Wall clock time and date at job start Tue Mar 31 2020 12:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99500 * 2 1 4 4 C 1.52993 * 112.84807 * 294.86565 * 3 2 1 5 5 C 1.52997 * 109.47519 * 289.30017 * 4 3 2 6 6 N 1.46497 * 109.47474 * 174.94632 * 5 4 3 7 7 S 1.65601 * 120.00332 * 164.99583 * 6 5 4 8 8 O 1.42100 * 106.40304 * 311.46608 * 7 6 5 9 9 O 1.42105 * 106.40267 * 178.54079 * 7 6 5 10 10 N 1.65603 * 107.21419 * 65.00331 * 7 6 5 11 11 C 1.46500 * 120.00075 * 270.00075 * 10 7 6 12 12 C 1.46500 * 119.99872 * 89.99803 * 10 7 6 13 13 H 1.08997 * 109.47291 * 0.02562 * 12 10 7 14 14 C 1.52998 * 109.46985 * 120.00249 * 12 10 7 15 15 C 1.50698 * 109.47032 * 239.99937 * 12 10 7 16 16 H 1.07995 * 120.00594 * 0.02562 * 15 12 10 17 17 C 1.37887 * 119.99636 * 180.27925 * 15 12 10 18 18 N 1.31507 * 120.00213 * 359.72299 * 17 15 12 19 19 Si 1.86797 * 119.99734 * 179.72845 * 17 15 12 20 20 H 1.48503 * 109.47430 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47312 * 119.99877 * 19 17 15 22 22 H 1.48508 * 109.46885 * 239.99800 * 19 17 15 23 23 C 1.53775 * 113.68874 * 66.13858 * 3 2 1 24 24 C 1.53782 * 87.08295 * 89.12340 * 23 3 2 25 25 C 1.53783 * 87.08071 * 25.43064 * 24 23 3 26 26 H 1.08996 * 109.47112 * 176.25126 * 1 2 3 27 27 H 1.09007 * 109.47250 * 296.24942 * 1 2 3 28 28 H 1.08999 * 109.47544 * 56.24647 * 1 2 3 29 29 H 1.09005 * 109.46817 * 169.29826 * 4 3 2 30 30 H 1.08997 * 109.47364 * 49.30484 * 4 3 2 31 31 H 1.08997 * 109.46966 * 54.94408 * 5 4 3 32 32 H 1.09007 * 109.47154 * 294.94690 * 5 4 3 33 33 H 0.97006 * 119.99641 * 345.00575 * 6 5 4 34 34 H 1.08998 * 109.46654 * 270.00009 * 11 10 7 35 35 H 1.08998 * 109.46951 * 29.99897 * 11 10 7 36 36 H 1.08993 * 109.47141 * 150.00074 * 11 10 7 37 37 H 1.09003 * 109.47603 * 59.99927 * 14 12 10 38 38 H 1.09000 * 109.47168 * 180.02562 * 14 12 10 39 39 H 1.09009 * 109.47169 * 300.00053 * 14 12 10 40 40 H 0.96999 * 120.00336 * 180.02562 * 18 17 15 41 41 H 1.09008 * 113.61405 * 203.67000 * 23 3 2 42 42 H 1.09001 * 113.61912 * 334.57421 * 23 3 2 43 43 H 1.08995 * 113.61506 * 270.88163 * 24 23 3 44 44 H 1.08999 * 113.69245 * 139.98674 * 24 23 3 45 45 H 1.08996 * 113.61614 * 220.02171 * 25 24 23 46 46 H 1.09004 * 113.61360 * 89.11698 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 1.7101 2.0894 -1.2792 5 6 2.4887 1.4787 -2.4461 6 7 2.1100 2.1513 -3.6912 7 16 3.0418 1.9682 -5.0479 8 8 4.3849 2.2014 -4.6467 9 8 2.3992 2.7057 -6.0786 10 7 2.9559 0.3745 -5.4899 11 6 3.9258 -0.5863 -4.9586 12 6 1.9099 -0.0744 -6.4122 13 1 1.2887 0.7744 -6.6981 14 6 2.5558 -0.6768 -7.6616 15 6 1.0570 -1.1164 -5.7356 16 1 1.2722 -1.4142 -4.7201 17 6 0.0050 -1.6935 -6.4151 18 7 -0.2574 -1.3306 -7.6515 19 14 -1.0475 -2.9906 -5.5790 20 1 -0.5481 -3.2195 -4.1994 21 1 -2.4566 -2.5253 -5.5250 22 1 -0.9741 -4.2588 -6.3483 23 6 1.7410 2.1016 1.2878 24 6 3.0254 1.4719 1.8521 25 6 3.4960 1.3183 0.3961 26 1 -0.3633 -1.0254 -0.0672 27 1 -0.3634 0.4545 0.9217 28 1 -0.3634 0.5710 -0.8544 29 1 2.0097 3.1290 -1.1469 30 1 0.6420 2.0434 -1.4914 31 1 2.2562 0.4165 -2.5217 32 1 3.5579 1.6053 -2.2754 33 1 1.3134 2.7042 -3.7208 34 1 4.7882 -0.6372 -5.6233 35 1 4.2489 -0.2664 -3.9680 36 1 3.4619 -1.5702 -4.8894 37 1 3.1773 -1.5256 -7.3761 38 1 1.7776 -1.0104 -8.3480 39 1 3.1728 0.0770 -8.1510 40 1 -0.9976 -1.7362 -8.1294 41 1 1.8060 3.1817 1.1552 42 1 0.8365 1.7922 1.8115 43 1 2.8594 0.5219 2.3598 44 1 3.6323 2.1637 2.4364 45 1 4.0083 0.3765 0.1999 46 1 4.0408 2.1841 0.0197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339007546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:31 Heat of formation + Delta-G solvation = -102.474618 kcal Electronic energy + Delta-G solvation = -27061.009865 eV Core-core repulsion = 23306.519979 eV Total energy + Delta-G solvation = -3754.489886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21723 -36.66278 -36.12185 -35.69824 -35.29110 -35.21217 -32.58459 -30.12661 -29.05793 -27.18117 -25.83355 -25.46671 -25.16436 -24.22817 -21.88365 -20.74823 -19.58164 -18.81278 -17.22464 -16.76772 -16.39186 -16.34808 -15.99146 -15.63579 -15.26843 -14.96192 -14.61085 -14.36983 -14.08543 -13.71435 -13.39337 -13.16087 -12.74865 -12.62691 -12.38970 -12.08749 -11.93825 -11.75641 -11.70112 -11.52750 -11.37182 -11.34338 -11.28182 -11.19587 -11.00977 -10.96267 -10.88340 -10.84987 -10.39031 -10.21099 -10.19529 -10.05733 -9.47792 -9.32648 -9.04086 -8.47791 -7.93323 -6.08698 -4.16687 1.30349 3.23176 3.31878 3.34589 3.49793 3.57911 4.17461 4.26420 4.35990 4.41038 4.62327 4.68709 5.00463 5.08080 5.17674 5.21865 5.22367 5.29219 5.34887 5.48990 5.52335 5.61497 5.63026 5.68128 5.73708 5.79118 5.90461 5.98536 6.09126 6.16038 6.21375 6.25595 6.39763 6.69804 6.89866 6.90384 7.13614 7.16108 7.27513 7.55658 7.65191 7.79932 8.06817 8.27621 8.86917 9.49424 10.96356 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.005129 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.445473 B = 5457.634215 C = 7107.252887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.092 3.908 4 C -0.140 4.140 5 C 0.127 3.873 6 N -1.129 6.129 7 S 2.783 3.217 8 O -1.000 7.000 9 O -0.983 6.983 10 N -0.990 5.990 11 C 0.106 3.894 12 C 0.267 3.733 13 H 0.058 0.942 14 C -0.145 4.145 15 C -0.522 4.522 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.164 4.164 24 C -0.135 4.135 25 C -0.127 4.127 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.411 0.589 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.092 0.908 39 H 0.012 0.988 40 H 0.262 0.738 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.420 4.899 16.312 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C 0.051 3.949 4 C -0.179 4.179 5 C 0.000 4.000 6 N -0.888 5.888 7 S 2.792 3.208 8 O -0.983 6.983 9 O -0.968 6.968 10 N -0.832 5.832 11 C -0.040 4.040 12 C 0.165 3.835 13 H 0.076 0.924 14 C -0.204 4.204 15 C -0.562 4.562 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.202 4.202 24 C -0.172 4.172 25 C -0.164 4.164 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.086 5.261 15.727 17.079 hybrid contribution -1.568 -0.684 0.545 1.796 sum 2.518 4.576 16.272 17.090 Atomic orbital electron populations 1.22780 0.81022 1.03055 1.00084 1.87937 1.19765 1.25236 1.94696 1.22497 0.95476 0.84115 0.92777 1.22201 1.01617 0.99861 0.94256 1.21092 0.98992 0.97137 0.82782 1.56034 1.43263 1.63631 1.25886 1.01749 0.73059 0.73451 0.72537 1.93532 1.35930 1.85207 1.83658 1.93589 1.76938 1.71097 1.55138 1.57678 1.41311 1.25522 1.58709 1.21199 0.91222 0.95184 0.96433 1.18722 0.83293 0.96022 0.85505 0.92414 1.22054 1.00239 0.98255 0.99884 1.21423 1.12715 1.22238 0.99823 0.91819 1.24924 0.97272 0.96839 0.94854 1.69889 1.29623 1.42821 1.10225 0.86498 0.80141 0.81433 0.79642 1.19728 1.21086 1.21010 1.23548 0.99001 1.00255 0.97379 1.22758 0.96879 1.01156 0.96452 1.23031 0.94059 1.03462 0.95887 0.89433 0.94228 0.93279 0.90210 0.90656 0.90973 0.90903 0.75661 0.93913 0.93258 0.90201 0.94879 0.88923 0.96913 0.92748 0.89254 0.91066 0.89883 0.91366 0.90117 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.63 101.05 1.07 1.36 16 2 O -0.36 -4.54 10.44 -35.23 -0.37 -4.90 16 3 C 0.09 0.99 0.72 -89.81 -0.06 0.92 16 4 C -0.14 -1.57 4.85 -26.74 -0.13 -1.70 16 5 C 0.13 1.77 5.95 -4.05 -0.02 1.75 16 6 N -1.13 -17.90 6.05 -10.61 -0.06 -17.97 16 7 S 2.78 54.96 6.10 -107.50 -0.66 54.30 16 8 O -1.00 -20.58 16.68 -57.17 -0.95 -21.53 16 9 O -0.98 -22.58 16.70 -57.17 -0.95 -23.54 16 10 N -0.99 -20.68 3.12 -115.86 -0.36 -21.04 16 11 C 0.11 1.92 9.28 59.85 0.56 2.48 16 12 C 0.27 6.56 2.63 -69.08 -0.18 6.38 16 13 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 14 C -0.14 -3.48 8.97 37.16 0.33 -3.15 16 15 C -0.52 -13.37 7.99 -34.44 -0.28 -13.65 16 16 H 0.06 1.60 7.33 -52.49 -0.38 1.21 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 19 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.16 -1.42 7.21 -25.92 -0.19 -1.61 16 24 C -0.14 -1.14 8.02 -25.92 -0.21 -1.35 16 25 C -0.13 -1.23 6.63 -25.92 -0.17 -1.41 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.35 6.85 -51.93 -0.36 0.00 16 28 H 0.05 0.54 6.47 -51.93 -0.34 0.20 16 29 H 0.08 0.77 7.95 -51.93 -0.41 0.36 16 30 H 0.07 0.83 6.49 -51.93 -0.34 0.50 16 31 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 32 H 0.07 0.99 7.25 -51.92 -0.38 0.61 16 33 H 0.41 5.80 8.65 -34.47 -0.30 5.50 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 36 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 37 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 38 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 39 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.09 0.67 7.97 -51.92 -0.41 0.26 16 42 H 0.07 0.60 6.82 -51.93 -0.35 0.25 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -31.49 373.98 -9.11 -40.60 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.62 Total: 5.25 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 0.63 Total: -8.39 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.20 Total: -62.75 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -2.28 Total: -49.97 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 54.96 SS G_CDS: -0.66 Total: 54.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.49 -9.11 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339007546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.875 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds