Wall clock time and date at job start Tue Mar 31 2020 12:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99914 * 2 1 4 4 C 1.53002 * 112.84768 * 294.86817 * 3 2 1 5 5 C 1.52993 * 109.47060 * 289.29683 * 4 3 2 6 6 N 1.46504 * 109.47338 * 174.94744 * 5 4 3 7 7 S 1.65593 * 120.00330 * 164.72024 * 6 5 4 8 8 O 1.42096 * 106.40317 * 178.81615 * 7 6 5 9 9 O 1.42099 * 106.40466 * 311.73757 * 7 6 5 10 10 N 1.65599 * 107.21592 * 65.27591 * 7 6 5 11 11 C 1.46500 * 120.00232 * 270.00056 * 10 7 6 12 12 C 1.46506 * 119.99761 * 90.00126 * 10 7 6 13 13 H 1.09000 * 109.47143 * 359.97438 * 12 10 7 14 14 C 1.52999 * 109.46890 * 239.99757 * 12 10 7 15 15 C 1.50701 * 109.47331 * 120.00136 * 12 10 7 16 16 H 1.07998 * 119.99688 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99847 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00279 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99626 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47320 * 60.00140 * 19 17 15 21 21 H 1.48502 * 109.47147 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47627 * 300.00044 * 19 17 15 23 23 C 1.53780 * 113.68928 * 66.13336 * 3 2 1 24 24 C 1.53785 * 87.07911 * 89.12629 * 23 3 2 25 25 C 1.53777 * 113.61280 * 163.67152 * 3 2 1 26 26 H 1.09004 * 109.47075 * 176.24813 * 1 2 3 27 27 H 1.09001 * 109.47334 * 296.25069 * 1 2 3 28 28 H 1.09007 * 109.47166 * 56.25023 * 1 2 3 29 29 H 1.09006 * 109.46562 * 169.29567 * 4 3 2 30 30 H 1.08998 * 109.47319 * 49.30085 * 4 3 2 31 31 H 1.09002 * 109.47651 * 54.94722 * 5 4 3 32 32 H 1.09007 * 109.47235 * 294.94677 * 5 4 3 33 33 H 0.97004 * 119.99306 * 345.00652 * 6 5 4 34 34 H 1.08995 * 109.47269 * 90.00443 * 11 10 7 35 35 H 1.09004 * 109.47068 * 209.99702 * 11 10 7 36 36 H 1.08998 * 109.46950 * 329.99695 * 11 10 7 37 37 H 1.08992 * 109.47425 * 300.00158 * 14 12 10 38 38 H 1.09003 * 109.47241 * 59.99970 * 14 12 10 39 39 H 1.09000 * 109.47057 * 179.97438 * 14 12 10 40 40 H 0.97004 * 120.00215 * 179.97438 * 18 17 15 41 41 H 1.08998 * 113.61758 * 203.67327 * 23 3 2 42 42 H 1.09007 * 113.61744 * 334.58364 * 23 3 2 43 43 H 1.09001 * 113.61887 * 270.88297 * 24 23 3 44 44 H 1.08999 * 113.68789 * 139.98876 * 24 23 3 45 45 H 1.08999 * 113.61900 * 25.34737 * 25 3 2 46 46 H 1.08997 * 113.61304 * 156.25039 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7102 2.0894 -1.2792 5 6 2.4888 1.4787 -2.4460 6 7 2.1101 2.1513 -3.6912 7 16 3.0456 1.9736 -5.0460 8 8 2.4058 2.7151 -6.0755 9 8 4.3876 2.2055 -4.6403 10 7 2.9612 0.3818 -5.4945 11 6 3.9298 -0.5810 -4.9644 12 6 1.9178 -0.0637 -6.4216 13 1 1.2968 0.7861 -6.7051 14 6 1.0502 -1.1244 -5.7413 15 6 2.5575 -0.6520 -7.6528 16 1 3.6336 -0.6899 -7.7365 17 6 1.7690 -1.1418 -8.6721 18 7 0.4587 -1.0961 -8.5699 19 14 2.5619 -1.8705 -10.1985 20 1 3.4085 -3.0277 -9.8121 21 1 1.5044 -2.3232 -11.1376 22 1 3.4033 -0.8404 -10.8591 23 6 1.7410 2.1017 1.2878 24 6 3.0255 1.4719 1.8521 25 6 3.4960 1.3183 0.3961 26 1 -0.3633 -1.0255 -0.0672 27 1 -0.3634 0.4545 0.9217 28 1 -0.3634 0.5710 -0.8545 29 1 2.0099 3.1291 -1.1469 30 1 0.6420 2.0434 -1.4915 31 1 2.2562 0.4164 -2.5218 32 1 3.5579 1.6053 -2.2753 33 1 1.3136 2.7042 -3.7209 34 1 3.5460 -1.0105 -4.0391 35 1 4.0898 -1.3747 -5.6942 36 1 4.8741 -0.0744 -4.7656 37 1 1.6709 -1.9742 -5.4574 38 1 0.5875 -0.6989 -4.8507 39 1 0.2737 -1.4555 -6.4308 40 1 -0.0961 -1.4404 -9.2873 41 1 1.8060 3.1816 1.1552 42 1 0.8365 1.7922 1.8115 43 1 2.8594 0.5218 2.3599 44 1 3.6322 2.1637 2.4364 45 1 4.0084 0.3764 0.2000 46 1 4.0408 2.1840 0.0197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339007539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:28 Heat of formation + Delta-G solvation = -101.296379 kcal Electronic energy + Delta-G solvation = -26811.877057 eV Core-core repulsion = 23057.438264 eV Total energy + Delta-G solvation = -3754.438793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.30171 -36.65102 -36.12415 -35.79449 -35.37903 -35.18820 -32.54859 -30.21434 -29.06363 -27.28674 -25.90591 -25.45731 -25.14479 -24.30874 -21.96438 -20.76073 -19.66156 -18.76293 -17.32380 -16.82538 -16.52535 -16.29399 -16.06780 -15.60933 -15.32691 -14.99321 -14.70740 -14.39512 -14.12745 -13.81526 -13.40964 -13.15111 -12.73954 -12.64870 -12.45869 -12.15218 -11.98202 -11.78431 -11.73707 -11.52979 -11.42393 -11.34039 -11.30308 -11.19082 -11.06512 -10.97124 -10.87681 -10.80861 -10.43980 -10.28523 -10.19072 -10.03249 -9.57746 -9.26725 -9.19430 -8.43019 -7.93651 -6.05281 -4.11741 1.26801 3.31845 3.35979 3.39129 3.42801 3.55417 4.14480 4.18568 4.33826 4.42000 4.56041 4.61541 4.95336 5.00171 5.09733 5.13311 5.20921 5.24354 5.26422 5.41691 5.44816 5.53644 5.60487 5.62499 5.70578 5.72383 5.83817 5.87602 6.02208 6.06036 6.16073 6.19250 6.40516 6.70614 6.82244 6.88144 7.05747 7.06950 7.19581 7.52863 7.65933 7.82132 8.07612 8.30254 8.89961 9.53705 11.00398 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.003579 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.069617 B = 7822.164065 C = 8380.042305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.092 3.908 4 C -0.141 4.141 5 C 0.126 3.874 6 N -1.135 6.135 7 S 2.780 3.220 8 O -0.976 6.976 9 O -0.998 6.998 10 N -0.988 5.988 11 C 0.095 3.905 12 C 0.269 3.731 13 H 0.058 0.942 14 C -0.145 4.145 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.164 4.164 24 C -0.135 4.135 25 C -0.127 4.127 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.410 0.590 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.009 0.991 39 H 0.091 0.909 40 H 0.263 0.737 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 3.954 20.167 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.277 6.277 3 C 0.051 3.949 4 C -0.180 4.180 5 C 0.000 4.000 6 N -0.894 5.894 7 S 2.789 3.211 8 O -0.960 6.960 9 O -0.982 6.982 10 N -0.831 5.831 11 C -0.051 4.051 12 C 0.166 3.834 13 H 0.075 0.925 14 C -0.205 4.205 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.202 4.202 24 C -0.173 4.173 25 C -0.164 4.164 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.242 0.758 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.028 0.972 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.063 4.308 19.631 20.127 hybrid contribution -0.578 -0.344 -0.674 0.952 sum 0.484 3.964 18.958 19.374 Atomic orbital electron populations 1.22777 0.81099 1.02952 1.00127 1.87936 1.19700 1.25343 1.94708 1.22510 0.95558 0.84030 0.92785 1.22213 1.01441 1.00042 0.94269 1.21090 0.99361 0.96758 0.82835 1.56222 1.43297 1.63741 1.26114 1.01875 0.73186 0.73618 0.72429 1.93610 1.76905 1.70776 1.54734 1.93516 1.35943 1.85140 1.83563 1.57625 1.41657 1.25787 1.58010 1.21324 0.90970 0.94345 0.98468 1.18711 0.84086 0.94853 0.85767 0.92457 1.22094 1.01109 0.99111 0.98175 1.21307 0.93463 1.39994 1.01275 0.91953 1.24901 0.94855 0.95744 0.98356 1.69850 1.03326 1.46476 1.33265 0.86554 0.78882 0.79436 0.82500 1.20236 1.21244 1.20160 1.23549 0.99030 1.00290 0.97296 1.22764 0.96860 1.01184 0.96461 1.23035 0.93968 1.03541 0.95904 0.89430 0.94137 0.93446 0.90083 0.90771 0.91307 0.90664 0.75773 0.94430 0.89870 0.91953 0.94852 0.97158 0.89035 0.92677 0.89215 0.91051 0.89859 0.91311 0.90082 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.63 101.05 1.07 1.31 16 2 O -0.36 -3.99 10.44 -35.23 -0.37 -4.36 16 3 C 0.09 0.88 0.72 -89.81 -0.06 0.82 16 4 C -0.14 -1.41 4.85 -26.73 -0.13 -1.54 16 5 C 0.13 1.62 5.95 -4.04 -0.02 1.60 16 6 N -1.14 -16.88 6.05 -10.61 -0.06 -16.95 16 7 S 2.78 54.95 6.14 -107.50 -0.66 54.29 16 8 O -0.98 -22.95 16.70 -57.17 -0.95 -23.91 16 9 O -1.00 -20.77 16.20 -57.17 -0.93 -21.70 16 10 N -0.99 -20.71 3.12 -115.85 -0.36 -21.07 16 11 C 0.10 1.73 9.66 59.85 0.58 2.31 16 12 C 0.27 6.63 2.62 -69.08 -0.18 6.45 16 13 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 14 C -0.15 -3.33 8.97 37.16 0.33 -3.00 16 15 C -0.52 -14.11 7.99 -34.44 -0.28 -14.39 16 16 H 0.06 1.67 7.33 -52.49 -0.38 1.29 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 19 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 C -0.16 -1.27 7.21 -25.92 -0.19 -1.46 16 24 C -0.14 -1.04 8.02 -25.92 -0.21 -1.25 16 25 C -0.13 -1.13 6.63 -25.92 -0.17 -1.31 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.30 6.85 -51.93 -0.36 -0.05 16 28 H 0.05 0.42 6.48 -51.93 -0.34 0.09 16 29 H 0.08 0.72 7.95 -51.93 -0.41 0.30 16 30 H 0.07 0.71 6.49 -51.93 -0.34 0.37 16 31 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.08 0.97 7.24 -51.92 -0.38 0.59 16 33 H 0.41 5.31 8.65 -34.47 -0.30 5.01 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.58 7.02 -51.93 -0.36 1.21 16 36 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 37 H 0.03 0.72 7.67 -51.93 -0.40 0.33 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 0.61 7.97 -51.93 -0.41 0.19 16 42 H 0.07 0.53 6.82 -51.92 -0.35 0.18 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -32.52 373.16 -9.04 -41.55 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.58 Total: 3.40 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 0.65 Total: -8.81 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.20 Total: -62.29 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.25 Total: -49.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 54.95 SS G_CDS: -0.66 Total: 54.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.52 -9.04 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339007539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.746 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds