Wall clock time and date at job start Tue Mar 31 2020 13:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47284 * 2 1 4 4 C 1.46496 * 120.00191 * 275.00518 * 3 2 1 5 5 C 1.50704 * 109.46847 * 277.58118 * 4 3 2 6 6 H 1.07999 * 119.99930 * 5.39754 * 5 4 3 7 7 C 1.37879 * 120.00228 * 185.39705 * 5 4 3 8 8 N 1.31512 * 119.99859 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99626 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.46735 * 89.99879 * 9 7 5 11 11 H 1.48489 * 109.46984 * 209.99602 * 9 7 5 12 12 H 1.48494 * 109.47467 * 330.00380 * 9 7 5 13 13 S 1.65609 * 119.99615 * 95.00033 * 3 2 1 14 14 O 1.42106 * 106.40187 * 330.44291 * 13 3 2 15 15 O 1.42105 * 106.39782 * 197.52577 * 13 3 2 16 16 N 1.65593 * 107.21543 * 83.98446 * 13 3 2 17 17 C 1.46504 * 119.99936 * 66.84509 * 16 13 3 18 18 C 1.53002 * 109.46669 * 165.91406 * 17 16 13 19 19 C 1.53009 * 109.46872 * 174.85850 * 18 17 16 20 20 O 1.42892 * 112.85012 * 289.70062 * 19 18 17 21 21 C 1.42901 * 113.99862 * 300.70858 * 20 19 18 22 22 C 1.53773 * 113.61366 * 158.38592 * 19 18 17 23 23 C 1.53784 * 87.08429 * 220.02035 * 22 19 18 24 24 C 1.53785 * 113.60967 * 60.89053 * 19 18 17 25 25 H 1.08994 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47146 * 299.99589 * 1 2 3 27 27 H 1.09001 * 109.47042 * 59.99367 * 1 2 3 28 28 H 1.08997 * 109.47250 * 240.00522 * 2 1 3 29 29 H 1.09003 * 109.46920 * 120.00109 * 2 1 3 30 30 H 1.08997 * 109.47436 * 37.58024 * 4 3 2 31 31 H 1.08995 * 109.47273 * 157.58596 * 4 3 2 32 32 H 0.97001 * 119.99435 * 180.02562 * 8 7 5 33 33 H 0.96997 * 119.99989 * 246.83595 * 16 13 3 34 34 H 1.09000 * 109.46969 * 285.91239 * 17 16 13 35 35 H 1.09003 * 109.47171 * 45.91676 * 17 16 13 36 36 H 1.09000 * 109.47237 * 294.85798 * 18 17 16 37 37 H 1.08992 * 109.47381 * 54.86344 * 18 17 16 38 38 H 1.09001 * 109.47373 * 186.40143 * 21 20 19 39 39 H 1.08996 * 109.47429 * 306.40443 * 21 20 19 40 40 H 1.09003 * 109.46724 * 66.40694 * 21 20 19 41 41 H 1.08998 * 113.62066 * 334.57196 * 22 19 18 42 42 H 1.09004 * 113.61679 * 105.47403 * 22 19 18 43 43 H 1.08990 * 113.61458 * 270.88914 * 23 22 19 44 44 H 1.09002 * 113.68630 * 139.98782 * 23 22 19 45 45 H 1.08999 * 113.61541 * 254.52697 * 24 19 18 46 46 H 1.08999 * 113.61559 * 25.43886 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4672 1.7401 -1.9134 6 1 4.0881 0.9710 -1.4784 7 6 3.8720 2.3848 -3.0630 8 7 5.0145 2.0634 -3.6295 9 14 2.7982 3.7157 -3.8149 10 1 3.1698 5.0342 -3.2415 11 1 2.9991 3.7413 -5.2860 12 1 1.3723 3.4296 -3.5149 13 16 2.4122 2.1202 1.4288 14 8 1.5824 1.5370 2.4242 15 8 2.4440 3.5158 1.1633 16 7 3.9652 1.6787 1.7971 17 6 5.0750 2.1327 0.9553 18 6 6.3986 1.8964 1.6855 19 6 7.5629 2.2505 0.7581 20 8 7.7194 1.3211 -0.3159 21 6 7.9555 -0.0229 0.1084 22 6 8.8719 2.5599 1.5034 23 6 9.0920 3.6915 0.4856 24 6 7.5650 3.7204 0.3059 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3357 1.8443 -1.9283 31 1 2.1382 3.1811 -1.0699 32 1 5.2994 2.5172 -4.4381 33 1 4.1400 1.1196 2.5702 34 1 5.0721 1.5752 0.0187 35 1 4.9605 3.1962 0.7456 36 1 6.4394 2.5238 2.5759 37 1 6.4713 0.8484 1.9759 38 1 8.1757 -0.6446 -0.7594 39 1 8.8020 -0.0440 0.7947 40 1 7.0685 -0.4055 0.6136 41 1 8.7207 2.9133 2.5233 42 1 9.6117 1.7622 1.4361 43 1 9.6309 3.3765 -0.4078 44 1 9.4972 4.6031 0.9251 45 1 7.2497 3.8595 -0.7282 46 1 7.0565 4.3911 0.9985 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339007603.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:05 Heat of formation + Delta-G solvation = -101.443694 kcal Electronic energy + Delta-G solvation = -27530.000434 eV Core-core repulsion = 23775.555252 eV Total energy + Delta-G solvation = -3754.445181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.82584 -36.69680 -36.14331 -35.32284 -35.24354 -35.07424 -32.57683 -30.18553 -29.88304 -27.08868 -26.79962 -25.49570 -23.91418 -22.88303 -21.64479 -21.39846 -19.22686 -18.75566 -17.30317 -16.86277 -16.72735 -15.97526 -15.85899 -15.43895 -15.04975 -14.68897 -14.35519 -14.18138 -14.00529 -13.61747 -13.47215 -13.24465 -12.74240 -12.46493 -12.28616 -12.04871 -12.01899 -11.87560 -11.79445 -11.60571 -11.41693 -11.36098 -11.12969 -11.05784 -10.91896 -10.90807 -10.66354 -10.57593 -10.48781 -10.31909 -10.13311 -9.82052 -9.55726 -9.10730 -8.81837 -8.57051 -8.07650 -6.07479 -4.08382 1.28142 3.30453 3.37282 3.41688 3.51734 3.96510 4.14121 4.41022 4.59698 4.75864 4.97489 5.00567 5.06394 5.23050 5.36539 5.39804 5.48750 5.49792 5.62925 5.65631 5.71181 5.76257 5.80577 5.84657 5.89752 5.96601 6.02480 6.04403 6.13775 6.25896 6.32967 6.42939 6.46515 6.52497 6.59035 6.63579 6.80442 6.91476 7.14652 7.32670 7.54647 7.60302 7.62678 8.47253 8.94076 9.52208 11.03023 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.006243 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.918837 B = 4483.666016 C = 5869.086003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.987 5.987 4 C 0.214 3.786 5 C -0.542 4.542 6 H 0.084 0.916 7 C 0.082 3.918 8 N -0.881 5.881 9 Si 0.863 3.137 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.266 1.266 13 S 2.787 3.213 14 O -1.001 7.001 15 O -0.982 6.982 16 N -1.131 6.131 17 C 0.118 3.882 18 C -0.138 4.138 19 C 0.098 3.902 20 O -0.341 6.341 21 C 0.031 3.969 22 C -0.164 4.164 23 C -0.134 4.134 24 C -0.127 4.127 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.404 0.596 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -2.860 9.828 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.090 3.910 5 C -0.581 4.581 6 H 0.102 0.898 7 C -0.123 4.123 8 N -0.518 5.518 9 Si 0.690 3.310 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.190 1.190 13 S 2.795 3.205 14 O -0.985 6.985 15 O -0.966 6.966 16 N -0.889 5.889 17 C -0.007 4.007 18 C -0.178 4.178 19 C 0.057 3.943 20 O -0.259 6.259 21 C -0.065 4.065 22 C -0.202 4.202 23 C -0.172 4.172 24 C -0.165 4.165 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.040 -2.048 9.794 10.790 hybrid contribution -0.065 -0.014 -0.178 0.190 sum 3.975 -2.062 9.615 10.607 Atomic orbital electron populations 1.22225 0.96965 1.01476 1.02363 1.20973 0.93512 0.82621 1.02378 1.57529 1.78883 1.22996 1.23326 1.19576 0.98307 0.92143 0.80940 1.21388 1.03798 1.22809 1.10121 0.89789 1.24806 0.94616 0.96320 0.96529 1.69911 1.20294 1.41658 1.19969 0.87057 0.81856 0.83438 0.78667 1.19766 1.21210 1.19047 1.01651 0.72636 0.73660 0.72570 1.93551 1.66012 1.79610 1.59312 1.93558 1.86718 1.31042 1.85276 1.55950 1.25269 1.68172 1.39555 1.21432 0.83582 1.01362 0.94352 1.22211 0.94878 1.02109 0.98572 1.22397 0.92683 0.91139 0.88082 1.88122 1.92061 1.16501 1.29170 1.22689 0.98941 0.84225 1.00690 1.23558 0.98339 0.99462 0.98865 1.22750 0.97028 0.98089 0.99307 1.23006 0.96072 0.93445 1.03942 0.92270 0.92444 0.92274 0.89899 0.91958 0.94912 0.93936 0.92656 0.76421 0.88014 0.90584 0.90924 0.91405 0.89727 0.94727 0.93993 0.89665 0.91385 0.89859 0.91730 0.89348 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.13 2.22 6.05 -4.04 -0.02 2.20 16 3 N -0.99 -19.67 2.83 -115.66 -0.33 -19.99 16 4 C 0.21 4.94 4.50 -5.19 -0.02 4.91 16 5 C -0.54 -13.94 9.01 -34.44 -0.31 -14.25 16 6 H 0.08 2.28 6.60 -52.49 -0.35 1.94 16 7 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 8 N -0.88 -25.10 13.96 55.43 0.77 -24.33 16 9 Si 0.86 20.76 27.37 -169.99 -4.65 16.11 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.16 6.70 56.52 0.38 -5.78 16 13 S 2.79 54.33 6.09 -107.50 -0.65 53.68 16 14 O -1.00 -19.99 17.17 -57.17 -0.98 -20.97 16 15 O -0.98 -22.29 15.99 -57.17 -0.91 -23.21 16 16 N -1.13 -18.50 6.06 -10.61 -0.06 -18.57 16 17 C 0.12 2.08 5.87 -4.04 -0.02 2.06 16 18 C -0.14 -1.94 4.73 -26.73 -0.13 -2.06 16 19 C 0.10 1.45 0.72 -89.80 -0.06 1.38 16 20 O -0.34 -5.95 10.42 -35.23 -0.37 -6.32 16 21 C 0.03 0.43 10.43 101.05 1.05 1.48 16 22 C -0.16 -1.94 7.20 -25.92 -0.19 -2.13 16 23 C -0.13 -1.68 8.02 -25.91 -0.21 -1.89 16 24 C -0.13 -1.90 6.65 -25.91 -0.17 -2.08 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 27 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 29 H 0.06 0.94 7.78 -51.93 -0.40 0.53 16 30 H 0.03 0.75 7.54 -51.93 -0.39 0.35 16 31 H 0.04 1.04 5.95 -51.93 -0.31 0.73 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.40 5.36 8.65 -34.46 -0.30 5.06 16 34 H 0.10 2.12 5.53 -51.93 -0.29 1.84 16 35 H 0.08 1.47 7.25 -51.93 -0.38 1.09 16 36 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 37 H 0.07 0.86 6.53 -51.93 -0.34 0.52 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.39 6.96 -51.93 -0.36 0.03 16 40 H 0.04 0.56 6.81 -51.93 -0.35 0.20 16 41 H 0.08 0.87 7.98 -51.93 -0.41 0.45 16 42 H 0.07 0.76 7.13 -51.93 -0.37 0.39 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -31.54 373.67 -8.97 -40.51 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.61 Total: 7.94 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 0.20 Total: -10.50 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.38 Total: -62.89 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -2.26 Total: -50.49 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.65 Total: 16.11 kcal Atomic # 16 Polarization: 54.33 SS G_CDS: -0.65 Total: 53.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.54 -8.97 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339007603.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.930 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds