26289 1.51963 1.71618 1.48106 1.20140 1.29256 1.31725 1.22236 0.87375 0.93981 1.03903 1.19522 0.99065 0.80827 0.88361 1.21391 1.36176 0.92868 1.06478 0.92253 1.24933 0.95238 0.98933 0.94906 1.69931 1.42337 1.25870 1.15001 0.86452 0.79057 0.82060 0.79607 1.20532 1.21033 1.19842 1.24564 0.99165 0.92213 0.97446 1.77394 1.02538 1.23787 1.06979 0.89944 0.91231 0.91269 0.87186 0.88366 0.88543 0.88323 0.88377 0.80760 0.74191 0.93273 0.91232 0.88802 0.94171 0.93310 0.92582 0.77623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 8.68 37.16 0.32 -0.51 16 2 C 0.20 1.47 3.55 -67.93 -0.24 1.23 16 3 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 4 C -0.17 -1.19 5.45 -90.62 -0.49 -1.69 16 5 C -0.17 -1.11 10.18 -26.73 -0.27 -1.38 16 6 C -0.17 -0.84 9.73 -26.73 -0.26 -1.10 16 7 N -0.36 -3.92 3.53 -54.65 -0.19 -4.11 16 8 C 0.02 0.22 10.63 -16.91 -0.18 0.04 16 9 C 0.00 0.05 6.90 -83.96 -0.58 -0.53 16 10 N -0.62 -8.97 5.45 -10.48 -0.06 -9.03 16 11 C 0.51 8.88 7.74 -11.64 -0.09 8.79 16 12 O -0.51 -8.90 10.29 5.45 0.06 -8.85 16 13 C 0.50 10.47 7.73 -11.64 -0.09 10.38 16 14 O -0.53 -12.38 16.05 5.49 0.09 -12.29 16 15 N -0.56 -12.33 2.86 -183.52 -0.52 -12.85 16 16 C 0.07 1.23 9.56 59.85 0.57 1.80 16 17 C 0.24 6.25 5.16 -5.19 -0.03 6.23 16 18 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 19 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 22 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.05 0.77 10.84 -17.19 -0.19 0.58 16 27 N -0.29 -3.93 12.56 30.72 0.39 -3.55 16 28 H 0.08 0.28 7.29 -51.93 -0.38 -0.10 16 29 H 0.07 0.33 7.16 -51.93 -0.37 -0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.37 7.61 -51.93 -0.39 -0.03 16 36 H 0.18 1.28 7.26 -52.49 -0.38 0.90 16 37 H 0.42 5.45 8.31 -40.82 -0.34 5.11 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 40 H 0.09 1.64 5.34 -51.94 -0.28 1.37 16 41 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 42 H 0.05 1.39 7.37 -51.94 -0.38 1.01 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.21 3.08 5.92 -52.48 -0.31 2.77 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -32.92 371.01 -7.04 -39.96 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.16 Total: 3.61 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -1.95 Total: 10.31 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.35 Total: -54.92 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.14 Total: -21.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.92 -7.04 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338833675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.953 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds